Wall clock time and date at job start Mon Mar 30 2020 02:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86807 * 119.99822 * 2 1 4 4 H 1.48496 * 109.47402 * 274.98822 * 3 2 1 5 5 H 1.48497 * 109.46884 * 34.99160 * 3 2 1 6 6 H 1.48502 * 109.46698 * 154.98927 * 3 2 1 7 7 C 1.40059 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00326 * 186.30733 * 7 2 1 9 9 C 1.41275 * 119.99634 * 6.29794 * 7 2 1 10 10 C 1.40725 * 120.15393 * 173.79569 * 9 7 2 11 11 N 1.31905 * 119.92536 * 180.02562 * 10 9 7 12 12 C 1.32153 * 120.27342 * 0.02562 * 11 10 9 13 13 C 1.39924 * 120.32233 * 359.97438 * 12 11 10 14 14 N 1.38833 * 119.96888 * 179.97438 * 13 12 11 15 15 C 1.46349 * 110.99814 * 123.95152 * 14 13 12 16 16 C 1.53857 * 111.71155 * 181.59398 * 15 14 13 17 17 C 1.51455 * 107.06120 * 303.78415 * 16 15 14 18 18 H 1.09003 * 109.38174 * 303.90098 * 17 16 15 19 19 O 1.42151 * 118.22146 * 177.48161 * 17 16 15 20 20 C 1.45122 * 105.10656 * 197.94421 * 19 17 16 21 21 C 1.55154 * 107.05692 * 27.09245 * 20 19 17 22 22 C 1.53111 * 102.99371 * 1.94953 * 21 20 19 23 23 H 1.09001 * 110.79366 * 90.33048 * 22 21 20 24 24 C 1.47767 * 110.93920 * 251.94898 * 14 13 12 25 25 N 1.32259 * 120.06121 * 0.26159 * 13 12 11 26 26 H 0.97001 * 120.00419 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.03696 * 0.04263 * 10 9 7 28 28 H 1.07997 * 119.83967 * 180.02562 * 12 11 10 29 29 H 1.09005 * 109.02997 * 61.02555 * 15 14 13 30 30 H 1.08992 * 108.97697 * 302.13280 * 15 14 13 31 31 H 1.08998 * 109.93713 * 184.39386 * 16 15 14 32 32 H 1.09002 * 109.93226 * 63.16964 * 16 15 14 33 33 H 1.08997 * 109.92107 * 267.73768 * 20 19 17 34 34 H 1.09000 * 110.07725 * 146.53267 * 20 19 17 35 35 H 1.08992 * 110.70883 * 243.56670 * 21 20 19 36 36 H 1.09004 * 110.70370 * 120.32196 * 21 20 19 37 37 H 1.09004 * 110.86900 * 55.41906 * 24 14 13 38 38 H 1.08997 * 109.03680 * 294.19641 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.3833 2.1074 -1.3947 5 1 1.4954 2.6199 0.8029 6 1 3.5875 1.4120 0.5920 7 6 2.0076 -1.2129 -0.0005 8 1 3.0827 -1.2158 0.1022 9 6 1.3076 -2.4326 -0.1353 10 6 2.0144 -3.6424 -0.2674 11 7 1.3562 -4.7785 -0.3934 12 6 0.0347 -4.7861 -0.3968 13 6 -0.6789 -3.5897 -0.2662 14 7 -2.0672 -3.6061 -0.2712 15 6 -2.6034 -2.9785 0.9372 16 6 -4.1411 -3.0229 0.9672 17 6 -4.6297 -2.3571 -0.3023 18 1 -4.2177 -1.3499 -0.3642 19 8 -6.0299 -2.3168 -0.5441 20 6 -6.1610 -2.0390 -1.9625 21 6 -4.8835 -2.5852 -2.6531 22 6 -4.1054 -3.2109 -1.4924 23 1 -4.3738 -4.2600 -1.3676 24 6 -2.5974 -3.0432 -1.5304 25 7 -0.0322 -2.4425 -0.1437 26 1 -0.4851 0.8400 0.0004 27 1 3.0943 -3.6405 -0.2652 28 1 -0.4970 -5.7205 -0.5000 29 1 -2.2772 -1.9390 0.9725 30 1 -2.2155 -3.5024 1.8107 31 1 -4.5116 -2.4812 1.8374 32 1 -4.4823 -4.0576 0.9993 33 1 -6.2400 -0.9640 -2.1246 34 1 -7.0424 -2.5404 -2.3621 35 1 -4.3137 -1.7741 -3.1065 36 1 -5.1401 -3.3400 -3.3965 37 1 -2.1869 -3.5676 -2.3933 38 1 -2.3424 -1.9848 -1.5818 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167213688.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:48 Heat of formation + Delta-G solvation = -8.137858 kcal Electronic energy + Delta-G solvation = -21778.862018 eV Core-core repulsion = 18620.495022 eV Total energy + Delta-G solvation = -3158.366996 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.72133 -40.72739 -38.19581 -35.95166 -34.23240 -33.56098 -32.99813 -30.67950 -29.76913 -27.95521 -25.42338 -24.43064 -23.97606 -22.89600 -22.07678 -21.13176 -19.53673 -18.16287 -17.18146 -17.10952 -16.99222 -16.74730 -16.54273 -16.38728 -16.05186 -15.05292 -14.76792 -14.62334 -14.27083 -13.86268 -13.53536 -13.37579 -13.33672 -13.07632 -13.01601 -12.70835 -12.34385 -12.30075 -12.11926 -12.00431 -11.70393 -11.67397 -11.50862 -11.22189 -10.88680 -10.60145 -9.91304 -9.64456 -9.19804 -8.39802 -6.68467 0.52700 1.03918 1.38330 1.49640 1.52697 2.15318 2.58911 2.71868 2.80858 3.57337 3.62741 3.70734 3.88407 4.00969 4.08603 4.12635 4.21113 4.23992 4.37121 4.43759 4.49900 4.52836 4.66828 4.74293 4.79440 4.87429 4.88520 4.91685 4.95208 5.06158 5.07772 5.18358 5.26209 5.29163 5.63326 5.86172 5.97408 6.03456 6.20814 6.53454 6.78734 7.27742 7.83973 8.25402 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017664 B = 0.006231 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.757515 B = 4492.909255 C = 5484.270949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.026 3.974 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.250 1.250 7 C -0.438 4.438 8 H 0.102 0.898 9 C 0.186 3.814 10 C -0.084 4.084 11 N -0.435 5.435 12 C -0.097 4.097 13 C 0.266 3.734 14 N -0.486 5.486 15 C 0.080 3.920 16 C -0.091 4.091 17 C 0.074 3.926 18 H 0.042 0.958 19 O -0.383 6.383 20 C 0.044 3.956 21 C -0.142 4.142 22 C -0.114 4.114 23 H 0.099 0.901 24 C 0.092 3.908 25 N -0.498 5.498 26 H 0.281 0.719 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.703 0.603 -3.030 10.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.173 1.173 7 C -0.469 4.469 8 H 0.120 0.880 9 C 0.059 3.941 10 C -0.253 4.253 11 N -0.147 5.147 12 C -0.257 4.257 13 C 0.027 3.973 14 N -0.210 5.210 15 C -0.048 4.048 16 C -0.129 4.129 17 C 0.016 3.984 18 H 0.060 0.940 19 O -0.302 6.302 20 C -0.032 4.032 21 C -0.180 4.180 22 C -0.133 4.133 23 H 0.117 0.883 24 C -0.034 4.034 25 N -0.219 5.219 26 H 0.092 0.908 27 H 0.167 0.833 28 H 0.169 0.831 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.128 0.872 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -10.235 0.241 -2.850 10.627 hybrid contribution 0.994 1.505 -0.086 1.805 sum -9.241 1.746 -2.935 9.852 Atomic orbital electron populations 1.70163 1.08993 1.29530 1.27703 1.27041 0.95729 1.04683 0.92327 0.85059 0.79328 0.75328 0.79296 1.18918 1.19420 1.17318 1.20063 0.95838 0.89828 1.41205 0.87969 1.19705 0.88942 0.94509 0.90920 1.23385 1.00146 0.89165 1.12611 1.67738 1.09190 1.29959 1.07805 1.22665 0.89773 0.97719 1.15582 1.21023 0.90728 0.90900 0.94666 1.59285 1.01693 1.56814 1.03202 1.21774 0.94418 0.97386 0.91207 1.21336 0.92435 1.02311 0.96790 1.22456 0.81755 0.97443 0.96763 0.93970 1.88701 1.22462 1.92929 1.26140 1.23784 0.99001 1.00795 0.79583 1.22698 0.95979 1.01555 0.97762 1.22457 0.93096 1.01529 0.96214 0.88302 1.21671 0.94293 0.96907 0.90555 1.69470 1.08962 1.25855 1.17640 0.90814 0.83264 0.83138 0.95464 0.91572 0.89571 0.89297 0.91518 0.87239 0.90894 0.87915 0.91083 0.95978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.52 11.51 21.84 0.25 -37.27 16 2 C 0.03 1.22 5.49 85.30 0.47 1.69 16 3 Si 0.99 35.65 29.57 68.60 2.03 37.67 16 4 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 5 H -0.27 -9.39 7.11 99.48 0.71 -8.68 16 6 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 7 C -0.44 -22.28 9.15 23.46 0.21 -22.07 16 8 H 0.10 4.76 7.85 -2.91 -0.02 4.74 16 9 C 0.19 10.03 6.54 40.17 0.26 10.30 16 10 C -0.08 -4.26 10.97 85.29 0.94 -3.32 16 11 N -0.43 -21.62 10.47 -192.23 -2.01 -23.63 16 12 C -0.10 -4.61 11.17 85.05 0.95 -3.66 16 13 C 0.27 12.77 5.30 133.36 0.71 13.47 16 14 N -0.49 -19.53 4.48 -701.15 -3.14 -22.67 16 15 C 0.08 3.03 5.26 86.70 0.46 3.49 16 16 C -0.09 -2.73 6.11 30.38 0.19 -2.54 16 17 C 0.07 2.23 2.78 30.98 0.09 2.32 16 18 H 0.04 1.45 7.99 -2.39 -0.02 1.43 16 19 O -0.38 -10.81 11.52 -148.98 -1.72 -12.52 16 20 C 0.04 0.93 7.73 72.72 0.56 1.50 16 21 C -0.14 -3.12 6.70 31.37 0.21 -2.91 16 22 C -0.11 -3.24 2.78 -10.27 -0.03 -3.26 16 23 H 0.10 2.72 8.12 -2.39 -0.02 2.70 16 24 C 0.09 3.37 5.13 85.73 0.44 3.81 16 25 N -0.50 -26.56 7.43 -185.99 -1.38 -27.94 16 26 H 0.28 12.91 8.29 -92.71 -0.77 12.15 16 27 H 0.15 6.77 8.06 -2.91 -0.02 6.74 16 28 H 0.15 6.38 8.06 -2.91 -0.02 6.35 16 29 H 0.03 1.22 7.78 -2.38 -0.02 1.20 16 30 H 0.07 2.55 8.13 -2.39 -0.02 2.53 16 31 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.09 2.46 8.12 -2.39 -0.02 2.44 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.66 8.05 -2.39 -0.02 1.64 16 36 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 38 H 0.02 0.94 8.03 -2.39 -0.02 0.92 16 Total: -1.00 -60.72 310.61 0.53 -60.20 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 1.05 Total: 27.35 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 5.45 Total: -1.18 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -6.28 Total: -111.52 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -1.72 Total: -12.52 kcal Atomic # 14 Polarization: 35.65 SS G_CDS: 2.03 Total: 37.67 kcal Total: -60.72 0.53 -60.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167213688.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.058 kcal (2) G-P(sol) polarization free energy of solvation -60.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds