Wall clock time and date at job start Mon Mar 30 2020 01:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00303 * 2 1 4 4 H 1.48505 * 109.47177 * 270.00156 * 3 2 1 5 5 H 1.48503 * 109.47417 * 29.99586 * 3 2 1 6 6 H 1.48501 * 109.47677 * 150.00094 * 3 2 1 7 7 C 1.37878 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00022 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00361 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47457 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47085 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.46754 * 180.02562 * 11 10 9 13 13 C 1.39932 * 119.99864 * 180.02562 * 12 11 10 14 14 C 1.38742 * 120.14368 * 359.97438 * 13 12 11 15 15 C 1.38224 * 120.26051 * 179.97438 * 14 13 12 16 16 C 1.38478 * 120.09561 * 359.97438 * 15 14 13 17 17 C 1.37713 * 119.85460 * 0.02562 * 16 15 14 18 18 C 1.38868 * 120.67939 * 359.97438 * 17 16 15 19 19 N 1.39772 * 119.88919 * 180.02562 * 18 17 16 20 20 C 1.33934 * 122.91308 * 359.97438 * 19 18 17 21 21 O 1.21595 * 118.47773 * 180.02562 * 20 19 18 22 22 N 1.34526 * 123.03455 * 0.02562 * 20 19 18 23 23 C 1.47270 * 119.18942 * 0.02562 * 22 20 19 24 24 H 0.97000 * 119.99954 * 0.02562 * 1 2 3 25 25 H 1.09011 * 109.47194 * 59.99970 * 9 7 2 26 26 H 1.09003 * 109.47444 * 300.00458 * 9 7 2 27 27 H 1.08998 * 109.47216 * 60.00005 * 10 9 7 28 28 H 1.08999 * 109.47266 * 300.00135 * 10 9 7 29 29 H 1.08995 * 109.47478 * 60.00291 * 11 10 9 30 30 H 1.08995 * 109.47242 * 299.99627 * 11 10 9 31 31 H 0.97001 * 120.00233 * 359.97438 * 12 11 10 32 32 H 1.08003 * 119.86727 * 359.96159 * 14 13 12 33 33 H 1.08004 * 119.95528 * 180.02562 * 15 14 13 34 34 H 1.07994 * 120.06920 * 179.97438 * 16 15 14 35 35 H 0.96997 * 118.54463 * 180.27940 * 19 18 17 36 36 H 0.97002 * 120.40687 * 180.02562 * 22 20 19 37 37 H 1.08999 * 107.95795 * 121.88008 * 23 22 20 38 38 H 1.09000 * 107.95851 * 238.15556 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5515 -2.6366 0.0001 12 7 6.0397 -4.0179 -0.0004 13 6 7.4155 -4.2737 0.0001 14 6 8.3197 -3.2214 0.0005 15 6 9.6792 -3.4713 0.0016 16 6 10.1456 -4.7751 0.0027 17 6 9.2519 -5.8229 0.0023 18 6 7.8834 -5.5869 0.0013 19 7 6.9911 -6.6627 0.0014 20 6 7.3919 -7.9407 0.0020 21 8 6.5456 -8.8137 0.0016 22 7 8.6875 -8.3029 0.0030 23 6 9.7254 -7.2581 0.0041 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6797 0.8895 26 1 3.8745 -0.6809 -0.8905 27 1 3.6578 -3.1507 -0.8896 28 1 3.6585 -3.1503 0.8903 29 1 5.9148 -2.1228 0.8900 30 1 5.9148 -2.1230 -0.8899 31 1 5.4094 -4.7552 -0.0003 32 1 7.9599 -2.2031 -0.0001 33 1 10.3788 -2.6484 0.0023 34 1 11.2078 -4.9699 0.0031 35 1 6.0393 -6.4755 -0.0035 36 1 8.9350 -9.2408 0.0030 37 1 10.3500 -7.4058 0.8851 38 1 10.3511 -7.4051 -0.8763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433751.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:04 Heat of formation + Delta-G solvation = -7.281682 kcal Electronic energy + Delta-G solvation = -20280.246966 eV Core-core repulsion = 17121.917097 eV Total energy + Delta-G solvation = -3158.329869 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.31359 -39.15424 -36.72940 -35.35197 -34.88854 -33.50620 -31.79478 -30.64465 -29.06051 -26.64019 -26.20891 -23.93165 -22.82894 -21.82975 -20.42387 -19.70277 -18.58137 -17.94432 -16.85967 -16.56945 -16.20011 -16.08605 -15.36096 -15.04847 -14.86379 -14.33589 -14.18680 -13.99305 -13.72145 -13.41327 -13.14188 -12.72341 -12.27923 -12.06853 -11.79292 -11.56602 -11.07662 -11.03791 -10.88896 -10.55923 -10.28853 -10.04261 -9.83977 -9.75660 -9.54848 -9.28245 -8.60257 -8.35033 -7.25051 -6.10151 -4.09404 1.09191 1.37401 2.45756 2.88598 3.26076 3.27099 3.34047 3.36040 3.46979 3.66115 4.20304 4.39327 4.76326 4.83137 5.04096 5.05241 5.15653 5.23264 5.33406 5.41353 5.52006 5.52828 5.77039 5.84654 5.89182 6.20688 6.32492 6.35207 6.40161 6.61313 6.65326 6.68904 6.70638 7.13701 7.17759 7.28798 7.41464 7.63797 7.71531 8.20542 8.46273 8.93968 9.51349 11.03224 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026506 B = 0.003454 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.096052 B = 8104.635509 C = 9129.791825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.115 4.115 11 C 0.121 3.879 12 N -0.744 5.744 13 C 0.199 3.801 14 C -0.167 4.167 15 C -0.088 4.088 16 C -0.140 4.140 17 C -0.097 4.097 18 C 0.083 3.917 19 N -0.660 5.660 20 C 0.711 3.289 21 O -0.589 6.589 22 N -0.728 5.728 23 C 0.152 3.848 24 H 0.264 0.736 25 H 0.018 0.982 26 H 0.014 0.986 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.394 0.606 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.418 0.582 36 H 0.427 0.573 37 H 0.076 0.924 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.331 -10.499 0.021 26.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.153 4.153 11 C -0.002 4.002 12 N -0.373 5.373 13 C 0.092 3.908 14 C -0.191 4.191 15 C -0.108 4.108 16 C -0.161 4.161 17 C -0.101 4.101 18 C -0.016 4.016 19 N -0.309 5.309 20 C 0.410 3.590 21 O -0.467 6.467 22 N -0.389 5.389 23 C 0.027 3.973 24 H 0.074 0.926 25 H 0.036 0.964 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.229 0.771 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.256 0.744 36 H 0.267 0.733 37 H 0.094 0.906 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 23.763 -10.596 0.028 26.019 hybrid contribution -0.198 0.491 -0.026 0.530 sum 23.566 -10.104 0.002 25.641 Atomic orbital electron populations 1.69911 1.06345 1.26997 1.50808 1.25041 0.94756 0.99251 0.94462 0.86758 0.80325 0.83536 0.78526 1.20251 1.21343 1.18975 1.21095 0.89319 0.94556 1.51231 0.91030 1.19489 0.97371 0.91323 0.96514 1.21689 0.90622 1.01071 1.01877 1.21656 0.96637 0.81106 1.00821 1.44904 1.02277 1.08580 1.81581 1.17476 0.85269 0.90856 0.97150 1.20616 0.92558 0.97979 1.07935 1.20846 0.94701 0.96341 0.98916 1.20174 0.98593 0.91263 1.06074 1.19022 0.91125 0.94388 1.05586 1.17110 0.89505 0.85809 1.09182 1.42297 1.10105 1.03039 1.75428 1.15473 0.83548 0.82395 0.77553 1.91033 1.50505 1.47206 1.57942 1.45027 1.03831 1.09975 1.80055 1.20107 0.89517 0.84917 1.02741 0.92643 0.96362 0.96803 0.92099 0.92082 0.92269 0.92283 0.77110 0.85137 0.85552 0.85573 0.74358 0.73314 0.90597 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.20 4.04 -27.88 -0.11 -0.32 16 10 C -0.11 -2.06 5.27 -26.73 -0.14 -2.20 16 11 C 0.12 1.74 4.92 -4.04 -0.02 1.72 16 12 N -0.74 -9.51 5.73 -58.47 -0.34 -9.84 16 13 C 0.20 2.42 6.67 -83.54 -0.56 1.86 16 14 C -0.17 -1.83 9.31 -39.40 -0.37 -2.20 16 15 C -0.09 -0.79 10.05 -39.50 -0.40 -1.18 16 16 C -0.14 -1.15 9.79 -39.68 -0.39 -1.54 16 17 C -0.10 -0.94 5.90 -104.37 -0.62 -1.55 16 18 C 0.08 0.98 6.67 -83.57 -0.56 0.42 16 19 N -0.66 -8.08 5.27 -14.40 -0.08 -8.15 16 20 C 0.71 9.31 8.61 -87.89 -0.76 8.55 16 21 O -0.59 -9.80 17.91 5.28 0.09 -9.70 16 22 N -0.73 -6.76 5.78 -65.94 -0.38 -7.14 16 23 C 0.15 1.12 6.98 -4.56 -0.03 1.09 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.02 0.41 7.20 -51.92 -0.37 0.03 16 26 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.06 0.83 7.95 -51.93 -0.41 0.42 16 30 H 0.06 0.83 7.95 -51.93 -0.41 0.41 16 31 H 0.39 4.77 6.67 -40.82 -0.27 4.50 16 32 H 0.13 1.38 6.73 -52.48 -0.35 1.03 16 33 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 34 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.42 4.94 6.86 -40.82 -0.28 4.66 16 36 H 0.43 3.03 8.91 -40.82 -0.36 2.67 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 315.04 15.07 4.75 4.75 Total: -1.00 -33.31 315.04 -9.20 -42.52 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -4.98 Total: 6.32 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -4.37 Total: -8.47 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.02 Total: -51.92 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.31 -9.20 -42.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433751.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.234 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds