Wall clock time and date at job start Mon Mar 30 2020 02:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86805 * 120.00028 * 2 1 4 4 H 1.48498 * 109.47343 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46938 * 299.99789 * 3 2 1 6 6 H 1.48501 * 109.47145 * 59.99760 * 3 2 1 7 7 C 1.40060 * 120.00426 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00385 * 186.33255 * 7 2 1 9 9 C 1.41272 * 119.99345 * 6.33325 * 7 2 1 10 10 C 1.40722 * 120.15766 * 173.83439 * 9 7 2 11 11 N 1.31899 * 119.93212 * 179.97438 * 10 9 7 12 12 C 1.32152 * 120.27090 * 359.72586 * 11 10 9 13 13 C 1.39915 * 120.32376 * 0.52543 * 12 11 10 14 14 N 1.38831 * 119.97500 * 179.74692 * 13 12 11 15 15 C 1.46352 * 111.00445 * 235.77539 * 14 13 12 16 16 C 1.53876 * 111.62249 * 178.21711 * 15 14 13 17 17 C 1.51270 * 107.12849 * 55.91511 * 16 15 14 18 18 H 1.09000 * 108.25773 * 54.66243 * 17 16 15 19 19 O 1.41248 * 119.13680 * 179.41159 * 17 16 15 20 20 C 1.44615 * 108.06055 * 151.68893 * 19 17 16 21 21 C 1.55449 * 107.31775 * 353.63161 * 20 19 17 22 22 C 1.53776 * 101.07049 * 338.38213 * 21 20 19 23 23 H 1.09004 * 111.40590 * 280.39082 * 22 21 20 24 24 C 1.47894 * 110.88416 * 107.41943 * 14 13 12 25 25 N 1.32271 * 120.06152 * 359.48087 * 13 12 11 26 26 H 0.97002 * 119.99819 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.02816 * 359.94638 * 10 9 7 28 28 H 1.08006 * 119.84162 * 180.26021 * 12 11 10 29 29 H 1.08996 * 109.05241 * 57.66559 * 15 14 13 30 30 H 1.08998 * 108.99517 * 298.72728 * 15 14 13 31 31 H 1.09003 * 109.92514 * 296.51594 * 16 15 14 32 32 H 1.09000 * 109.99180 * 175.35991 * 16 15 14 33 33 H 1.09008 * 109.87316 * 234.20401 * 20 19 17 34 34 H 1.08996 * 109.87317 * 113.06870 * 20 19 17 35 35 H 1.08995 * 111.10073 * 220.42742 * 21 20 19 36 36 H 1.08999 * 111.09504 * 96.33413 * 21 20 19 37 37 H 1.08994 * 108.49221 * 66.22894 * 24 14 13 38 38 H 1.09000 * 111.48589 * 304.97702 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3465 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8825 2.3965 1.2125 7 6 2.0076 -1.2129 0.0005 8 1 3.0826 -1.2157 0.1037 9 6 1.3077 -2.4326 -0.1339 10 6 2.0143 -3.6426 -0.2641 11 7 1.3563 -4.7789 -0.3888 12 6 0.0348 -4.7872 -0.3867 13 6 -0.6789 -3.5901 -0.2632 14 7 -2.0671 -3.6066 -0.2671 15 6 -2.5992 -2.7316 -1.3126 16 6 -4.1367 -2.7731 -1.3585 17 6 -4.6336 -2.4094 0.0231 18 1 -4.1958 -1.4510 0.3022 19 8 -6.0248 -2.3580 0.2622 20 6 -6.2515 -2.6631 1.6575 21 6 -4.8838 -3.0786 2.2685 22 6 -4.1106 -3.4946 1.0060 23 1 -4.3880 -4.4978 0.6821 24 6 -2.6013 -3.3380 1.0856 25 7 -0.0322 -2.4431 -0.1374 26 1 -0.4850 0.8401 0.0004 27 1 3.0944 -3.6406 -0.2623 28 1 -0.4969 -5.7221 -0.4850 29 1 -2.2057 -3.0505 -2.2778 30 1 -2.2766 -1.7089 -1.1175 31 1 -4.4736 -3.7756 -1.6224 32 1 -4.5073 -2.0530 -2.0881 33 1 -6.9620 -3.4850 1.7464 34 1 -6.6349 -1.7820 2.1719 35 1 -4.9989 -3.9189 2.9530 36 1 -4.4026 -2.2349 2.7632 37 1 -2.3482 -2.3140 1.3602 38 1 -2.1942 -4.0322 1.8207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167213694.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:55 Heat of formation + Delta-G solvation = 9.571183 kcal Electronic energy + Delta-G solvation = -21766.615392 eV Core-core repulsion = 18609.016317 eV Total energy + Delta-G solvation = -3157.599074 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.34972 -39.05539 -36.69476 -34.09751 -32.70448 -32.30097 -31.23501 -29.00008 -28.51737 -26.08566 -23.93514 -23.02100 -22.18198 -21.37095 -20.80427 -19.74492 -17.68400 -16.41230 -16.26643 -15.60914 -15.29734 -15.06937 -15.02840 -14.86006 -14.61552 -13.55871 -13.14478 -13.04038 -12.83468 -12.57367 -12.19350 -11.84778 -11.63230 -11.52021 -11.43928 -11.22674 -10.99698 -10.90574 -10.75232 -10.65599 -10.40527 -9.94675 -9.86972 -9.59467 -9.33192 -9.03653 -8.14857 -7.77513 -7.37851 -6.57016 -4.75921 2.38594 2.84880 2.97481 3.01650 3.12597 3.76854 3.78059 4.26513 4.54111 4.65310 4.81011 4.94743 5.22922 5.36510 5.49504 5.55398 5.58079 5.67997 5.71543 5.80978 5.91228 5.94586 5.97502 6.02409 6.16476 6.21299 6.24301 6.31691 6.43123 6.50869 6.73497 6.77865 6.90966 7.10942 7.13960 7.45824 7.59589 7.83310 8.05885 8.39959 8.66843 9.18643 9.74012 10.04435 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018037 B = 0.006138 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.034679 B = 4560.964964 C = 5527.492617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.068 3.932 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.416 4.416 8 H 0.091 0.909 9 C 0.218 3.782 10 C -0.068 4.068 11 N -0.428 5.428 12 C -0.087 4.087 13 C 0.270 3.730 14 N -0.494 5.494 15 C 0.074 3.926 16 C -0.104 4.104 17 C 0.075 3.925 18 H 0.057 0.943 19 O -0.376 6.376 20 C 0.053 3.947 21 C -0.149 4.149 22 C -0.122 4.122 23 H 0.094 0.906 24 C 0.086 3.914 25 N -0.476 5.476 26 H 0.274 0.726 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.675 -0.711 2.391 9.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.448 4.448 8 H 0.109 0.891 9 C 0.090 3.910 10 C -0.237 4.237 11 N -0.140 5.140 12 C -0.248 4.248 13 C 0.032 3.968 14 N -0.218 5.218 15 C -0.054 4.054 16 C -0.142 4.142 17 C 0.017 3.983 18 H 0.075 0.925 19 O -0.295 6.295 20 C -0.024 4.024 21 C -0.187 4.187 22 C -0.141 4.141 23 H 0.112 0.888 24 C -0.041 4.041 25 N -0.197 5.197 26 H 0.086 0.914 27 H 0.151 0.849 28 H 0.148 0.852 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.187 -0.952 2.116 9.476 hybrid contribution 0.689 1.530 0.386 1.722 sum -8.498 0.578 2.502 8.878 Atomic orbital electron populations 1.70076 1.07383 1.28118 1.27800 1.26113 0.94953 1.01385 0.93329 0.86204 0.80957 0.80677 0.78702 1.18122 1.19668 1.19750 1.19668 0.95038 0.89227 1.40827 0.89120 1.19250 0.88307 0.93380 0.90085 1.23158 0.99297 0.89354 1.11920 1.67724 1.08613 1.29995 1.07633 1.22302 0.89808 0.96877 1.15770 1.20647 0.89143 0.91412 0.95647 1.59065 1.03509 1.54094 1.05170 1.21850 0.91953 0.97115 0.94479 1.21459 0.95296 1.02312 0.95132 1.22314 0.81155 0.97902 0.96972 0.92500 1.88213 1.23714 1.91415 1.26166 1.23527 0.97074 0.99912 0.81853 1.22919 0.95633 1.02174 0.97985 1.22731 0.95898 1.00386 0.95074 0.88782 1.21759 0.91684 1.00916 0.89718 1.69448 1.08785 1.24904 1.16576 0.91442 0.84907 0.85153 0.90971 0.91968 0.90864 0.90929 0.91056 0.91665 0.90003 0.90393 0.92991 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.64 11.51 55.55 0.64 -17.00 16 2 C 0.07 1.63 5.49 -17.34 -0.10 1.53 16 3 Si 0.91 17.56 29.56 -169.99 -5.03 12.54 16 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 6 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.42 -10.43 9.15 -37.75 -0.35 -10.78 16 8 H 0.09 2.11 7.85 -52.49 -0.41 1.70 16 9 C 0.22 5.70 6.54 -84.83 -0.55 5.15 16 10 C -0.07 -1.68 10.97 -16.59 -0.18 -1.86 16 11 N -0.43 -10.53 10.47 -12.11 -0.13 -10.65 16 12 C -0.09 -2.06 11.17 -16.79 -0.19 -2.24 16 13 C 0.27 6.34 5.29 -155.00 -0.82 5.52 16 14 N -0.49 -9.81 4.46 -172.75 -0.77 -10.58 16 15 C 0.07 1.38 5.25 -3.67 -0.02 1.36 16 16 C -0.10 -1.61 6.14 -27.15 -0.17 -1.78 16 17 C 0.07 1.16 2.82 -26.29 -0.07 1.09 16 18 H 0.06 0.98 7.88 -51.93 -0.41 0.57 16 19 O -0.38 -5.74 11.38 -35.02 -0.40 -6.14 16 20 C 0.05 0.63 7.82 38.46 0.30 0.93 16 21 C -0.15 -1.79 6.62 -25.03 -0.17 -1.96 16 22 C -0.12 -1.79 2.86 -89.44 -0.26 -2.05 16 23 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 24 C 0.09 1.55 5.17 -3.81 -0.02 1.53 16 25 N -0.48 -12.30 7.44 -10.14 -0.08 -12.38 16 26 H 0.27 6.20 8.29 -40.82 -0.34 5.86 16 27 H 0.13 2.97 8.06 -52.48 -0.42 2.55 16 28 H 0.13 2.79 8.06 -52.48 -0.42 2.37 16 29 H 0.07 1.37 8.13 -51.93 -0.42 0.95 16 30 H 0.06 1.34 7.78 -51.93 -0.40 0.94 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.96 8.13 -51.93 -0.42 0.53 16 37 H 0.05 1.06 7.99 -51.93 -0.41 0.65 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 310.60 15.07 4.68 4.68 Total: -1.00 -27.85 310.60 -9.09 -36.94 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.42 Total: 6.16 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -2.59 Total: -3.57 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.33 Total: -50.61 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.40 Total: -6.14 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.85 -9.09 -36.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167213694.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.512 kcal (2) G-P(sol) polarization free energy of solvation -27.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds