Wall clock time and date at job start Mon Mar 30 2020 02:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99708 * 2 1 4 4 H 1.48500 * 109.46986 * 174.65925 * 3 2 1 5 5 H 1.48497 * 109.46882 * 294.65757 * 3 2 1 6 6 H 1.48493 * 109.47214 * 54.65860 * 3 2 1 7 7 C 1.37877 * 120.00348 * 179.97438 * 2 1 3 8 8 C 1.51266 * 120.84963 * 348.88535 * 7 2 1 9 9 C 1.53229 * 108.53579 * 231.32258 * 8 7 2 10 10 C 1.52954 * 109.40491 * 305.37475 * 9 8 7 11 11 H 1.09008 * 109.35673 * 303.52276 * 10 9 8 12 12 N 1.46503 * 109.41294 * 183.70368 * 10 9 8 13 13 C 1.39079 * 120.00074 * 84.64468 * 12 10 9 14 14 C 1.39444 * 120.40296 * 180.02562 * 13 12 10 15 15 C 1.38220 * 118.43110 * 179.72688 * 14 13 12 16 16 C 1.39532 * 119.15863 * 359.97438 * 15 14 13 17 17 C 1.47836 * 119.63913 * 180.02562 * 16 15 14 18 18 N 1.34775 * 120.00339 * 179.97438 * 17 16 15 19 19 O 1.21557 * 119.99995 * 0.02562 * 17 16 15 20 20 N 1.32841 * 120.72670 * 0.02562 * 16 15 14 21 21 C 1.31320 * 121.71046 * 359.97438 * 20 16 15 22 22 C 1.52952 * 109.82374 * 63.59775 * 10 9 8 23 23 C 1.51271 * 120.84883 * 168.86057 * 7 2 1 24 24 H 0.97003 * 120.00649 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.62454 * 351.03236 * 8 7 2 26 26 H 1.08998 * 109.62859 * 111.61274 * 8 7 2 27 27 H 1.08996 * 109.48573 * 185.39079 * 9 8 7 28 28 H 1.09011 * 109.48391 * 65.35291 * 9 8 7 29 29 H 0.96997 * 120.00321 * 264.63919 * 12 10 9 30 30 H 1.08002 * 120.78215 * 359.70179 * 14 13 12 31 31 H 1.08003 * 120.42123 * 179.97438 * 15 14 13 32 32 H 0.96999 * 119.99484 * 0.02562 * 18 17 16 33 33 H 0.96991 * 120.00497 * 180.02562 * 18 17 16 34 34 H 1.08006 * 119.61048 * 179.97438 * 21 20 16 35 35 H 1.09001 * 109.48488 * 56.37796 * 22 10 9 36 36 H 1.08998 * 109.49041 * 176.42661 * 22 10 9 37 37 H 1.09002 * 109.62588 * 8.95887 * 23 7 2 38 38 H 1.09004 * 109.62289 * 248.38504 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7037 1.3495 0.1303 5 1 1.9906 2.3385 -1.2724 6 1 1.7951 2.4514 1.1420 7 6 2.0045 -1.1940 0.0005 8 6 1.2889 -2.5028 0.2515 9 6 2.0331 -3.2611 1.3556 10 6 3.5044 -3.4119 0.9655 11 1 3.5726 -3.9119 -0.0007 12 7 4.1970 -4.2127 1.9781 13 6 4.1660 -5.6013 1.9072 14 6 4.8218 -6.3718 2.8667 15 6 4.7596 -7.7485 2.7602 16 6 4.0472 -8.3171 1.7038 17 6 3.9733 -9.7884 1.5799 18 7 3.2868 -10.3455 0.5627 19 8 4.5310 -10.4958 2.3961 20 7 3.4346 -7.5509 0.8080 21 6 3.4733 -6.2402 0.8790 22 6 4.1601 -2.0332 0.8719 23 6 3.4959 -1.2287 -0.2504 24 1 -0.4851 0.8400 0.0004 25 1 0.2651 -2.3052 0.5692 26 1 1.2834 -3.0981 -0.6616 27 1 1.5878 -4.2478 1.4828 28 1 1.9601 -2.7058 2.2908 29 1 4.6773 -3.7745 2.6979 30 1 5.3658 -5.9038 3.6739 31 1 5.2562 -8.3761 3.4855 32 1 2.8415 -9.7809 -0.0884 33 1 3.2380 -11.3108 0.4816 34 1 2.9632 -5.6500 0.1320 35 1 4.0367 -1.5069 1.8185 36 1 5.2222 -2.1495 0.6562 37 1 3.8901 -0.2124 -0.2551 38 1 3.6947 -1.7060 -1.2099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167845917.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:44 Heat of formation + Delta-G solvation = -18.458294 kcal Electronic energy + Delta-G solvation = -20685.055145 eV Core-core repulsion = 17526.240621 eV Total energy + Delta-G solvation = -3158.814524 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.50409 -38.93626 -37.54106 -34.80607 -33.64020 -32.36933 -31.72633 -29.81921 -29.58069 -27.04346 -24.18989 -23.55245 -21.81611 -21.51917 -20.80285 -19.63574 -18.16096 -17.30637 -16.97403 -16.20150 -15.78219 -15.23722 -14.96649 -14.58233 -14.39881 -14.05128 -13.80331 -13.30407 -13.09999 -13.01317 -12.67300 -12.39635 -12.22957 -11.64588 -11.48111 -11.09509 -10.86817 -10.50193 -10.37138 -10.25241 -10.06918 -9.70034 -9.59077 -9.51348 -9.48674 -9.10640 -8.78811 -8.51702 -7.42573 -6.22493 -4.12800 0.97396 1.35067 2.87170 3.17473 3.25647 3.28623 3.42767 3.57844 4.04674 4.27739 4.44305 4.85980 4.88790 5.03895 5.11980 5.29996 5.43731 5.65969 5.69652 5.90709 6.00022 6.08811 6.29421 6.38758 6.46490 6.57788 6.61788 6.73045 6.76852 6.88794 6.97830 7.24369 7.31277 7.36471 7.50197 7.59587 7.70885 7.72195 7.95710 8.25399 8.30443 8.84460 9.42662 10.86771 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.040534 B = 0.003638 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.613177 B = 7694.237658 C = 8081.335386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.078 3.922 3 Si 0.878 3.122 4 H -0.256 1.256 5 H -0.282 1.282 6 H -0.286 1.286 7 C -0.494 4.494 8 C 0.013 3.987 9 C -0.121 4.121 10 C 0.151 3.849 11 H 0.075 0.925 12 N -0.717 5.717 13 C 0.212 3.788 14 C -0.186 4.186 15 C -0.052 4.052 16 C -0.022 4.022 17 C 0.588 3.412 18 N -0.842 5.842 19 O -0.555 6.555 20 N -0.414 5.414 21 C 0.025 3.975 22 C -0.113 4.113 23 C -0.021 4.021 24 H 0.265 0.735 25 H 0.056 0.944 26 H 0.007 0.993 27 H 0.035 0.965 28 H 0.052 0.948 29 H 0.399 0.601 30 H 0.136 0.864 31 H 0.141 0.859 32 H 0.411 0.589 33 H 0.400 0.600 34 H 0.165 0.835 35 H 0.056 0.944 36 H 0.038 0.962 37 H 0.045 0.955 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.625 -10.667 2.517 13.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.125 4.125 3 Si 0.706 3.294 4 H -0.181 1.181 5 H -0.208 1.208 6 H -0.212 1.212 7 C -0.513 4.513 8 C -0.025 4.025 9 C -0.160 4.160 10 C 0.048 3.952 11 H 0.093 0.907 12 N -0.339 5.339 13 C 0.099 3.901 14 C -0.216 4.216 15 C -0.073 4.073 16 C -0.161 4.161 17 C 0.374 3.626 18 N -0.404 5.404 19 O -0.433 6.433 20 N -0.125 5.125 21 C -0.143 4.143 22 C -0.152 4.152 23 C -0.059 4.059 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.025 0.975 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.233 0.767 30 H 0.153 0.847 31 H 0.159 0.841 32 H 0.241 0.759 33 H 0.230 0.770 34 H 0.182 0.818 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 7.309 -11.141 2.299 13.522 hybrid contribution 0.730 1.506 0.710 1.818 sum 8.039 -9.636 3.009 12.905 Atomic orbital electron populations 1.69891 1.06274 1.27028 1.48748 1.24852 0.94615 0.98629 0.94408 0.86763 0.80959 0.83744 0.77918 1.18143 1.20843 1.21200 1.19994 0.90839 0.92017 1.48403 1.19334 0.97413 0.93434 0.92278 1.22115 0.93649 0.98662 1.01578 1.21237 0.92895 0.91326 0.89761 0.90737 1.45372 1.55705 1.01731 1.31076 1.19206 0.91780 0.85566 0.93574 1.20976 1.05950 0.93347 1.01326 1.21723 0.94748 0.94456 0.96415 1.20477 1.05320 0.93181 0.97140 1.17799 0.77467 0.86787 0.80568 1.43639 1.55481 1.11130 1.30199 1.90786 1.47157 1.62912 1.42456 1.67259 1.14695 1.06203 1.24331 1.22463 1.02835 0.89734 0.99272 1.21858 0.96974 0.94431 1.01903 1.19916 0.96078 0.96543 0.93390 0.92528 0.92541 0.97502 0.94628 0.92892 0.76671 0.84655 0.84122 0.75881 0.77011 0.81840 0.92526 0.94312 0.93689 0.96181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.25 12.82 55.43 0.71 -23.54 16 2 C 0.08 2.02 5.44 -17.82 -0.10 1.92 16 3 Si 0.88 19.53 27.95 -169.99 -4.75 14.78 16 4 H -0.26 -5.37 5.58 56.52 0.32 -5.06 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.49 -11.95 5.48 -98.92 -0.54 -12.50 16 8 C 0.01 0.31 5.93 -27.49 -0.16 0.14 16 9 C -0.12 -2.28 5.42 -26.64 -0.14 -2.43 16 10 C 0.15 2.45 2.05 -67.98 -0.14 2.31 16 11 H 0.07 1.23 6.50 -51.92 -0.34 0.89 16 12 N -0.72 -9.64 5.23 -52.08 -0.27 -9.91 16 13 C 0.21 2.88 6.66 -83.67 -0.56 2.32 16 14 C -0.19 -2.26 10.03 -39.14 -0.39 -2.65 16 15 C -0.05 -0.67 9.62 -39.11 -0.38 -1.05 16 16 C -0.02 -0.32 6.74 -83.02 -0.56 -0.88 16 17 C 0.59 8.17 8.07 -12.33 -0.10 8.07 16 18 N -0.84 -8.57 8.86 30.53 0.27 -8.30 16 19 O -0.56 -9.16 17.15 5.32 0.09 -9.06 16 20 N -0.41 -5.92 9.52 -9.63 -0.09 -6.01 16 21 C 0.03 0.36 9.96 -17.31 -0.17 0.19 16 22 C -0.11 -1.96 5.40 -26.63 -0.14 -2.11 16 23 C -0.02 -0.44 5.65 -27.48 -0.16 -0.60 16 24 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.06 1.45 7.19 -51.93 -0.37 1.07 16 26 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.04 0.63 7.70 -51.93 -0.40 0.24 16 28 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 29 H 0.40 4.64 8.62 -40.82 -0.35 4.29 16 30 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.14 1.68 7.63 -52.48 -0.40 1.28 16 32 H 0.41 3.75 8.15 -40.82 -0.33 3.42 16 33 H 0.40 3.19 8.93 -40.82 -0.36 2.82 16 34 H 0.16 2.36 6.14 -52.48 -0.32 2.04 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.04 0.95 4.36 -51.93 -0.23 0.72 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 310.07 15.07 4.67 4.67 Total: -1.00 -28.59 310.07 -7.78 -36.37 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -4.87 Total: 8.26 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -3.54 Total: -7.25 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 0.62 Total: -47.77 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.75 Total: 14.78 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.59 -7.78 -36.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845917.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.909 kcal (2) G-P(sol) polarization free energy of solvation -28.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds