Wall clock time and date at job start Mon Mar 30 2020 02:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48499 * 109.47248 * 239.99977 * 3 2 1 5 5 H 1.48506 * 109.47175 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47057 * 119.99994 * 3 2 1 7 7 C 1.40055 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99682 * 186.34813 * 7 2 1 9 9 C 1.41269 * 119.99871 * 6.34650 * 7 2 1 10 10 C 1.40720 * 120.15856 * 173.85825 * 9 7 2 11 11 N 1.31899 * 119.92941 * 179.97438 * 10 9 7 12 12 C 1.32157 * 120.27601 * 359.73339 * 11 10 9 13 13 C 1.39925 * 120.31734 * 0.52232 * 12 11 10 14 14 N 1.38833 * 119.96674 * 179.75022 * 13 12 11 15 15 C 1.47119 * 110.99831 * 235.77190 * 14 13 12 16 16 C 1.52910 * 108.42229 * 188.51135 * 15 14 13 17 17 C 1.51397 * 110.96641 * 301.45940 * 16 15 14 18 18 H 1.09006 * 108.91760 * 172.49215 * 17 16 15 19 19 O 1.43482 * 112.48225 * 293.82472 * 17 16 15 20 20 C 1.44080 * 106.30438 * 163.26434 * 19 17 16 21 21 C 1.54199 * 107.30661 * 334.00703 * 20 19 17 22 22 C 1.54182 * 112.45146 * 51.18182 * 17 16 15 23 23 H 1.09003 * 112.44677 * 77.99663 * 22 17 16 24 24 C 1.46509 * 110.99738 * 358.79942 * 14 13 12 25 25 N 1.32260 * 120.06212 * 359.47927 * 13 12 11 26 26 H 0.97005 * 119.99952 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.03483 * 359.95882 * 10 9 7 28 28 H 1.07998 * 119.84094 * 180.25622 * 12 11 10 29 29 H 1.09000 * 109.68624 * 308.25532 * 15 14 13 30 30 H 1.09001 * 109.68161 * 68.76918 * 15 14 13 31 31 H 1.08998 * 109.17607 * 61.79967 * 16 15 14 32 32 H 1.09001 * 109.17682 * 181.03742 * 16 15 14 33 33 H 1.08998 * 109.87950 * 93.43527 * 20 19 17 34 34 H 1.09004 * 109.87522 * 214.57826 * 20 19 17 35 35 H 1.09002 * 110.52032 * 242.05857 * 21 20 19 36 36 H 1.08999 * 110.52337 * 119.31492 * 21 20 19 37 37 H 1.08995 * 109.21424 * 293.26763 * 24 14 13 38 38 H 1.09003 * 109.21267 * 52.58799 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2129 -0.0005 8 1 3.0827 -1.2157 0.1029 9 6 1.3078 -2.4325 -0.1363 10 6 2.0144 -3.6424 -0.2671 11 7 1.3564 -4.7785 -0.3931 12 6 0.0349 -4.7868 -0.3918 13 6 -0.6788 -3.5896 -0.2679 14 7 -2.0671 -3.6062 -0.2727 15 6 -2.6012 -2.7258 -1.3234 16 6 -4.1158 -2.6206 -1.1419 17 6 -4.7663 -3.9857 -1.2147 18 1 -5.8193 -3.8901 -0.9498 19 8 -4.6568 -4.5768 -2.5176 20 6 -4.9392 -5.9797 -2.3503 21 6 -4.5837 -6.3490 -0.8959 22 6 -4.0955 -5.0085 -0.2760 23 1 -4.3988 -4.8809 0.7632 24 6 -2.5752 -4.9694 -0.4456 25 7 -0.0322 -2.4429 -0.1408 26 1 -0.4850 0.8401 0.0004 27 1 3.0944 -3.6406 -0.2645 28 1 -0.4968 -5.7216 -0.4913 29 1 -2.1516 -1.7366 -1.2372 30 1 -2.3773 -3.1464 -2.3037 31 1 -4.3299 -2.1739 -0.1709 32 1 -4.5271 -1.9850 -1.9261 33 1 -5.9970 -6.1692 -2.5327 34 1 -4.3315 -6.5650 -3.0404 35 1 -3.7870 -7.0926 -0.8744 36 1 -5.4643 -6.7156 -0.3686 37 1 -2.3164 -5.3249 -1.4429 38 1 -2.1147 -5.6208 0.2972 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167213685.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:44 Heat of formation + Delta-G solvation = -8.778238 kcal Electronic energy + Delta-G solvation = -21793.826729 eV Core-core repulsion = 18635.431964 eV Total energy + Delta-G solvation = -3158.394765 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.85000 -40.64278 -38.05187 -35.90885 -34.10179 -33.72753 -33.10874 -30.74946 -29.61632 -27.78674 -25.80594 -24.94428 -23.66798 -22.87620 -22.04492 -20.59302 -19.43878 -18.20232 -17.53692 -17.24979 -16.86854 -16.71976 -16.41041 -16.36193 -15.51221 -15.31782 -14.87957 -14.50649 -14.34581 -13.74495 -13.55229 -13.33521 -13.08338 -12.98514 -12.84786 -12.60375 -12.58642 -12.45245 -12.08089 -11.91837 -11.73501 -11.49400 -11.37828 -11.35363 -11.19336 -10.49279 -10.25799 -9.44133 -8.86914 -8.33565 -6.68066 0.61851 1.10425 1.41874 1.54326 1.56225 2.19747 2.62904 2.82899 2.93789 3.55663 3.63671 3.78644 3.91877 4.01691 4.06823 4.16063 4.21007 4.28443 4.31671 4.39892 4.48514 4.56846 4.63339 4.74292 4.78038 4.86559 4.90940 4.97912 5.03149 5.08521 5.13511 5.15647 5.19418 5.26268 5.60630 5.89250 6.01555 6.09351 6.19855 6.57436 6.76129 7.33564 7.93855 8.31119 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025771 B = 0.005403 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.221244 B = 5181.278124 C = 6013.025972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.022 3.978 3 Si 0.994 3.006 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.434 4.434 8 H 0.104 0.896 9 C 0.195 3.805 10 C -0.109 4.109 11 N -0.425 5.425 12 C -0.171 4.171 13 C 0.283 3.717 14 N -0.472 5.472 15 C 0.079 3.921 16 C -0.101 4.101 17 C 0.082 3.918 18 H 0.088 0.912 19 O -0.398 6.398 20 C 0.039 3.961 21 C -0.143 4.143 22 C -0.109 4.109 23 H 0.114 0.886 24 C 0.067 3.933 25 N -0.494 5.494 26 H 0.284 0.716 27 H 0.147 0.853 28 H 0.151 0.849 29 H 0.069 0.931 30 H 0.018 0.982 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.034 0.966 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.593 -4.678 -1.404 12.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.202 4.202 3 Si 0.814 3.186 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.466 4.466 8 H 0.122 0.878 9 C 0.068 3.932 10 C -0.278 4.278 11 N -0.137 5.137 12 C -0.332 4.332 13 C 0.041 3.959 14 N -0.190 5.190 15 C -0.047 4.047 16 C -0.139 4.139 17 C 0.025 3.975 18 H 0.106 0.894 19 O -0.319 6.319 20 C -0.037 4.037 21 C -0.181 4.181 22 C -0.128 4.128 23 H 0.132 0.868 24 C -0.060 4.060 25 N -0.217 5.217 26 H 0.095 0.905 27 H 0.165 0.835 28 H 0.168 0.832 29 H 0.087 0.913 30 H 0.036 0.964 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.052 0.948 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.989 -4.290 -1.158 12.786 hybrid contribution 0.891 0.160 -0.487 1.028 sum -11.097 -4.130 -1.645 11.954 Atomic orbital electron populations 1.70189 1.09038 1.29877 1.26563 1.27119 0.95803 1.04789 0.92477 0.85072 0.78563 0.74711 0.80290 1.18228 1.19197 1.17917 1.20063 0.95863 0.89817 1.40817 0.87808 1.19706 0.88736 0.94484 0.90265 1.23270 0.99953 0.89223 1.15399 1.67558 1.09237 1.30125 1.06761 1.23019 0.90961 0.97986 1.21259 1.21110 0.90643 0.91687 0.92503 1.58577 1.03517 1.11104 1.45765 1.21938 0.96195 0.96712 0.89894 1.21221 0.92412 0.96468 1.03805 1.22438 0.99537 0.92962 0.82576 0.89388 1.88820 1.92191 1.21870 1.28972 1.23394 1.01458 0.81576 0.97263 1.23164 1.03220 0.96561 0.95189 1.22805 0.92789 0.95889 1.01274 0.86798 1.22264 0.95937 0.87705 1.00106 1.69171 1.08265 1.24176 1.20090 0.90470 0.83531 0.83202 0.91252 0.96369 0.89030 0.89823 0.90211 0.90103 0.89830 0.87647 0.94777 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.21 11.51 21.84 0.25 -37.96 16 2 C 0.02 1.09 5.49 85.30 0.47 1.56 16 3 Si 0.99 36.24 29.56 68.60 2.03 38.27 16 4 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 5 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 6 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 7 C -0.43 -22.87 9.15 23.46 0.21 -22.66 16 8 H 0.10 4.97 7.86 -2.91 -0.02 4.95 16 9 C 0.20 11.01 6.54 40.16 0.26 11.27 16 10 C -0.11 -5.80 10.97 85.29 0.94 -4.86 16 11 N -0.43 -22.25 10.47 -192.23 -2.01 -24.26 16 12 C -0.17 -8.47 10.00 85.05 0.85 -7.62 16 13 C 0.28 14.39 6.45 133.36 0.86 15.25 16 14 N -0.47 -19.82 4.75 -701.91 -3.34 -23.15 16 15 C 0.08 3.18 5.35 86.23 0.46 3.64 16 16 C -0.10 -3.03 5.80 30.04 0.17 -2.85 16 17 C 0.08 2.07 3.15 30.47 0.10 2.17 16 18 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 19 O -0.40 -11.11 10.99 -148.98 -1.64 -12.75 16 20 C 0.04 0.78 7.60 72.39 0.55 1.33 16 21 C -0.14 -2.53 6.34 31.88 0.20 -2.33 16 22 C -0.11 -2.62 3.76 -9.51 -0.04 -2.66 16 23 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 24 C 0.07 2.22 3.04 86.38 0.26 2.48 16 25 N -0.49 -27.96 7.33 -186.00 -1.36 -29.33 16 26 H 0.28 13.28 8.29 -92.70 -0.77 12.52 16 27 H 0.15 7.03 8.06 -2.91 -0.02 7.01 16 28 H 0.15 6.45 5.76 -2.91 -0.02 6.43 16 29 H 0.07 3.27 7.55 -2.39 -0.02 3.25 16 30 H 0.02 0.77 8.03 -2.39 -0.02 0.75 16 31 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.08 1.45 7.76 -2.39 -0.02 1.43 16 36 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.03 1.20 7.40 -2.39 -0.02 1.18 16 38 H 0.08 2.60 6.77 -2.39 -0.02 2.59 16 Total: -1.00 -66.79 304.05 0.30 -66.49 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 1.06 Total: 27.96 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 5.30 Total: -5.27 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -6.46 Total: -114.70 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -1.64 Total: -12.75 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 2.03 Total: 38.27 kcal Total: -66.79 0.30 -66.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167213685.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.713 kcal (2) G-P(sol) polarization free energy of solvation -66.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds