Wall clock time and date at job start Mon Mar 30 2020 01:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00303 * 2 1 4 4 H 1.48505 * 109.47177 * 270.00156 * 3 2 1 5 5 H 1.48503 * 109.47417 * 29.99586 * 3 2 1 6 6 H 1.48501 * 109.47677 * 150.00094 * 3 2 1 7 7 C 1.37878 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00022 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00361 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47457 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47085 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.46754 * 180.02562 * 11 10 9 13 13 C 1.39932 * 119.99864 * 180.02562 * 12 11 10 14 14 C 1.38742 * 120.14368 * 359.97438 * 13 12 11 15 15 C 1.38224 * 120.26051 * 179.97438 * 14 13 12 16 16 C 1.38478 * 120.09561 * 359.97438 * 15 14 13 17 17 C 1.37713 * 119.85460 * 0.02562 * 16 15 14 18 18 C 1.38868 * 120.67939 * 359.97438 * 17 16 15 19 19 N 1.39772 * 119.88919 * 180.02562 * 18 17 16 20 20 C 1.33934 * 122.91308 * 359.97438 * 19 18 17 21 21 O 1.21595 * 118.47773 * 180.02562 * 20 19 18 22 22 N 1.34526 * 123.03455 * 0.02562 * 20 19 18 23 23 C 1.47270 * 119.18942 * 0.02562 * 22 20 19 24 24 H 0.97000 * 119.99954 * 0.02562 * 1 2 3 25 25 H 1.09011 * 109.47194 * 59.99970 * 9 7 2 26 26 H 1.09003 * 109.47444 * 300.00458 * 9 7 2 27 27 H 1.08998 * 109.47216 * 60.00005 * 10 9 7 28 28 H 1.08999 * 109.47266 * 300.00135 * 10 9 7 29 29 H 1.08995 * 109.47478 * 60.00291 * 11 10 9 30 30 H 1.08995 * 109.47242 * 299.99627 * 11 10 9 31 31 H 0.97001 * 120.00233 * 359.97438 * 12 11 10 32 32 H 1.08003 * 119.86727 * 359.96159 * 14 13 12 33 33 H 1.08004 * 119.95528 * 180.02562 * 15 14 13 34 34 H 1.07994 * 120.06920 * 179.97438 * 16 15 14 35 35 H 0.96997 * 118.54463 * 180.27940 * 19 18 17 36 36 H 0.97002 * 120.40687 * 180.02562 * 22 20 19 37 37 H 1.08999 * 107.95795 * 121.88008 * 23 22 20 38 38 H 1.09000 * 107.95851 * 238.15556 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5515 -2.6366 0.0001 12 7 6.0397 -4.0179 -0.0004 13 6 7.4155 -4.2737 0.0001 14 6 8.3197 -3.2214 0.0005 15 6 9.6792 -3.4713 0.0016 16 6 10.1456 -4.7751 0.0027 17 6 9.2519 -5.8229 0.0023 18 6 7.8834 -5.5869 0.0013 19 7 6.9911 -6.6627 0.0014 20 6 7.3919 -7.9407 0.0020 21 8 6.5456 -8.8137 0.0016 22 7 8.6875 -8.3029 0.0030 23 6 9.7254 -7.2581 0.0041 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6797 0.8895 26 1 3.8745 -0.6809 -0.8905 27 1 3.6578 -3.1507 -0.8896 28 1 3.6585 -3.1503 0.8903 29 1 5.9148 -2.1228 0.8900 30 1 5.9148 -2.1230 -0.8899 31 1 5.4094 -4.7552 -0.0003 32 1 7.9599 -2.2031 -0.0001 33 1 10.3788 -2.6484 0.0023 34 1 11.2078 -4.9699 0.0031 35 1 6.0393 -6.4755 -0.0035 36 1 8.9350 -9.2408 0.0030 37 1 10.3500 -7.4058 0.8851 38 1 10.3511 -7.4051 -0.8763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168433751.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:04 Heat of formation + Delta-G solvation = -31.753645 kcal Electronic energy + Delta-G solvation = -20281.308150 eV Core-core repulsion = 17121.917097 eV Total energy + Delta-G solvation = -3159.391053 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.15857 -40.04797 -37.76608 -36.32175 -35.91686 -35.06045 -33.47030 -31.49398 -30.22078 -28.04151 -26.93299 -25.02137 -24.10512 -22.69148 -22.05152 -20.50550 -19.46986 -19.05211 -18.66890 -17.50392 -17.04600 -16.91915 -16.48881 -16.34601 -16.06352 -15.61308 -15.06023 -14.77785 -14.76060 -14.66905 -14.41886 -13.96980 -13.64658 -13.56061 -12.77624 -12.74275 -12.56106 -12.22763 -11.89802 -11.77764 -11.71091 -11.63126 -11.50219 -11.33826 -10.93662 -10.77171 -10.35606 -9.08314 -8.30070 -8.13293 -6.35464 0.33200 0.62790 1.37657 1.39881 1.51716 1.62185 1.94839 2.36726 2.42849 2.64217 2.91609 3.05681 3.50452 4.01299 4.08621 4.16651 4.21168 4.38700 4.50191 4.56357 4.56739 4.65970 4.77584 4.91414 4.93974 5.00479 5.07799 5.13295 5.43731 5.50635 5.55318 5.63841 5.67626 5.76948 5.90333 5.97516 6.23013 6.29121 6.53980 6.70729 6.73714 7.29537 7.30564 8.86992 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026506 B = 0.003454 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.096052 B = 8104.635509 C = 9129.791825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.239 1.239 7 C -0.537 4.537 8 H 0.027 0.973 9 C -0.007 4.007 10 C -0.106 4.106 11 C 0.138 3.862 12 N -0.751 5.751 13 C 0.179 3.821 14 C -0.181 4.181 15 C -0.086 4.086 16 C -0.128 4.128 17 C -0.102 4.102 18 C 0.060 3.940 19 N -0.663 5.663 20 C 0.702 3.298 21 O -0.636 6.636 22 N -0.717 5.717 23 C 0.145 3.855 24 H 0.266 0.734 25 H 0.027 0.973 26 H 0.025 0.975 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.393 0.607 32 H 0.132 0.868 33 H 0.154 0.846 34 H 0.163 0.837 35 H 0.414 0.586 36 H 0.436 0.564 37 H 0.104 0.896 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.844 -9.479 0.020 30.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.162 1.162 7 C -0.575 4.575 8 H 0.045 0.955 9 C -0.045 4.045 10 C -0.144 4.144 11 C 0.014 3.986 12 N -0.382 5.382 13 C 0.074 3.926 14 C -0.204 4.204 15 C -0.105 4.105 16 C -0.149 4.149 17 C -0.106 4.106 18 C -0.039 4.039 19 N -0.310 5.310 20 C 0.402 3.598 21 O -0.518 6.518 22 N -0.377 5.377 23 C 0.022 3.978 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.228 0.772 32 H 0.150 0.850 33 H 0.172 0.828 34 H 0.181 0.819 35 H 0.252 0.748 36 H 0.278 0.722 37 H 0.122 0.878 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 28.367 -9.585 0.027 29.942 hybrid contribution -1.553 0.102 -0.027 1.557 sum 26.813 -9.483 0.000 28.441 Atomic orbital electron populations 1.70085 1.08564 1.28262 1.52625 1.26119 0.95665 1.03930 0.93990 0.85575 0.79645 0.77621 0.79295 1.19063 1.21285 1.16203 1.21515 0.92389 0.93001 1.50611 0.95451 1.19430 0.93616 0.94285 0.97167 1.21481 0.93591 0.98198 1.01115 1.21318 0.93456 0.82303 1.01483 1.44720 1.02985 1.07708 1.82737 1.17664 0.84783 0.91602 0.98590 1.20832 0.93537 0.97702 1.08313 1.21234 0.94187 0.97719 0.97366 1.20611 1.00161 0.90402 1.03686 1.19458 0.90390 0.96185 1.04589 1.17378 0.90437 0.85337 1.10741 1.42273 1.10233 1.03168 1.75318 1.15736 0.84417 0.82146 0.77541 1.90990 1.52124 1.48442 1.60260 1.45029 1.02845 1.11193 1.78657 1.20385 0.88877 0.83121 1.05391 0.92506 0.95492 0.95627 0.92956 0.92978 0.91624 0.91566 0.77230 0.85041 0.82821 0.81924 0.74847 0.72182 0.87826 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 2 C 0.00 -0.04 5.47 84.66 0.46 0.43 16 3 Si 0.96 43.24 27.47 68.60 1.88 45.12 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.24 -9.72 6.54 99.48 0.65 -9.07 16 7 C -0.54 -30.78 9.66 25.60 0.25 -30.53 16 8 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 9 C -0.01 -0.31 4.04 29.85 0.12 -0.19 16 10 C -0.11 -3.83 5.27 30.59 0.16 -3.67 16 11 C 0.14 3.83 4.92 86.38 0.42 4.25 16 12 N -0.75 -19.04 5.73 -338.91 -1.94 -20.98 16 13 C 0.18 4.14 6.67 38.25 0.26 4.40 16 14 C -0.18 -3.53 9.31 22.39 0.21 -3.32 16 15 C -0.09 -1.19 10.05 22.32 0.22 -0.97 16 16 C -0.13 -1.53 9.79 22.20 0.22 -1.31 16 17 C -0.10 -1.66 5.90 -19.70 -0.12 -1.77 16 18 C 0.06 1.33 6.67 38.31 0.26 1.58 16 19 N -0.66 -16.33 5.27 -318.20 -1.68 -18.01 16 20 C 0.70 18.37 8.61 179.40 1.54 19.92 16 21 O -0.64 -21.88 17.91 -4.01 -0.07 -21.95 16 22 N -0.72 -12.05 5.78 -480.95 -2.78 -14.83 16 23 C 0.15 1.61 6.98 85.62 0.60 2.21 16 24 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 25 H 0.03 1.15 7.20 -2.38 -0.02 1.13 16 26 H 0.03 1.08 7.57 -2.39 -0.02 1.06 16 27 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 1.73 7.95 -2.39 -0.02 1.71 16 30 H 0.07 1.74 7.95 -2.39 -0.02 1.72 16 31 H 0.39 9.88 6.67 -92.71 -0.62 9.26 16 32 H 0.13 2.47 6.73 -2.91 -0.02 2.45 16 33 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.41 10.36 6.86 -92.71 -0.64 9.72 16 36 H 0.44 5.47 8.91 -92.71 -0.83 4.65 16 37 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -75.49 315.04 -0.71 -76.20 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -1.03 Total: 23.40 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 4.60 Total: -8.98 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -6.10 Total: -113.79 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.07 Total: -21.95 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.12 kcal Total: -75.49 -0.71 -76.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433751.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.444 kcal (2) G-P(sol) polarization free energy of solvation -75.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds