Wall clock time and date at job start Mon Mar 30 2020 02:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99807 * 2 1 4 4 H 1.48497 * 109.46985 * 239.99914 * 3 2 1 5 5 H 1.48495 * 109.47406 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47050 * 120.00165 * 3 2 1 7 7 C 1.37873 * 119.99790 * 179.97438 * 2 1 3 8 8 C 1.51269 * 120.84830 * 180.02562 * 7 2 1 9 9 C 1.53238 * 108.48535 * 231.36997 * 8 7 2 10 10 C 1.52961 * 109.39468 * 305.26260 * 9 8 7 11 11 H 1.08998 * 109.41429 * 303.63408 * 10 9 8 12 12 N 1.46504 * 109.41409 * 183.77079 * 10 9 8 13 13 C 1.31993 * 119.99864 * 124.81193 * 12 10 9 14 14 C 1.46798 * 121.16855 * 354.23820 * 13 12 10 15 15 C 1.34767 * 118.76607 * 180.02562 * 14 13 12 16 16 N 1.35763 * 121.46215 * 0.02562 * 15 14 13 17 17 H 0.96994 * 118.65903 * 179.97438 * 16 15 14 18 18 C 1.37017 * 122.67968 * 0.02562 * 16 15 14 19 19 C 1.47960 * 119.49413 * 179.97438 * 18 16 15 20 20 N 1.34769 * 120.00163 * 0.27093 * 19 18 16 21 21 O 1.21531 * 119.99538 * 179.97438 * 19 18 16 22 22 C 1.35694 * 121.00746 * 0.23016 * 18 16 15 23 23 C 1.52963 * 109.75707 * 63.70780 * 10 9 8 24 24 C 1.51268 * 120.85273 * 0.02562 * 7 2 1 25 25 H 0.97003 * 119.99626 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.62613 * 351.04482 * 8 7 2 27 27 H 1.09004 * 109.62843 * 111.61081 * 8 7 2 28 28 H 1.08998 * 109.42971 * 185.32652 * 9 8 7 29 29 H 1.08996 * 109.54257 * 65.27593 * 9 8 7 30 30 H 1.07999 * 120.62015 * 0.04351 * 14 13 12 31 31 H 1.08002 * 119.27463 * 180.02562 * 15 14 13 32 32 H 0.97003 * 120.00111 * 179.72294 * 20 19 18 33 33 H 0.97005 * 119.99948 * 359.73290 * 20 19 18 34 34 H 1.07999 * 120.78992 * 179.72365 * 22 18 16 35 35 H 1.08997 * 109.48718 * 56.34611 * 23 10 9 36 36 H 1.09006 * 109.47877 * 176.38684 * 23 10 9 37 37 H 1.08998 * 109.62626 * 8.95549 * 24 7 2 38 38 H 1.09004 * 109.62610 * 248.38841 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 6 3.5171 -1.2165 0.0011 9 6 3.9898 -2.1311 -1.1338 10 6 3.3403 -3.5075 -0.9809 11 1 3.5740 -3.9110 0.0043 12 7 3.8606 -4.4088 -2.0122 13 6 4.4109 -5.5580 -1.6678 14 6 4.6287 -5.9037 -0.2578 15 6 5.1951 -7.0901 0.0390 16 7 5.5645 -7.9620 -0.9338 17 1 5.9691 -8.8045 -0.6742 18 6 5.3901 -7.7001 -2.2673 19 6 5.8194 -8.7013 -3.2686 20 7 6.3722 -9.8626 -2.8662 21 8 5.6687 -8.4786 -4.4538 22 6 4.8344 -6.5344 -2.6839 23 6 1.8233 -3.3832 -1.1328 24 6 1.2677 -2.5151 0.0005 25 1 -0.4850 0.8401 -0.0004 26 1 3.8983 -0.2079 -0.1588 27 1 3.8772 -1.5998 0.9559 28 1 5.0740 -2.2339 -1.0889 29 1 3.7047 -1.6991 -2.0930 30 1 4.3402 -5.2203 0.5271 31 1 5.3588 -7.3530 1.0736 32 1 6.6500 -10.5207 -3.5225 33 1 6.4921 -10.0406 -1.9201 34 1 4.7027 -6.3296 -3.7361 35 1 1.5906 -2.9209 -2.0921 36 1 1.3710 -4.3739 -1.0872 37 1 0.2038 -2.3409 -0.1597 38 1 1.4193 -3.0189 0.9553 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167845559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:15 Heat of formation + Delta-G solvation = -22.760194 kcal Electronic energy + Delta-G solvation = -20596.911649 eV Core-core repulsion = 17437.910580 eV Total energy + Delta-G solvation = -3159.001068 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.64301 -39.81501 -38.85025 -36.15699 -34.88171 -33.85863 -32.68450 -31.54442 -31.02837 -28.68067 -25.75883 -24.04042 -23.35398 -23.17034 -21.61045 -20.65079 -20.32530 -18.33864 -18.08305 -17.92111 -17.10128 -16.45316 -16.28071 -16.16938 -15.63359 -15.23880 -15.06151 -14.89176 -14.60144 -14.41544 -14.10018 -13.61136 -13.22759 -13.04155 -12.95520 -12.74580 -12.50979 -12.07865 -11.86399 -11.83567 -11.57319 -11.39747 -10.92991 -10.84375 -10.61868 -10.57364 -10.51730 -9.77649 -8.20296 -8.16112 -6.12216 -0.17029 0.65443 1.37315 1.39925 1.47673 1.77592 1.87583 2.21102 2.39855 2.70526 3.06903 3.47259 3.76803 3.88452 4.07689 4.26255 4.32942 4.35648 4.59702 4.69992 4.72769 4.88301 4.93378 5.04394 5.12181 5.17171 5.21181 5.28584 5.35637 5.54392 5.58305 5.63038 5.70984 5.75240 5.86359 5.92305 6.19901 6.35096 6.44064 6.92581 7.06331 7.28170 7.45070 8.93439 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.040349 B = 0.003540 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.782298 B = 7907.567938 C = 7971.585345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.019 3.981 3 Si 0.946 3.054 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.260 1.260 7 C -0.501 4.501 8 C -0.009 4.009 9 C -0.085 4.085 10 C 0.097 3.903 11 H 0.050 0.950 12 N -0.597 5.597 13 C 0.208 3.792 14 C -0.303 4.303 15 C 0.173 3.827 16 N -0.591 5.591 17 H 0.433 0.567 18 C 0.102 3.898 19 C 0.572 3.428 20 N -0.817 5.817 21 O -0.562 6.562 22 C -0.126 4.126 23 C -0.081 4.081 24 C 0.013 3.987 25 H 0.264 0.736 26 H 0.027 0.973 27 H 0.029 0.971 28 H 0.045 0.955 29 H 0.032 0.968 30 H 0.135 0.865 31 H 0.218 0.782 32 H 0.423 0.577 33 H 0.418 0.582 34 H 0.134 0.866 35 H 0.026 0.974 36 H 0.031 0.969 37 H 0.025 0.975 38 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.961 -24.181 2.595 29.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.178 4.178 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.184 1.184 7 C -0.520 4.520 8 C -0.047 4.047 9 C -0.124 4.124 10 C -0.012 4.012 11 H 0.068 0.932 12 N -0.314 5.314 13 C 0.030 3.970 14 C -0.331 4.331 15 C 0.045 3.955 16 N -0.205 5.205 17 H 0.273 0.727 18 C -0.008 4.008 19 C 0.355 3.645 20 N -0.384 5.384 21 O -0.440 6.440 22 C -0.154 4.154 23 C -0.119 4.119 24 C -0.025 4.025 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.153 0.847 31 H 0.234 0.766 32 H 0.257 0.743 33 H 0.251 0.749 34 H 0.152 0.848 35 H 0.044 0.956 36 H 0.050 0.950 37 H 0.044 0.956 38 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 16.356 -23.114 1.124 28.338 hybrid contribution 0.003 0.625 0.722 0.955 sum 16.359 -22.489 1.847 27.871 Atomic orbital electron populations 1.69975 1.07680 1.27589 1.52044 1.25654 0.95468 1.01926 0.94800 0.85749 0.78365 0.79132 0.79513 1.19634 1.21695 1.18416 1.20644 0.91218 0.91881 1.48303 1.19647 0.94748 0.95317 0.94940 1.21414 0.97117 0.94971 0.98863 1.21351 0.94125 0.92838 0.92926 0.93203 1.72951 1.17809 1.05002 1.35600 1.21831 0.92087 0.91245 0.91789 1.22514 1.13616 1.01070 0.95934 1.21965 0.90841 0.87900 0.94783 1.40864 1.56841 1.21040 1.01737 0.72714 1.19557 1.01287 0.95292 0.84693 1.17851 0.77441 0.82390 0.86855 1.43443 1.63146 1.18013 1.13795 1.90905 1.56272 1.78456 1.18333 1.21786 1.02151 0.92085 0.99385 1.21429 0.94510 0.96988 0.98993 1.19306 0.96800 0.93601 0.92806 0.92727 0.95411 0.95272 0.93660 0.94871 0.84693 0.76586 0.74337 0.74921 0.84845 0.95553 0.95006 0.95644 0.97627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 12.73 21.45 0.27 -57.63 16 2 C 0.02 1.14 5.46 84.65 0.46 1.60 16 3 Si 0.95 46.08 26.80 68.60 1.84 47.92 16 4 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.50 -28.56 5.51 -16.17 -0.09 -28.65 16 8 C -0.01 -0.42 5.59 30.11 0.17 -0.25 16 9 C -0.09 -4.02 5.54 30.66 0.17 -3.85 16 10 C 0.10 4.42 2.62 44.97 0.12 4.54 16 11 H 0.05 2.14 5.24 -2.39 -0.01 2.12 16 12 N -0.60 -25.67 10.23 -310.12 -3.17 -28.85 16 13 C 0.21 7.04 6.98 43.70 0.30 7.34 16 14 C -0.30 -7.52 9.44 23.71 0.22 -7.29 16 15 C 0.17 1.97 11.12 83.29 0.93 2.90 16 16 N -0.59 -4.75 5.25 -184.80 -0.97 -5.72 16 17 H 0.43 -1.20 6.93 -92.71 -0.64 -1.85 16 18 C 0.10 1.79 6.77 40.32 0.27 2.06 16 19 C 0.57 9.06 8.07 86.82 0.70 9.76 16 20 N -0.82 -2.73 8.86 -175.54 -1.56 -4.28 16 21 O -0.56 -14.94 17.09 -3.81 -0.07 -15.00 16 22 C -0.13 -3.58 9.80 24.02 0.24 -3.34 16 23 C -0.08 -4.08 5.54 30.65 0.17 -3.91 16 24 C 0.01 0.71 5.97 30.09 0.18 0.89 16 25 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 26 H 0.03 1.33 5.17 -2.38 -0.01 1.32 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 28 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.14 3.69 5.93 -2.91 -0.02 3.68 16 31 H 0.22 0.11 8.06 -2.91 -0.02 0.08 16 32 H 0.42 0.55 8.93 -92.71 -0.83 -0.27 16 33 H 0.42 -2.10 7.00 -92.70 -0.65 -2.75 16 34 H 0.13 4.33 7.57 -2.91 -0.02 4.31 16 35 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.02 1.53 7.07 -2.39 -0.02 1.51 16 38 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 Total: -1.00 -86.67 309.76 -0.80 -87.47 By element: Atomic # 1 Polarization: -4.71 SS G_CDS: -0.99 Total: -5.70 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 3.84 Total: -18.21 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -5.43 Total: -96.48 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.07 Total: -15.00 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.84 Total: 47.92 kcal Total: -86.67 -0.80 -87.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.713 kcal (2) G-P(sol) polarization free energy of solvation -86.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds