Wall clock time and date at job start Mon Mar 30 2020 02:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86805 * 120.00028 * 2 1 4 4 H 1.48498 * 109.47343 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46938 * 299.99789 * 3 2 1 6 6 H 1.48501 * 109.47145 * 59.99760 * 3 2 1 7 7 C 1.40060 * 120.00426 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00385 * 186.33255 * 7 2 1 9 9 C 1.41272 * 119.99345 * 6.33325 * 7 2 1 10 10 C 1.40722 * 120.15766 * 173.83439 * 9 7 2 11 11 N 1.31899 * 119.93212 * 179.97438 * 10 9 7 12 12 C 1.32152 * 120.27090 * 359.72586 * 11 10 9 13 13 C 1.39915 * 120.32376 * 0.52543 * 12 11 10 14 14 N 1.38831 * 119.97500 * 179.74692 * 13 12 11 15 15 C 1.46352 * 111.00445 * 235.77539 * 14 13 12 16 16 C 1.53876 * 111.62249 * 178.21711 * 15 14 13 17 17 C 1.51270 * 107.12849 * 55.91511 * 16 15 14 18 18 H 1.09000 * 108.25773 * 54.66243 * 17 16 15 19 19 O 1.41248 * 119.13680 * 179.41159 * 17 16 15 20 20 C 1.44615 * 108.06055 * 151.68893 * 19 17 16 21 21 C 1.55449 * 107.31775 * 353.63161 * 20 19 17 22 22 C 1.53776 * 101.07049 * 338.38213 * 21 20 19 23 23 H 1.09004 * 111.40590 * 280.39082 * 22 21 20 24 24 C 1.47894 * 110.88416 * 107.41943 * 14 13 12 25 25 N 1.32271 * 120.06152 * 359.48087 * 13 12 11 26 26 H 0.97002 * 119.99819 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.02816 * 359.94638 * 10 9 7 28 28 H 1.08006 * 119.84162 * 180.26021 * 12 11 10 29 29 H 1.08996 * 109.05241 * 57.66559 * 15 14 13 30 30 H 1.08998 * 108.99517 * 298.72728 * 15 14 13 31 31 H 1.09003 * 109.92514 * 296.51594 * 16 15 14 32 32 H 1.09000 * 109.99180 * 175.35991 * 16 15 14 33 33 H 1.09008 * 109.87316 * 234.20401 * 20 19 17 34 34 H 1.08996 * 109.87317 * 113.06870 * 20 19 17 35 35 H 1.08995 * 111.10073 * 220.42742 * 21 20 19 36 36 H 1.08999 * 111.09504 * 96.33413 * 21 20 19 37 37 H 1.08994 * 108.49221 * 66.22894 * 24 14 13 38 38 H 1.09000 * 111.48589 * 304.97702 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3465 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8825 2.3965 1.2125 7 6 2.0076 -1.2129 0.0005 8 1 3.0826 -1.2157 0.1037 9 6 1.3077 -2.4326 -0.1339 10 6 2.0143 -3.6426 -0.2641 11 7 1.3563 -4.7789 -0.3888 12 6 0.0348 -4.7872 -0.3867 13 6 -0.6789 -3.5901 -0.2632 14 7 -2.0671 -3.6066 -0.2671 15 6 -2.5992 -2.7316 -1.3126 16 6 -4.1367 -2.7731 -1.3585 17 6 -4.6336 -2.4094 0.0231 18 1 -4.1958 -1.4510 0.3022 19 8 -6.0248 -2.3580 0.2622 20 6 -6.2515 -2.6631 1.6575 21 6 -4.8838 -3.0786 2.2685 22 6 -4.1106 -3.4946 1.0060 23 1 -4.3880 -4.4978 0.6821 24 6 -2.6013 -3.3380 1.0856 25 7 -0.0322 -2.4431 -0.1374 26 1 -0.4850 0.8401 0.0004 27 1 3.0944 -3.6406 -0.2623 28 1 -0.4969 -5.7221 -0.4850 29 1 -2.2057 -3.0505 -2.2778 30 1 -2.2766 -1.7089 -1.1175 31 1 -4.4736 -3.7756 -1.6224 32 1 -4.5073 -2.0530 -2.0881 33 1 -6.9620 -3.4850 1.7464 34 1 -6.6349 -1.7820 2.1719 35 1 -4.9989 -3.9189 2.9530 36 1 -4.4026 -2.2349 2.7632 37 1 -2.3482 -2.3140 1.3602 38 1 -2.1942 -4.0322 1.8207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167213694.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:55 Heat of formation + Delta-G solvation = -7.947983 kcal Electronic energy + Delta-G solvation = -21767.375080 eV Core-core repulsion = 18609.016317 eV Total energy + Delta-G solvation = -3158.358762 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.72722 -40.73788 -38.20257 -35.95256 -34.24938 -33.58203 -33.00600 -30.68534 -29.79173 -27.95727 -25.46902 -24.41875 -23.92153 -22.81145 -22.16229 -21.14851 -19.54473 -18.13471 -17.43947 -17.13039 -16.99531 -16.74488 -16.47500 -16.29863 -16.03167 -15.01244 -14.70144 -14.56960 -14.35914 -13.90861 -13.56270 -13.37636 -13.34435 -13.05093 -13.03844 -12.72373 -12.38662 -12.29979 -12.12736 -11.99571 -11.77200 -11.70928 -11.50685 -11.20275 -10.88176 -10.47360 -9.89754 -9.66038 -9.18794 -8.39840 -6.68475 0.52768 1.03831 1.38308 1.48668 1.54021 2.15237 2.55996 2.71443 2.77449 3.51263 3.62165 3.68620 3.87631 3.99166 4.08841 4.14805 4.21887 4.27928 4.34296 4.43151 4.49318 4.51543 4.65611 4.75691 4.78960 4.86639 4.89050 4.92937 4.95416 5.03433 5.07867 5.18384 5.26657 5.32666 5.63265 5.96304 5.99219 6.03086 6.20932 6.53527 6.78742 7.27893 7.84144 8.25302 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018037 B = 0.006138 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.034679 B = 4560.964964 C = 5527.492617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.025 3.975 3 Si 0.990 3.010 4 H -0.249 1.249 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.438 4.438 8 H 0.102 0.898 9 C 0.187 3.813 10 C -0.085 4.085 11 N -0.435 5.435 12 C -0.097 4.097 13 C 0.266 3.734 14 N -0.487 5.487 15 C 0.081 3.919 16 C -0.093 4.093 17 C 0.079 3.921 18 H 0.032 0.968 19 O -0.389 6.389 20 C 0.048 3.952 21 C -0.142 4.142 22 C -0.114 4.114 23 H 0.105 0.895 24 C 0.093 3.907 25 N -0.499 5.499 26 H 0.281 0.719 27 H 0.150 0.850 28 H 0.152 0.848 29 H 0.065 0.935 30 H 0.027 0.973 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.020 0.980 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.768 -0.621 2.851 10.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.172 1.172 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.120 0.880 9 C 0.059 3.941 10 C -0.253 4.253 11 N -0.147 5.147 12 C -0.257 4.257 13 C 0.027 3.973 14 N -0.211 5.211 15 C -0.046 4.046 16 C -0.131 4.131 17 C 0.021 3.979 18 H 0.050 0.950 19 O -0.309 6.309 20 C -0.027 4.027 21 C -0.180 4.180 22 C -0.133 4.133 23 H 0.123 0.877 24 C -0.034 4.034 25 N -0.220 5.220 26 H 0.092 0.908 27 H 0.167 0.833 28 H 0.169 0.831 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.127 0.873 36 H 0.089 0.911 37 H 0.038 0.962 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.284 -0.882 2.584 10.640 hybrid contribution 0.972 1.472 0.263 1.784 sum -9.312 0.590 2.847 9.755 Atomic orbital electron populations 1.70169 1.09010 1.29479 1.27772 1.27046 0.95722 1.04708 0.92321 0.85023 0.79729 0.75537 0.78723 1.17171 1.19327 1.19153 1.20081 0.95830 0.89815 1.41210 0.87967 1.19708 0.88936 0.94499 0.90934 1.23378 1.00139 0.89138 1.12654 1.67737 1.09202 1.29963 1.07777 1.22668 0.89764 0.97760 1.15509 1.21026 0.90730 0.90996 0.94557 1.59195 1.01662 1.53987 1.06291 1.21763 0.94377 0.94768 0.93728 1.21344 0.92420 1.03596 0.95729 1.22128 0.81742 0.97005 0.97009 0.95004 1.88194 1.22741 1.91649 1.28283 1.23779 0.97240 1.01558 0.80150 1.22932 0.95096 1.02895 0.97100 1.22668 0.93277 1.00658 0.96688 0.87653 1.21716 0.94165 0.98897 0.88593 1.69479 1.08980 1.26127 1.17401 0.90837 0.83280 0.83081 0.91654 0.95447 0.89285 0.89741 0.88547 0.90309 0.87332 0.91121 0.96194 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.74 11.51 21.84 0.25 -37.48 16 2 C 0.03 1.22 5.49 85.30 0.47 1.69 16 3 Si 0.99 35.81 29.56 68.60 2.03 37.83 16 4 H -0.25 -8.56 7.11 99.48 0.71 -7.85 16 5 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 6 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 7 C -0.44 -22.33 9.15 23.46 0.21 -22.12 16 8 H 0.10 4.78 7.85 -2.92 -0.02 4.76 16 9 C 0.19 10.05 6.54 40.17 0.26 10.31 16 10 C -0.08 -4.26 10.97 85.29 0.94 -3.32 16 11 N -0.43 -21.58 10.47 -192.23 -2.01 -23.59 16 12 C -0.10 -4.57 11.17 85.05 0.95 -3.62 16 13 C 0.27 12.76 5.29 133.35 0.71 13.46 16 14 N -0.49 -19.55 4.46 -700.47 -3.13 -22.67 16 15 C 0.08 3.11 5.25 86.70 0.46 3.57 16 16 C -0.09 -2.81 6.14 30.32 0.19 -2.63 16 17 C 0.08 2.42 2.82 30.88 0.09 2.50 16 18 H 0.03 1.13 7.88 -2.39 -0.02 1.11 16 19 O -0.39 -11.07 11.38 -148.21 -1.69 -12.76 16 20 C 0.05 1.00 7.82 72.82 0.57 1.57 16 21 C -0.14 -3.09 6.62 31.70 0.21 -2.88 16 22 C -0.11 -3.19 2.86 -10.03 -0.03 -3.22 16 23 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 24 C 0.09 3.36 5.17 85.77 0.44 3.81 16 25 N -0.50 -26.63 7.44 -186.00 -1.38 -28.02 16 26 H 0.28 12.97 8.29 -92.71 -0.77 12.20 16 27 H 0.15 6.76 8.06 -2.91 -0.02 6.74 16 28 H 0.15 6.36 8.06 -2.91 -0.02 6.34 16 29 H 0.06 2.55 8.13 -2.39 -0.02 2.53 16 30 H 0.03 1.24 7.78 -2.39 -0.02 1.22 16 31 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.65 8.13 -2.39 -0.02 1.63 16 37 H 0.02 0.84 7.99 -2.39 -0.02 0.82 16 38 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -61.15 310.60 0.58 -60.57 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 1.05 Total: 27.01 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 5.46 Total: -0.88 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -6.27 Total: -111.76 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -1.69 Total: -12.76 kcal Atomic # 14 Polarization: 35.81 SS G_CDS: 2.03 Total: 37.83 kcal Total: -61.15 0.58 -60.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167213694.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.618 kcal (2) G-P(sol) polarization free energy of solvation -61.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds