Wall clock time and date at job start Mon Mar 30 2020 02:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86807 * 119.99822 * 2 1 4 4 H 1.48496 * 109.47402 * 274.98822 * 3 2 1 5 5 H 1.48497 * 109.46884 * 34.99160 * 3 2 1 6 6 H 1.48502 * 109.46698 * 154.98927 * 3 2 1 7 7 C 1.40059 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00326 * 186.30733 * 7 2 1 9 9 C 1.41275 * 119.99634 * 6.29794 * 7 2 1 10 10 C 1.40725 * 120.15393 * 173.79569 * 9 7 2 11 11 N 1.31905 * 119.92536 * 180.02562 * 10 9 7 12 12 C 1.32153 * 120.27342 * 0.02562 * 11 10 9 13 13 C 1.39924 * 120.32233 * 359.97438 * 12 11 10 14 14 N 1.38833 * 119.96888 * 179.97438 * 13 12 11 15 15 C 1.46349 * 110.99814 * 123.95152 * 14 13 12 16 16 C 1.53857 * 111.71155 * 181.59398 * 15 14 13 17 17 C 1.51455 * 107.06120 * 303.78415 * 16 15 14 18 18 H 1.09003 * 109.38174 * 303.90098 * 17 16 15 19 19 O 1.42151 * 118.22146 * 177.48161 * 17 16 15 20 20 C 1.45122 * 105.10656 * 197.94421 * 19 17 16 21 21 C 1.55154 * 107.05692 * 27.09245 * 20 19 17 22 22 C 1.53111 * 102.99371 * 1.94953 * 21 20 19 23 23 H 1.09001 * 110.79366 * 90.33048 * 22 21 20 24 24 C 1.47767 * 110.93920 * 251.94898 * 14 13 12 25 25 N 1.32259 * 120.06121 * 0.26159 * 13 12 11 26 26 H 0.97001 * 120.00419 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.03696 * 0.04263 * 10 9 7 28 28 H 1.07997 * 119.83967 * 180.02562 * 12 11 10 29 29 H 1.09005 * 109.02997 * 61.02555 * 15 14 13 30 30 H 1.08992 * 108.97697 * 302.13280 * 15 14 13 31 31 H 1.08998 * 109.93713 * 184.39386 * 16 15 14 32 32 H 1.09002 * 109.93226 * 63.16964 * 16 15 14 33 33 H 1.08997 * 109.92107 * 267.73768 * 20 19 17 34 34 H 1.09000 * 110.07725 * 146.53267 * 20 19 17 35 35 H 1.08992 * 110.70883 * 243.56670 * 21 20 19 36 36 H 1.09004 * 110.70370 * 120.32196 * 21 20 19 37 37 H 1.09004 * 110.86900 * 55.41906 * 24 14 13 38 38 H 1.08997 * 109.03680 * 294.19641 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.3833 2.1074 -1.3947 5 1 1.4954 2.6199 0.8029 6 1 3.5875 1.4120 0.5920 7 6 2.0076 -1.2129 -0.0005 8 1 3.0827 -1.2158 0.1022 9 6 1.3076 -2.4326 -0.1353 10 6 2.0144 -3.6424 -0.2674 11 7 1.3562 -4.7785 -0.3934 12 6 0.0347 -4.7861 -0.3968 13 6 -0.6789 -3.5897 -0.2662 14 7 -2.0672 -3.6061 -0.2712 15 6 -2.6034 -2.9785 0.9372 16 6 -4.1411 -3.0229 0.9672 17 6 -4.6297 -2.3571 -0.3023 18 1 -4.2177 -1.3499 -0.3642 19 8 -6.0299 -2.3168 -0.5441 20 6 -6.1610 -2.0390 -1.9625 21 6 -4.8835 -2.5852 -2.6531 22 6 -4.1054 -3.2109 -1.4924 23 1 -4.3738 -4.2600 -1.3676 24 6 -2.5974 -3.0432 -1.5304 25 7 -0.0322 -2.4425 -0.1437 26 1 -0.4851 0.8400 0.0004 27 1 3.0943 -3.6405 -0.2652 28 1 -0.4970 -5.7205 -0.5000 29 1 -2.2772 -1.9390 0.9725 30 1 -2.2155 -3.5024 1.8107 31 1 -4.5116 -2.4812 1.8374 32 1 -4.4823 -4.0576 0.9993 33 1 -6.2400 -0.9640 -2.1246 34 1 -7.0424 -2.5404 -2.3621 35 1 -4.3137 -1.7741 -3.1065 36 1 -5.1401 -3.3400 -3.3965 37 1 -2.1869 -3.5676 -2.3933 38 1 -2.3424 -1.9848 -1.5818 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167213688.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:48 Heat of formation + Delta-G solvation = 9.297822 kcal Electronic energy + Delta-G solvation = -21778.105950 eV Core-core repulsion = 18620.495022 eV Total energy + Delta-G solvation = -3157.610928 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.33611 -39.04985 -36.68864 -34.09852 -32.67857 -32.28385 -31.23105 -28.99725 -28.49157 -26.08470 -23.86872 -23.09363 -22.22184 -21.43989 -20.67800 -19.75257 -17.67918 -16.45832 -15.95169 -15.58092 -15.38374 -15.17145 -15.04857 -14.90332 -14.60391 -13.64509 -13.19597 -13.00621 -12.71619 -12.59922 -12.15796 -11.80267 -11.64160 -11.51654 -11.43586 -11.22826 -10.99095 -10.89621 -10.74099 -10.53786 -10.41640 -9.99117 -9.88162 -9.59529 -9.44078 -9.04001 -8.16187 -7.76347 -7.38856 -6.57196 -4.76125 2.38598 2.85227 2.96916 3.00112 3.12626 3.77724 3.82197 4.29015 4.54285 4.73580 4.80827 4.97051 5.19927 5.36204 5.49872 5.53452 5.60396 5.67716 5.73823 5.87009 5.92003 5.94202 5.97587 6.03577 6.14863 6.18654 6.25026 6.30098 6.43071 6.51732 6.71167 6.77843 6.90770 7.00137 7.13433 7.45830 7.60022 7.82977 8.05643 8.39725 8.66695 9.18508 9.73871 10.04271 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017664 B = 0.006231 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.757515 B = 4492.909255 C = 5484.270949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.069 3.931 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.090 0.910 9 C 0.218 3.782 10 C -0.068 4.068 11 N -0.428 5.428 12 C -0.087 4.087 13 C 0.270 3.730 14 N -0.492 5.492 15 C 0.072 3.928 16 C -0.102 4.102 17 C 0.070 3.930 18 H 0.063 0.937 19 O -0.371 6.371 20 C 0.048 3.952 21 C -0.148 4.148 22 C -0.121 4.121 23 H 0.091 0.909 24 C 0.085 3.915 25 N -0.476 5.476 26 H 0.275 0.725 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.620 0.213 -2.497 8.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.448 4.448 8 H 0.109 0.891 9 C 0.090 3.910 10 C -0.237 4.237 11 N -0.140 5.140 12 C -0.247 4.247 13 C 0.031 3.969 14 N -0.216 5.216 15 C -0.055 4.055 16 C -0.140 4.140 17 C 0.012 3.988 18 H 0.081 0.919 19 O -0.291 6.291 20 C -0.028 4.028 21 C -0.186 4.186 22 C -0.140 4.140 23 H 0.110 0.890 24 C -0.042 4.042 25 N -0.197 5.197 26 H 0.086 0.914 27 H 0.151 0.849 28 H 0.149 0.851 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.149 -0.130 -2.313 9.438 hybrid contribution 0.708 1.650 -0.238 1.811 sum -8.442 1.520 -2.551 8.949 Atomic orbital electron populations 1.70071 1.07378 1.28168 1.27790 1.26111 0.94952 1.01371 0.93330 0.86239 0.80630 0.80410 0.79225 1.19345 1.20010 1.18234 1.19644 0.95029 0.89241 1.40862 0.89143 1.19245 0.88310 0.93391 0.90064 1.23160 0.99299 0.89376 1.11881 1.67728 1.08610 1.29973 1.07660 1.22305 0.89805 0.96851 1.15752 1.20649 0.89150 0.91317 0.95762 1.59161 1.03532 1.56806 1.02126 1.21854 0.92003 0.99800 0.91892 1.21444 0.95316 1.01219 0.95992 1.22629 0.81121 0.98440 0.96591 0.91929 1.88717 1.23434 1.92833 1.24066 1.23546 0.98224 0.99768 0.81293 1.22679 0.96438 1.01155 0.98312 1.22524 0.95643 1.01015 0.94867 0.89035 1.21727 0.91861 0.99087 0.91504 1.69439 1.08778 1.24680 1.16802 0.91425 0.84902 0.85140 0.92067 0.90959 0.90929 0.90697 0.92334 0.89995 0.90565 0.90402 0.90904 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.61 11.51 55.55 0.64 -16.97 16 2 C 0.07 1.63 5.49 -17.34 -0.10 1.53 16 3 Si 0.91 17.54 29.57 -169.99 -5.03 12.51 16 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 7 C -0.42 -10.42 9.15 -37.75 -0.35 -10.77 16 8 H 0.09 2.10 7.85 -52.49 -0.41 1.69 16 9 C 0.22 5.70 6.54 -84.83 -0.55 5.15 16 10 C -0.07 -1.68 10.97 -16.58 -0.18 -1.86 16 11 N -0.43 -10.53 10.47 -12.11 -0.13 -10.66 16 12 C -0.09 -2.05 11.17 -16.78 -0.19 -2.24 16 13 C 0.27 6.34 5.30 -155.01 -0.82 5.52 16 14 N -0.49 -9.78 4.48 -172.97 -0.77 -10.55 16 15 C 0.07 1.35 5.26 -3.68 -0.02 1.33 16 16 C -0.10 -1.57 6.11 -27.07 -0.17 -1.74 16 17 C 0.07 1.09 2.78 -26.14 -0.07 1.02 16 18 H 0.06 1.06 7.99 -51.93 -0.42 0.64 16 19 O -0.37 -5.65 11.52 -35.23 -0.41 -6.05 16 20 C 0.05 0.58 7.73 38.30 0.30 0.87 16 21 C -0.15 -1.79 6.70 -25.53 -0.17 -1.96 16 22 C -0.12 -1.80 2.78 -89.82 -0.25 -2.05 16 23 H 0.09 1.37 8.12 -51.93 -0.42 0.95 16 24 C 0.09 1.54 5.13 -3.97 -0.02 1.52 16 25 N -0.48 -12.29 7.43 -10.14 -0.08 -12.36 16 26 H 0.27 6.19 8.29 -40.82 -0.34 5.85 16 27 H 0.13 2.97 8.06 -52.49 -0.42 2.55 16 28 H 0.13 2.80 8.06 -52.49 -0.42 2.38 16 29 H 0.06 1.31 7.78 -51.93 -0.40 0.91 16 30 H 0.07 1.37 8.13 -51.93 -0.42 0.94 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.92 8.05 -51.93 -0.42 0.50 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.05 1.08 8.03 -51.93 -0.42 0.66 16 LS Contribution 310.61 15.07 4.68 4.68 Total: -1.00 -27.78 310.61 -9.10 -36.88 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.43 Total: 6.22 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -2.59 Total: -3.69 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.34 Total: -50.55 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.41 Total: -6.05 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.78 -9.10 -36.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167213688.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.178 kcal (2) G-P(sol) polarization free energy of solvation -27.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds