Wall clock time and date at job start Mon Mar 30 2020 02:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86797 * 119.99847 * 2 1 4 4 H 1.48501 * 109.47034 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46896 * 119.99909 * 3 2 1 6 6 H 1.48499 * 109.47184 * 240.00000 * 3 2 1 7 7 C 1.40030 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99412 * 154.59883 * 7 2 1 9 9 C 1.41547 * 119.99933 * 334.60234 * 7 2 1 10 10 C 1.41192 * 120.99435 * 335.33612 * 9 7 2 11 11 C 1.36560 * 119.14445 * 179.72913 * 10 9 7 12 12 N 1.32088 * 121.27099 * 0.55908 * 11 10 9 13 13 C 1.32530 * 122.21353 * 359.71359 * 12 11 10 14 14 N 1.39079 * 119.65656 * 180.02562 * 13 12 11 15 15 C 1.46849 * 111.00116 * 235.76852 * 14 13 12 16 16 C 1.53044 * 109.52634 * 185.83538 * 15 14 13 17 17 C 1.53117 * 109.27550 * 300.82385 * 16 15 14 18 18 C 1.53109 * 109.16377 * 57.65329 * 17 16 15 19 19 H 1.09002 * 109.50897 * 62.28505 * 18 17 16 20 20 C 1.50702 * 109.50330 * 182.40250 * 18 17 16 21 21 N 1.34775 * 120.00094 * 299.80209 * 20 18 17 22 22 O 1.21287 * 120.00038 * 119.80305 * 20 18 17 23 23 C 1.46849 * 111.00101 * 359.97435 * 14 13 12 24 24 C 1.38743 * 120.69065 * 359.97438 * 13 12 11 25 25 H 0.97008 * 119.99985 * 174.60807 * 1 2 3 26 26 H 1.08000 * 120.42314 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.36218 * 180.27544 * 11 10 9 28 28 H 1.09001 * 109.46080 * 305.85383 * 15 14 13 29 29 H 1.09006 * 109.46367 * 65.81980 * 15 14 13 30 30 H 1.08998 * 109.50337 * 180.87579 * 16 15 14 31 31 H 1.09003 * 109.52934 * 60.78437 * 16 15 14 32 32 H 1.08996 * 109.52227 * 297.74429 * 17 16 15 33 33 H 1.09003 * 109.57127 * 177.58902 * 17 16 15 34 34 H 0.97002 * 119.99895 * 0.02562 * 21 20 18 35 35 H 0.97003 * 119.99971 * 179.97438 * 21 20 18 36 36 H 1.08999 * 109.46472 * 294.17977 * 23 14 13 37 37 H 1.09003 * 109.46109 * 54.14724 * 23 14 13 38 38 H 1.08003 * 120.67191 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2763 2.7464 0.0006 5 1 3.0951 1.6964 1.2126 6 1 3.0951 1.6964 -1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0093 -1.2576 -0.4018 9 6 1.4025 -2.3795 0.5247 10 6 0.3727 -2.2943 1.4869 11 6 -0.1884 -3.4443 1.9640 12 7 0.2214 -4.6300 1.5507 13 6 1.1871 -4.7707 0.6541 14 7 1.5765 -6.0452 0.2563 15 6 3.0166 -6.2441 0.4632 16 6 3.4347 -7.5971 -0.1172 17 6 2.6423 -8.7102 0.5738 18 6 1.1449 -8.4531 0.3844 19 1 0.9019 -8.4831 -0.6778 20 6 0.3567 -9.5119 1.1116 21 7 0.5050 -10.8096 0.7795 22 8 -0.4112 -9.1961 1.9958 23 6 0.7932 -7.0754 0.9503 24 6 1.8130 -3.6598 0.1072 25 1 -0.4850 -0.8364 -0.0789 26 1 0.0306 -1.3320 1.8381 27 1 -0.9794 -3.3831 2.6968 28 1 3.5687 -5.4482 -0.0368 29 1 3.2365 -6.2233 1.5306 30 1 4.5007 -7.7512 0.0503 31 1 3.2285 -7.6140 -1.1874 32 1 2.8787 -8.7189 1.6378 33 1 2.9052 -9.6724 0.1344 34 1 1.1193 -11.0622 0.0726 35 1 -0.0021 -11.4911 1.2479 36 1 1.0234 -7.0507 2.0154 37 1 -0.2698 -6.8833 0.8041 38 1 2.5997 -3.7748 -0.6237 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166933128.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:23 Heat of formation + Delta-G solvation = -43.813680 kcal Electronic energy + Delta-G solvation = -21083.206370 eV Core-core repulsion = 17923.292354 eV Total energy + Delta-G solvation = -3159.914016 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.57223 -40.51698 -38.81896 -36.38086 -35.05840 -34.03249 -32.71843 -31.86065 -30.19095 -27.77176 -25.74669 -25.18947 -23.47098 -22.68196 -21.73904 -20.62669 -19.97176 -18.51369 -17.84833 -17.31826 -16.99786 -16.35834 -16.23008 -15.81892 -15.75292 -15.56255 -15.08241 -14.97696 -14.72895 -14.28892 -13.94167 -13.85947 -13.74199 -13.40385 -12.84460 -12.56394 -12.31700 -11.99486 -11.96082 -11.78691 -11.73340 -11.51482 -11.10317 -10.89885 -10.70081 -10.62518 -10.19591 -10.00764 -9.35063 -8.85538 -6.72403 0.68709 0.86124 1.51387 1.59701 1.66003 1.81335 2.30146 2.37331 2.63909 2.94088 3.46074 3.60807 3.75857 3.82957 3.93690 4.15623 4.21034 4.31269 4.49787 4.54848 4.65553 4.71966 4.76095 4.78099 4.86785 4.98930 5.01089 5.06057 5.19087 5.34773 5.35010 5.50887 5.53474 5.79409 5.89947 5.93798 6.05974 6.40567 6.46334 6.61656 6.79059 7.35292 7.55836 7.92152 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.036767 B = 0.004065 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.368898 B = 6885.573625 C = 7467.932389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.007 3.993 3 Si 1.121 2.879 4 H -0.271 1.271 5 H -0.262 1.262 6 H -0.253 1.253 7 C -0.538 4.538 8 H 0.082 0.918 9 C 0.101 3.899 10 C -0.294 4.294 11 C 0.120 3.880 12 N -0.618 5.618 13 C 0.312 3.688 14 N -0.476 5.476 15 C 0.053 3.947 16 C -0.104 4.104 17 C -0.104 4.104 18 C -0.103 4.103 19 H 0.124 0.876 20 C 0.523 3.477 21 N -0.828 5.828 22 O -0.596 6.596 23 C 0.103 3.897 24 C -0.302 4.302 25 H 0.284 0.716 26 H 0.102 0.898 27 H 0.144 0.856 28 H 0.078 0.922 29 H 0.023 0.977 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.117 0.883 34 H 0.420 0.580 35 H 0.408 0.592 36 H 0.020 0.980 37 H 0.053 0.947 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.106 -16.362 -2.982 18.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.212 4.212 3 Si 0.937 3.063 4 H -0.195 1.195 5 H -0.187 1.187 6 H -0.177 1.177 7 C -0.567 4.567 8 H 0.100 0.900 9 C 0.093 3.907 10 C -0.318 4.318 11 C -0.031 4.031 12 N -0.339 5.339 13 C 0.085 3.915 14 N -0.194 5.194 15 C -0.073 4.073 16 C -0.142 4.142 17 C -0.142 4.142 18 C -0.124 4.124 19 H 0.142 0.858 20 C 0.308 3.692 21 N -0.393 5.393 22 O -0.476 6.476 23 C -0.025 4.025 24 C -0.328 4.328 25 H 0.097 0.903 26 H 0.120 0.880 27 H 0.161 0.839 28 H 0.096 0.904 29 H 0.042 0.958 30 H 0.122 0.878 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.252 0.748 35 H 0.240 0.760 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.947 -15.249 -2.582 16.954 hybrid contribution 0.044 -0.906 0.493 1.033 sum 6.991 -16.155 -2.089 17.726 Atomic orbital electron populations 1.70545 1.09116 1.33396 1.29503 1.28630 0.95576 1.07666 0.89283 0.82966 0.74749 0.69243 0.79343 1.19504 1.18708 1.17731 1.20850 1.03565 0.94637 1.37693 0.90004 1.18099 0.90080 0.93443 0.89081 1.21691 1.06441 0.98401 1.05270 1.21814 0.96961 0.87601 0.96759 1.67422 1.20351 1.27499 1.18645 1.19655 0.91855 0.90015 0.89997 1.59220 1.06417 0.99482 1.54315 1.22400 0.84903 1.01017 0.98991 1.21624 1.00989 0.90361 1.01202 1.21634 0.90098 1.01012 1.01441 1.21384 0.97644 0.91342 1.02080 0.85807 1.20687 0.81230 0.85142 0.82133 1.43591 1.47700 1.06344 1.41634 1.90768 1.40049 1.82818 1.33958 1.21353 0.97215 0.89326 0.94637 1.21303 1.10285 0.91589 1.09576 0.90338 0.88033 0.83862 0.90380 0.95827 0.87761 0.89427 0.92486 0.86520 0.74762 0.76000 0.96180 0.92849 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.30 12.35 21.84 0.27 -43.03 16 2 C 0.01 0.33 4.99 85.29 0.43 0.76 16 3 Si 1.12 41.89 30.00 68.60 2.06 43.95 16 4 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 6 H -0.25 -8.56 7.11 99.48 0.71 -7.85 16 7 C -0.54 -28.86 9.05 23.52 0.21 -28.65 16 8 H 0.08 4.20 7.96 -2.91 -0.02 4.18 16 9 C 0.10 5.57 5.33 -21.12 -0.11 5.45 16 10 C -0.29 -15.87 7.98 22.60 0.18 -15.69 16 11 C 0.12 6.11 11.10 84.26 0.94 7.04 16 12 N -0.62 -31.72 8.65 -194.48 -1.68 -33.40 16 13 C 0.31 15.19 6.41 132.90 0.85 16.04 16 14 N -0.48 -18.49 4.68 -702.15 -3.29 -21.78 16 15 C 0.05 1.64 5.25 86.33 0.45 2.09 16 16 C -0.10 -1.96 6.09 30.65 0.19 -1.78 16 17 C -0.10 -1.76 5.16 30.67 0.16 -1.61 16 18 C -0.10 -2.47 2.69 -11.49 -0.03 -2.50 16 19 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 20 C 0.52 13.02 7.43 87.66 0.65 13.67 16 21 N -0.83 -10.59 8.78 -173.53 -1.52 -12.11 16 22 O -0.60 -22.02 16.82 -3.05 -0.05 -22.07 16 23 C 0.10 3.82 3.23 86.33 0.28 4.10 16 24 C -0.30 -15.47 8.98 23.01 0.21 -15.26 16 25 H 0.28 16.16 6.63 -92.70 -0.61 15.55 16 26 H 0.10 5.57 6.54 -2.91 -0.02 5.55 16 27 H 0.14 6.42 8.06 -2.91 -0.02 6.40 16 28 H 0.08 2.51 6.67 -2.39 -0.02 2.50 16 29 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.12 0.92 7.65 -2.39 -0.02 0.90 16 34 H 0.42 2.05 8.31 -92.71 -0.77 1.28 16 35 H 0.41 4.47 8.93 -92.71 -0.83 3.64 16 36 H 0.02 0.84 8.05 -2.39 -0.02 0.83 16 37 H 0.05 2.34 7.68 -2.39 -0.02 2.32 16 38 H 0.11 5.34 7.15 -2.91 -0.02 5.32 16 Total: -1.00 -74.57 310.62 -0.17 -74.74 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: -0.35 Total: 30.04 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 4.40 Total: -16.33 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -6.22 Total: -110.33 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.05 Total: -22.07 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.06 Total: 43.95 kcal Total: -74.57 -0.17 -74.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166933128.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.923 kcal (2) G-P(sol) polarization free energy of solvation -74.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds