Wall clock time and date at job start Mon Mar 30 2020 02:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48499 * 109.47248 * 239.99977 * 3 2 1 5 5 H 1.48506 * 109.47175 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47057 * 119.99994 * 3 2 1 7 7 C 1.40055 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99682 * 186.34813 * 7 2 1 9 9 C 1.41269 * 119.99871 * 6.34650 * 7 2 1 10 10 C 1.40720 * 120.15856 * 173.85825 * 9 7 2 11 11 N 1.31899 * 119.92941 * 179.97438 * 10 9 7 12 12 C 1.32157 * 120.27601 * 359.73339 * 11 10 9 13 13 C 1.39925 * 120.31734 * 0.52232 * 12 11 10 14 14 N 1.38833 * 119.96674 * 179.75022 * 13 12 11 15 15 C 1.47119 * 110.99831 * 235.77190 * 14 13 12 16 16 C 1.52910 * 108.42229 * 188.51135 * 15 14 13 17 17 C 1.51397 * 110.96641 * 301.45940 * 16 15 14 18 18 H 1.09006 * 108.91760 * 172.49215 * 17 16 15 19 19 O 1.43482 * 112.48225 * 293.82472 * 17 16 15 20 20 C 1.44080 * 106.30438 * 163.26434 * 19 17 16 21 21 C 1.54199 * 107.30661 * 334.00703 * 20 19 17 22 22 C 1.54182 * 112.45146 * 51.18182 * 17 16 15 23 23 H 1.09003 * 112.44677 * 77.99663 * 22 17 16 24 24 C 1.46509 * 110.99738 * 358.79942 * 14 13 12 25 25 N 1.32260 * 120.06212 * 359.47927 * 13 12 11 26 26 H 0.97005 * 119.99952 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.03483 * 359.95882 * 10 9 7 28 28 H 1.07998 * 119.84094 * 180.25622 * 12 11 10 29 29 H 1.09000 * 109.68624 * 308.25532 * 15 14 13 30 30 H 1.09001 * 109.68161 * 68.76918 * 15 14 13 31 31 H 1.08998 * 109.17607 * 61.79967 * 16 15 14 32 32 H 1.09001 * 109.17682 * 181.03742 * 16 15 14 33 33 H 1.08998 * 109.87950 * 93.43527 * 20 19 17 34 34 H 1.09004 * 109.87522 * 214.57826 * 20 19 17 35 35 H 1.09002 * 110.52032 * 242.05857 * 21 20 19 36 36 H 1.08999 * 110.52337 * 119.31492 * 21 20 19 37 37 H 1.08995 * 109.21424 * 293.26763 * 24 14 13 38 38 H 1.09003 * 109.21267 * 52.58799 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2129 -0.0005 8 1 3.0827 -1.2157 0.1029 9 6 1.3078 -2.4325 -0.1363 10 6 2.0144 -3.6424 -0.2671 11 7 1.3564 -4.7785 -0.3931 12 6 0.0349 -4.7868 -0.3918 13 6 -0.6788 -3.5896 -0.2679 14 7 -2.0671 -3.6062 -0.2727 15 6 -2.6012 -2.7258 -1.3234 16 6 -4.1158 -2.6206 -1.1419 17 6 -4.7663 -3.9857 -1.2147 18 1 -5.8193 -3.8901 -0.9498 19 8 -4.6568 -4.5768 -2.5176 20 6 -4.9392 -5.9797 -2.3503 21 6 -4.5837 -6.3490 -0.8959 22 6 -4.0955 -5.0085 -0.2760 23 1 -4.3988 -4.8809 0.7632 24 6 -2.5752 -4.9694 -0.4456 25 7 -0.0322 -2.4429 -0.1408 26 1 -0.4850 0.8401 0.0004 27 1 3.0944 -3.6406 -0.2645 28 1 -0.4968 -5.7216 -0.4913 29 1 -2.1516 -1.7366 -1.2372 30 1 -2.3773 -3.1464 -2.3037 31 1 -4.3299 -2.1739 -0.1709 32 1 -4.5271 -1.9850 -1.9261 33 1 -5.9970 -6.1692 -2.5327 34 1 -4.3315 -6.5650 -3.0404 35 1 -3.7870 -7.0926 -0.8744 36 1 -5.4643 -6.7156 -0.3686 37 1 -2.3164 -5.3249 -1.4429 38 1 -2.1147 -5.6208 0.2972 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167213685.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:45 Heat of formation + Delta-G solvation = 11.099289 kcal Electronic energy + Delta-G solvation = -21792.964774 eV Core-core repulsion = 18635.431964 eV Total energy + Delta-G solvation = -3157.532811 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51440 -38.97949 -36.53199 -34.01474 -32.71878 -32.36706 -31.40234 -28.97275 -28.45202 -25.91722 -24.33052 -23.47285 -22.16517 -21.24597 -20.74542 -19.29129 -17.57572 -16.68604 -16.11012 -15.66046 -15.48346 -15.20844 -14.98935 -14.80020 -14.00325 -13.90282 -13.30515 -13.09945 -12.82956 -12.43705 -12.10862 -11.76565 -11.61285 -11.47524 -11.41461 -11.30860 -11.23168 -10.86870 -10.69331 -10.51114 -10.26775 -10.10035 -9.83789 -9.58273 -9.47071 -9.30146 -8.40693 -7.50476 -7.04537 -6.46186 -4.70085 2.52845 2.98278 3.02340 3.04267 3.20889 3.84666 3.92754 4.19513 4.58824 4.64060 4.82595 4.88994 5.05936 5.22618 5.39778 5.45959 5.54005 5.64508 5.73285 5.75690 5.84756 5.88251 5.93151 5.97852 6.07260 6.10022 6.19137 6.30037 6.44580 6.53687 6.58937 6.83741 6.97424 7.00042 7.05751 7.49036 7.57129 7.92023 8.07590 8.48252 8.70603 9.30623 9.88772 10.13685 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025771 B = 0.005403 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.221244 B = 5181.278124 C = 6013.025972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.705 5.705 2 C 0.067 3.933 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.412 4.412 8 H 0.091 0.909 9 C 0.228 3.772 10 C -0.087 4.087 11 N -0.416 5.416 12 C -0.162 4.162 13 C 0.292 3.708 14 N -0.469 5.469 15 C 0.070 3.930 16 C -0.108 4.108 17 C 0.083 3.917 18 H 0.058 0.942 19 O -0.370 6.370 20 C 0.046 3.954 21 C -0.154 4.154 22 C -0.111 4.111 23 H 0.100 0.900 24 C 0.067 3.933 25 N -0.466 5.466 26 H 0.277 0.723 27 H 0.132 0.868 28 H 0.126 0.874 29 H 0.105 0.895 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.113 -4.642 -1.681 11.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.444 4.444 8 H 0.109 0.891 9 C 0.100 3.900 10 C -0.257 4.257 11 N -0.128 5.128 12 C -0.322 4.322 13 C 0.050 3.950 14 N -0.186 5.186 15 C -0.056 4.056 16 C -0.146 4.146 17 C 0.025 3.975 18 H 0.076 0.924 19 O -0.289 6.289 20 C -0.031 4.031 21 C -0.192 4.192 22 C -0.130 4.130 23 H 0.118 0.882 24 C -0.061 4.061 25 N -0.187 5.187 26 H 0.088 0.912 27 H 0.149 0.851 28 H 0.143 0.857 29 H 0.124 0.876 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.499 -4.222 -1.433 11.407 hybrid contribution 0.484 0.197 -0.384 0.649 sum -10.015 -4.024 -1.817 10.945 Atomic orbital electron populations 1.70093 1.07289 1.28350 1.26759 1.26135 0.94986 1.01329 0.93570 0.86308 0.80089 0.79981 0.80070 1.18768 1.20110 1.18762 1.19598 0.94960 0.89217 1.40614 0.89132 1.19229 0.88126 0.93300 0.89337 1.23050 0.99126 0.89318 1.14225 1.67549 1.08526 1.30128 1.06577 1.22596 0.91105 0.96926 1.21579 1.20660 0.88764 0.92087 0.93508 1.58492 1.05656 1.08721 1.45773 1.22097 0.93344 0.99051 0.91136 1.21261 0.95809 0.94449 1.03083 1.22395 0.98232 0.94230 0.82641 0.92401 1.88844 1.91762 1.19925 1.28392 1.23165 0.99918 0.83303 0.96670 1.23179 1.01962 0.98254 0.95825 1.22768 0.95946 0.93979 1.00296 0.88161 1.22126 0.93123 0.90058 1.00810 1.69172 1.07955 1.22813 1.18804 0.91220 0.85082 0.85680 0.87646 0.94573 0.89604 0.90920 0.92586 0.90153 0.90126 0.90670 0.93740 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.88 11.51 55.55 0.64 -17.24 16 2 C 0.07 1.63 5.49 -17.34 -0.10 1.53 16 3 Si 0.91 17.80 29.56 -169.99 -5.03 12.78 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.41 -10.62 9.15 -37.75 -0.35 -10.97 16 8 H 0.09 2.14 7.86 -52.49 -0.41 1.73 16 9 C 0.23 6.20 6.54 -84.83 -0.55 5.65 16 10 C -0.09 -2.24 10.97 -16.59 -0.18 -2.42 16 11 N -0.42 -10.67 10.47 -12.11 -0.13 -10.79 16 12 C -0.16 -3.92 10.00 -16.78 -0.17 -4.09 16 13 C 0.29 7.19 6.45 -155.01 -1.00 6.19 16 14 N -0.47 -9.69 4.75 -173.21 -0.82 -10.51 16 15 C 0.07 1.37 5.35 -3.75 -0.02 1.35 16 16 C -0.11 -1.66 5.80 -27.59 -0.16 -1.82 16 17 C 0.08 1.14 3.15 -26.92 -0.08 1.06 16 18 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 19 O -0.37 -5.51 10.99 -35.23 -0.39 -5.90 16 20 C 0.05 0.53 7.60 37.78 0.29 0.81 16 21 C -0.15 -1.63 6.34 -24.75 -0.16 -1.79 16 22 C -0.11 -1.48 3.76 -88.63 -0.33 -1.81 16 23 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 24 C 0.07 1.13 3.04 -4.03 -0.01 1.12 16 25 N -0.47 -12.67 7.33 -10.14 -0.07 -12.75 16 26 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 27 H 0.13 3.06 8.06 -52.49 -0.42 2.64 16 28 H 0.13 2.69 5.76 -52.49 -0.30 2.39 16 29 H 0.11 2.36 7.55 -51.93 -0.39 1.96 16 30 H 0.04 0.74 8.03 -51.93 -0.42 0.32 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.82 7.76 -51.93 -0.40 0.42 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.79 7.40 -51.93 -0.38 0.40 16 38 H 0.08 1.34 6.77 -51.93 -0.35 0.99 16 LS Contribution 304.05 15.07 4.58 4.58 Total: -1.00 -29.81 304.05 -9.22 -39.03 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.18 Total: 5.99 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -2.82 Total: -5.19 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.38 Total: -51.30 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.39 Total: -5.90 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.81 -9.22 -39.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167213685.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.133 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds