Wall clock time and date at job start Mon Mar 30 2020 02:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99708 * 2 1 4 4 H 1.48500 * 109.46986 * 174.65925 * 3 2 1 5 5 H 1.48497 * 109.46882 * 294.65757 * 3 2 1 6 6 H 1.48493 * 109.47214 * 54.65860 * 3 2 1 7 7 C 1.37877 * 120.00348 * 179.97438 * 2 1 3 8 8 C 1.51266 * 120.84963 * 348.88535 * 7 2 1 9 9 C 1.53229 * 108.53579 * 231.32258 * 8 7 2 10 10 C 1.52954 * 109.40491 * 305.37475 * 9 8 7 11 11 H 1.09008 * 109.35673 * 303.52276 * 10 9 8 12 12 N 1.46503 * 109.41294 * 183.70368 * 10 9 8 13 13 C 1.39079 * 120.00074 * 84.64468 * 12 10 9 14 14 C 1.39444 * 120.40296 * 180.02562 * 13 12 10 15 15 C 1.38220 * 118.43110 * 179.72688 * 14 13 12 16 16 C 1.39532 * 119.15863 * 359.97438 * 15 14 13 17 17 C 1.47836 * 119.63913 * 180.02562 * 16 15 14 18 18 N 1.34775 * 120.00339 * 179.97438 * 17 16 15 19 19 O 1.21557 * 119.99995 * 0.02562 * 17 16 15 20 20 N 1.32841 * 120.72670 * 0.02562 * 16 15 14 21 21 C 1.31320 * 121.71046 * 359.97438 * 20 16 15 22 22 C 1.52952 * 109.82374 * 63.59775 * 10 9 8 23 23 C 1.51271 * 120.84883 * 168.86057 * 7 2 1 24 24 H 0.97003 * 120.00649 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.62454 * 351.03236 * 8 7 2 26 26 H 1.08998 * 109.62859 * 111.61274 * 8 7 2 27 27 H 1.08996 * 109.48573 * 185.39079 * 9 8 7 28 28 H 1.09011 * 109.48391 * 65.35291 * 9 8 7 29 29 H 0.96997 * 120.00321 * 264.63919 * 12 10 9 30 30 H 1.08002 * 120.78215 * 359.70179 * 14 13 12 31 31 H 1.08003 * 120.42123 * 179.97438 * 15 14 13 32 32 H 0.96999 * 119.99484 * 0.02562 * 18 17 16 33 33 H 0.96991 * 120.00497 * 180.02562 * 18 17 16 34 34 H 1.08006 * 119.61048 * 179.97438 * 21 20 16 35 35 H 1.09001 * 109.48488 * 56.37796 * 22 10 9 36 36 H 1.08998 * 109.49041 * 176.42661 * 22 10 9 37 37 H 1.09002 * 109.62588 * 8.95887 * 23 7 2 38 38 H 1.09004 * 109.62289 * 248.38504 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7037 1.3495 0.1303 5 1 1.9906 2.3385 -1.2724 6 1 1.7951 2.4514 1.1420 7 6 2.0045 -1.1940 0.0005 8 6 1.2889 -2.5028 0.2515 9 6 2.0331 -3.2611 1.3556 10 6 3.5044 -3.4119 0.9655 11 1 3.5726 -3.9119 -0.0007 12 7 4.1970 -4.2127 1.9781 13 6 4.1660 -5.6013 1.9072 14 6 4.8218 -6.3718 2.8667 15 6 4.7596 -7.7485 2.7602 16 6 4.0472 -8.3171 1.7038 17 6 3.9733 -9.7884 1.5799 18 7 3.2868 -10.3455 0.5627 19 8 4.5310 -10.4958 2.3961 20 7 3.4346 -7.5509 0.8080 21 6 3.4733 -6.2402 0.8790 22 6 4.1601 -2.0332 0.8719 23 6 3.4959 -1.2287 -0.2504 24 1 -0.4851 0.8400 0.0004 25 1 0.2651 -2.3052 0.5692 26 1 1.2834 -3.0981 -0.6616 27 1 1.5878 -4.2478 1.4828 28 1 1.9601 -2.7058 2.2908 29 1 4.6773 -3.7745 2.6979 30 1 5.3658 -5.9038 3.6739 31 1 5.2562 -8.3761 3.4855 32 1 2.8415 -9.7809 -0.0884 33 1 3.2380 -11.3108 0.4816 34 1 2.9632 -5.6500 0.1320 35 1 4.0367 -1.5069 1.8185 36 1 5.2222 -2.1495 0.6562 37 1 3.8901 -0.2124 -0.2551 38 1 3.6947 -1.7060 -1.2099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167845917.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:43 Heat of formation + Delta-G solvation = -39.172554 kcal Electronic energy + Delta-G solvation = -20685.953383 eV Core-core repulsion = 17526.240621 eV Total energy + Delta-G solvation = -3159.712761 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.56692 -40.06802 -38.89625 -36.19459 -34.68947 -33.85106 -32.95271 -31.44302 -30.84890 -28.52184 -25.26488 -24.83076 -23.38942 -23.02217 -21.86720 -21.12910 -19.15238 -18.53768 -18.02573 -17.76928 -16.93328 -16.38183 -16.31914 -16.04606 -15.60405 -15.20375 -15.04426 -14.78936 -14.47125 -14.20144 -14.05616 -13.98935 -13.62832 -13.12045 -13.01296 -12.72283 -12.55032 -11.94224 -11.85296 -11.62253 -11.39220 -11.19361 -10.85144 -10.67487 -10.62342 -10.56285 -10.49966 -10.37305 -8.53547 -8.15412 -6.08230 -0.08681 0.33516 1.40821 1.45689 1.53092 1.81069 2.31455 2.43744 2.60904 2.98806 3.13660 3.41568 3.85779 3.87209 4.03379 4.16637 4.22370 4.35099 4.48411 4.69582 4.75165 4.91216 4.99371 5.01681 5.06643 5.12705 5.20966 5.26656 5.33453 5.54421 5.62349 5.65756 5.80523 5.86316 5.88945 6.17223 6.35876 6.36802 6.69855 6.93059 6.98875 7.33867 7.49653 8.95444 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.040534 B = 0.003638 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.613177 B = 7694.237658 C = 8081.335386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.019 3.981 3 Si 0.932 3.068 4 H -0.229 1.229 5 H -0.288 1.288 6 H -0.293 1.293 7 C -0.498 4.498 8 C 0.009 3.991 9 C -0.108 4.108 10 C 0.165 3.835 11 H 0.075 0.925 12 N -0.708 5.708 13 C 0.206 3.794 14 C -0.170 4.170 15 C -0.057 4.057 16 C -0.035 4.035 17 C 0.584 3.416 18 N -0.823 5.823 19 O -0.586 6.586 20 N -0.420 5.420 21 C 0.010 3.990 22 C -0.107 4.107 23 C -0.025 4.025 24 H 0.261 0.739 25 H 0.017 0.983 26 H 0.002 0.998 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.412 0.588 30 H 0.167 0.833 31 H 0.152 0.848 32 H 0.418 0.582 33 H 0.412 0.588 34 H 0.159 0.841 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.171 -11.181 3.209 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.153 1.153 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.517 4.517 8 C -0.029 4.029 9 C -0.147 4.147 10 C 0.061 3.939 11 H 0.093 0.907 12 N -0.332 5.332 13 C 0.094 3.906 14 C -0.200 4.200 15 C -0.079 4.079 16 C -0.174 4.174 17 C 0.369 3.631 18 N -0.386 5.386 19 O -0.467 6.467 20 N -0.131 5.131 21 C -0.158 4.158 22 C -0.145 4.145 23 C -0.063 4.063 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.020 0.980 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.249 0.751 30 H 0.185 0.815 31 H 0.169 0.831 32 H 0.249 0.751 33 H 0.244 0.756 34 H 0.176 0.824 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 9.876 -11.679 2.972 15.581 hybrid contribution -0.114 1.525 0.448 1.594 sum 9.762 -10.153 3.420 14.494 Atomic orbital electron populations 1.70043 1.08022 1.27379 1.51738 1.25659 0.95178 1.02052 0.94994 0.85904 0.81315 0.79831 0.77112 1.15256 1.21474 1.21947 1.20658 0.92960 0.92030 1.46059 1.19291 0.96068 0.94049 0.93461 1.21887 0.95523 0.98043 0.99238 1.20836 0.91000 0.91551 0.90524 0.90676 1.44978 1.55769 1.01469 1.30982 1.19229 0.92059 0.85504 0.93786 1.21262 1.04732 0.92792 1.01198 1.21928 0.94549 0.95098 0.96289 1.20700 1.05632 0.93429 0.97619 1.17882 0.77588 0.86750 0.80882 1.43515 1.54005 1.12018 1.29088 1.90768 1.48744 1.63419 1.43759 1.67219 1.14987 1.06263 1.24632 1.22494 1.03525 0.89919 0.99864 1.21718 0.98353 0.94057 1.00369 1.19930 0.93844 0.97496 0.95041 0.93020 0.96398 0.98011 0.93909 0.93913 0.75141 0.81549 0.83071 0.75089 0.75621 0.82360 0.92437 0.91270 0.93587 0.95728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.23 12.82 21.45 0.28 -52.96 16 2 C 0.02 1.01 5.44 84.66 0.46 1.47 16 3 Si 0.93 40.04 27.95 68.60 1.92 41.96 16 4 H -0.23 -8.73 5.58 99.48 0.56 -8.17 16 5 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.50 -24.07 5.48 -16.17 -0.09 -24.16 16 8 C 0.01 0.44 5.93 30.10 0.18 0.62 16 9 C -0.11 -3.98 5.42 30.66 0.17 -3.82 16 10 C 0.17 4.96 2.05 44.96 0.09 5.05 16 11 H 0.08 2.30 6.50 -2.38 -0.02 2.29 16 12 N -0.71 -16.64 5.23 -318.67 -1.67 -18.31 16 13 C 0.21 5.00 6.66 38.58 0.26 5.25 16 14 C -0.17 -3.53 10.03 22.56 0.23 -3.31 16 15 C -0.06 -1.34 9.62 22.58 0.22 -1.12 16 16 C -0.03 -0.93 6.74 41.85 0.28 -0.64 16 17 C 0.58 15.44 8.07 86.78 0.70 16.14 16 18 N -0.82 -15.54 8.86 -175.61 -1.56 -17.10 16 19 O -0.59 -18.70 17.15 -3.89 -0.07 -18.76 16 20 N -0.42 -11.38 9.52 -184.38 -1.76 -13.14 16 21 C 0.01 0.26 9.96 85.07 0.85 1.11 16 22 C -0.11 -3.34 5.40 30.66 0.17 -3.17 16 23 C -0.03 -0.99 5.65 30.11 0.17 -0.82 16 24 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 25 H 0.02 0.94 7.19 -2.39 -0.02 0.92 16 26 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 27 H 0.04 1.50 7.70 -2.39 -0.02 1.48 16 28 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.41 7.84 8.62 -92.71 -0.80 7.04 16 30 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 31 H 0.15 3.23 7.63 -2.91 -0.02 3.21 16 32 H 0.42 7.00 8.15 -92.71 -0.76 6.25 16 33 H 0.41 5.91 8.93 -92.71 -0.83 5.09 16 34 H 0.16 4.39 6.14 -2.91 -0.02 4.37 16 35 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.05 1.80 4.36 -2.39 -0.01 1.79 16 38 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -62.79 310.07 -0.58 -63.38 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -1.41 Total: 22.34 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 3.67 Total: -7.41 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -4.70 Total: -101.50 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.07 Total: -18.76 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 1.92 Total: 41.96 kcal Total: -62.79 -0.58 -63.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845917.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.203 kcal (2) G-P(sol) polarization free energy of solvation -62.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds