Wall clock time and date at job start Mon Mar 30 2020 02:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99807 * 2 1 4 4 H 1.48497 * 109.46985 * 239.99914 * 3 2 1 5 5 H 1.48495 * 109.47406 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47050 * 120.00165 * 3 2 1 7 7 C 1.37873 * 119.99790 * 179.97438 * 2 1 3 8 8 C 1.51269 * 120.84830 * 180.02562 * 7 2 1 9 9 C 1.53238 * 108.48535 * 231.36997 * 8 7 2 10 10 C 1.52961 * 109.39468 * 305.26260 * 9 8 7 11 11 H 1.08998 * 109.41429 * 303.63408 * 10 9 8 12 12 N 1.46504 * 109.41409 * 183.77079 * 10 9 8 13 13 C 1.31993 * 119.99864 * 124.81193 * 12 10 9 14 14 C 1.46798 * 121.16855 * 354.23820 * 13 12 10 15 15 C 1.34767 * 118.76607 * 180.02562 * 14 13 12 16 16 N 1.35763 * 121.46215 * 0.02562 * 15 14 13 17 17 H 0.96994 * 118.65903 * 179.97438 * 16 15 14 18 18 C 1.37017 * 122.67968 * 0.02562 * 16 15 14 19 19 C 1.47960 * 119.49413 * 179.97438 * 18 16 15 20 20 N 1.34769 * 120.00163 * 0.27093 * 19 18 16 21 21 O 1.21531 * 119.99538 * 179.97438 * 19 18 16 22 22 C 1.35694 * 121.00746 * 0.23016 * 18 16 15 23 23 C 1.52963 * 109.75707 * 63.70780 * 10 9 8 24 24 C 1.51268 * 120.85273 * 0.02562 * 7 2 1 25 25 H 0.97003 * 119.99626 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.62613 * 351.04482 * 8 7 2 27 27 H 1.09004 * 109.62843 * 111.61081 * 8 7 2 28 28 H 1.08998 * 109.42971 * 185.32652 * 9 8 7 29 29 H 1.08996 * 109.54257 * 65.27593 * 9 8 7 30 30 H 1.07999 * 120.62015 * 0.04351 * 14 13 12 31 31 H 1.08002 * 119.27463 * 180.02562 * 15 14 13 32 32 H 0.97003 * 120.00111 * 179.72294 * 20 19 18 33 33 H 0.97005 * 119.99948 * 359.73290 * 20 19 18 34 34 H 1.07999 * 120.78992 * 179.72365 * 22 18 16 35 35 H 1.08997 * 109.48718 * 56.34611 * 23 10 9 36 36 H 1.09006 * 109.47877 * 176.38684 * 23 10 9 37 37 H 1.08998 * 109.62626 * 8.95549 * 24 7 2 38 38 H 1.09004 * 109.62610 * 248.38841 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 6 3.5171 -1.2165 0.0011 9 6 3.9898 -2.1311 -1.1338 10 6 3.3403 -3.5075 -0.9809 11 1 3.5740 -3.9110 0.0043 12 7 3.8606 -4.4088 -2.0122 13 6 4.4109 -5.5580 -1.6678 14 6 4.6287 -5.9037 -0.2578 15 6 5.1951 -7.0901 0.0390 16 7 5.5645 -7.9620 -0.9338 17 1 5.9691 -8.8045 -0.6742 18 6 5.3901 -7.7001 -2.2673 19 6 5.8194 -8.7013 -3.2686 20 7 6.3722 -9.8626 -2.8662 21 8 5.6687 -8.4786 -4.4538 22 6 4.8344 -6.5344 -2.6839 23 6 1.8233 -3.3832 -1.1328 24 6 1.2677 -2.5151 0.0005 25 1 -0.4850 0.8401 -0.0004 26 1 3.8983 -0.2079 -0.1588 27 1 3.8772 -1.5998 0.9559 28 1 5.0740 -2.2339 -1.0889 29 1 3.7047 -1.6991 -2.0930 30 1 4.3402 -5.2203 0.5271 31 1 5.3588 -7.3530 1.0736 32 1 6.6500 -10.5207 -3.5225 33 1 6.4921 -10.0406 -1.9201 34 1 4.7027 -6.3296 -3.7361 35 1 1.5906 -2.9209 -2.0921 36 1 1.3710 -4.3739 -1.0872 37 1 0.2038 -2.3409 -0.1597 38 1 1.4193 -3.0189 0.9553 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167845559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:15 Heat of formation + Delta-G solvation = 6.881499 kcal Electronic energy + Delta-G solvation = -20595.626288 eV Core-core repulsion = 17437.910580 eV Total energy + Delta-G solvation = -3157.715708 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.72870 -38.84001 -37.21104 -34.81163 -33.97071 -32.08821 -31.66579 -29.84461 -29.40469 -27.02550 -24.66991 -22.68770 -21.99532 -21.31962 -20.28449 -19.52392 -19.04614 -17.49519 -17.17890 -16.12175 -15.87370 -15.41768 -15.14346 -14.64150 -14.37671 -14.22982 -13.81789 -13.29448 -12.89450 -12.73614 -12.22793 -12.11717 -12.03595 -11.33577 -11.21822 -10.80004 -10.69825 -10.57882 -10.31463 -10.28327 -10.20372 -9.88418 -9.73038 -9.52649 -8.84481 -8.58638 -8.48333 -8.36139 -7.04079 -6.02917 -3.93171 0.83612 1.62345 2.66271 2.75421 2.88349 3.34620 3.40628 3.42603 3.78552 4.30783 4.45209 4.59528 4.78770 5.21419 5.25137 5.35732 5.60459 5.86966 5.97009 6.14144 6.15048 6.22237 6.34430 6.58926 6.64115 6.67550 6.83384 6.92899 6.97080 7.05359 7.07080 7.11223 7.18434 7.28417 7.50910 7.68158 7.72297 7.84789 7.91289 8.46372 8.52082 9.04026 9.61842 11.07022 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.040349 B = 0.003540 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.782298 B = 7907.567938 C = 7971.585345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.487 4.487 8 C -0.009 4.009 9 C -0.091 4.091 10 C 0.081 3.919 11 H 0.044 0.956 12 N -0.517 5.517 13 C 0.192 3.808 14 C -0.247 4.247 15 C 0.118 3.882 16 N -0.624 5.624 17 H 0.402 0.598 18 C 0.060 3.940 19 C 0.570 3.430 20 N -0.853 5.853 21 O -0.517 6.517 22 C -0.071 4.071 23 C -0.091 4.091 24 C 0.012 3.988 25 H 0.264 0.736 26 H 0.025 0.975 27 H 0.016 0.984 28 H 0.028 0.972 29 H 0.058 0.942 30 H 0.147 0.853 31 H 0.156 0.844 32 H 0.410 0.590 33 H 0.397 0.603 34 H 0.156 0.844 35 H 0.056 0.944 36 H 0.025 0.975 37 H 0.059 0.941 38 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.487 -20.494 0.687 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.506 4.506 8 C -0.047 4.047 9 C -0.129 4.129 10 C -0.028 4.028 11 H 0.061 0.939 12 N -0.230 5.230 13 C 0.010 3.990 14 C -0.275 4.275 15 C -0.008 4.008 16 N -0.239 5.239 17 H 0.236 0.764 18 C -0.047 4.047 19 C 0.354 3.646 20 N -0.418 5.418 21 O -0.391 6.391 22 C -0.099 4.099 23 C -0.130 4.130 24 C -0.026 4.026 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.034 0.966 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.164 0.836 31 H 0.173 0.827 32 H 0.242 0.758 33 H 0.226 0.774 34 H 0.173 0.827 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 12.813 -19.311 -0.837 23.191 hybrid contribution 0.898 -0.005 1.257 1.545 sum 13.711 -19.317 0.420 23.692 Atomic orbital electron populations 1.69831 1.06136 1.26954 1.50021 1.24839 0.94736 0.98510 0.94608 0.86657 0.79404 0.83048 0.78977 1.19923 1.21885 1.20087 1.20033 0.89278 0.91557 1.49729 1.19637 0.96823 0.94593 0.93686 1.21526 0.96036 0.94301 1.01057 1.21776 0.96497 0.92777 0.91791 0.93852 1.72965 1.10897 1.02357 1.36736 1.21298 0.95705 0.92476 0.89505 1.22631 1.08672 0.98186 0.98026 1.21233 0.96568 0.90535 0.92479 1.40625 1.59927 1.20230 1.03081 0.76422 1.19490 1.05292 0.96824 0.83143 1.17995 0.77150 0.81434 0.87973 1.43709 1.65965 1.20057 1.12042 1.90896 1.54306 1.77443 1.16483 1.22031 0.97302 0.90158 1.00398 1.21632 0.91656 0.97793 1.01883 1.19376 0.98639 0.92872 0.91698 0.92591 0.95639 0.96594 0.95359 0.92350 0.83601 0.82676 0.75813 0.77448 0.82669 0.92559 0.95594 0.92290 0.98057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 12.73 55.43 0.71 -25.77 16 2 C 0.08 2.14 5.46 -17.82 -0.10 2.04 16 3 Si 0.89 22.03 26.80 -169.99 -4.56 17.47 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.49 -13.41 5.51 -98.92 -0.55 -13.95 16 8 C -0.01 -0.23 5.59 -27.48 -0.15 -0.38 16 9 C -0.09 -2.07 5.54 -26.63 -0.15 -2.22 16 10 C 0.08 1.76 2.62 -67.97 -0.18 1.58 16 11 H 0.04 0.91 5.24 -51.93 -0.27 0.64 16 12 N -0.52 -10.55 10.23 -49.37 -0.51 -11.05 16 13 C 0.19 3.22 6.98 -80.72 -0.56 2.66 16 14 C -0.25 -3.35 9.44 -37.35 -0.35 -3.70 16 15 C 0.12 1.02 11.12 -17.04 -0.19 0.83 16 16 N -0.62 -4.44 5.25 -9.76 -0.05 -4.49 16 17 H 0.40 1.09 6.93 -40.82 -0.28 0.80 16 18 C 0.06 0.63 6.77 -82.48 -0.56 0.07 16 19 C 0.57 5.48 8.07 -12.28 -0.10 5.38 16 20 N -0.85 -3.67 8.86 30.55 0.27 -3.40 16 21 O -0.52 -7.20 17.09 5.34 0.09 -7.11 16 22 C -0.07 -1.02 9.80 -36.88 -0.36 -1.38 16 23 C -0.09 -2.17 5.54 -26.65 -0.15 -2.31 16 24 C 0.01 0.31 5.97 -27.51 -0.16 0.15 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.03 0.61 5.17 -51.93 -0.27 0.35 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.15 2.10 5.93 -52.49 -0.31 1.79 16 31 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.41 1.28 8.93 -40.82 -0.36 0.92 16 33 H 0.40 0.38 7.00 -40.82 -0.29 0.09 16 34 H 0.16 2.33 7.57 -52.49 -0.40 1.94 16 35 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 1.68 7.07 -51.93 -0.37 1.31 16 38 H 0.00 0.03 8.14 -51.93 -0.42 -0.40 16 LS Contribution 309.76 15.07 4.67 4.67 Total: -1.00 -35.54 309.76 -7.58 -43.12 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -4.64 Total: -2.20 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -3.56 Total: -11.24 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.42 Total: -44.71 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: 0.09 Total: -7.11 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.56 Total: 17.47 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.54 -7.58 -43.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.005 kcal (2) G-P(sol) polarization free energy of solvation -35.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds