Wall clock time and date at job start Mon Mar 30 2020 01:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48505 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47080 * 299.99913 * 3 2 1 6 6 H 1.48502 * 109.47342 * 59.99996 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.38453 * 119.99874 * 180.27621 * 12 11 10 14 14 C 1.39623 * 119.45283 * 359.72479 * 13 12 11 15 15 C 1.36414 * 118.89841 * 179.97438 * 14 13 12 16 16 C 1.40326 * 118.78690 * 359.96772 * 15 14 13 17 17 C 1.39099 * 119.42066 * 0.03444 * 16 15 14 18 18 N 1.31931 * 119.98759 * 359.74386 * 17 16 15 19 19 C 1.47435 * 118.75471 * 180.02562 * 16 15 14 20 20 O 1.21592 * 120.47686 * 197.11476 * 19 16 15 21 21 N 1.34854 * 119.04783 * 17.09311 * 19 16 15 22 22 C 1.45988 * 121.38087 * 3.30846 * 21 19 16 23 23 C 1.50294 * 121.77353 * 179.97438 * 15 14 13 24 24 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 26 26 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 27 27 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 28 28 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 29 29 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 30 30 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 31 31 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 32 32 H 1.08004 * 120.54917 * 359.97438 * 14 13 12 33 33 H 1.07994 * 120.00334 * 179.97438 * 17 16 15 34 34 H 0.97006 * 119.30128 * 183.29107 * 21 19 16 35 35 H 1.09002 * 109.13550 * 82.62222 * 22 21 19 36 36 H 1.09001 * 109.13524 * 201.79858 * 22 21 19 37 37 H 1.09006 * 109.39847 * 266.68856 * 23 15 14 38 38 H 1.08987 * 109.39723 * 26.42455 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 7 2.4325 -6.1006 -0.0024 13 6 1.9711 -7.4059 -0.0087 14 6 0.5960 -7.6480 -0.0088 15 6 0.1538 -8.9384 -0.0156 16 6 1.0982 -9.9763 -0.0229 17 6 2.4542 -9.6663 -0.0223 18 7 2.8423 -8.4054 -0.0200 19 6 0.6195 -11.3708 -0.0308 20 8 1.3668 -12.2811 0.2713 21 7 -0.6593 -11.6221 -0.3774 22 6 -1.5534 -10.5529 -0.8116 23 6 -1.3115 -9.2729 -0.0155 24 1 -0.4851 0.8400 0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 2.8714 -3.6047 0.8890 28 1 2.8727 -3.6038 -0.8910 29 1 0.8541 -5.0447 -0.8923 30 1 0.8534 -5.0450 0.8877 31 1 3.3862 -5.9232 -0.0026 32 1 -0.1059 -6.8271 -0.0036 33 1 3.1891 -10.4576 -0.0275 34 1 -0.9918 -12.5325 -0.3376 35 1 -1.3833 -10.3523 -1.8694 36 1 -2.5863 -10.8712 -0.6701 37 1 -1.6499 -9.4173 1.0106 38 1 -1.8698 -8.4534 -0.4676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168435953.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:45 Heat of formation + Delta-G solvation = -17.899438 kcal Electronic energy + Delta-G solvation = -19988.651493 eV Core-core repulsion = 16829.861204 eV Total energy + Delta-G solvation = -3158.790290 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.06390 -39.14976 -36.75961 -36.20920 -33.72895 -33.09708 -31.70734 -29.96616 -29.43682 -26.74935 -24.90364 -24.01702 -22.66530 -22.16619 -20.41781 -19.73915 -17.88399 -17.42998 -16.71404 -16.57177 -16.22681 -15.38897 -15.10442 -14.91645 -14.53829 -14.26803 -14.16462 -13.95415 -13.91571 -13.33424 -12.83533 -12.39469 -12.13390 -12.07569 -11.93888 -11.84419 -11.01392 -10.85892 -10.62109 -10.32163 -10.22027 -9.87247 -9.68713 -9.60756 -9.47351 -9.32594 -9.21610 -8.45850 -7.76027 -6.10748 -4.13583 0.84957 1.23660 2.79076 3.02534 3.17067 3.25010 3.33106 3.37052 3.87152 4.21273 4.36519 4.38007 4.50233 4.67269 4.81340 4.89280 5.02652 5.08176 5.25834 5.38134 5.45019 5.51632 5.52617 5.71188 5.75466 5.90098 6.02971 6.31501 6.42446 6.52438 6.64485 6.83702 6.94032 7.01805 7.51793 7.56190 7.62856 7.87403 8.05420 8.10063 8.28896 8.92936 9.51457 11.00581 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.040494 B = 0.002821 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.293218 B = 9921.702327 C =10549.075472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.118 3.882 12 N -0.705 5.705 13 C 0.435 3.565 14 C -0.243 4.243 15 C 0.032 3.968 16 C -0.278 4.278 17 C 0.222 3.778 18 N -0.560 5.560 19 C 0.582 3.418 20 O -0.547 6.547 21 N -0.732 5.732 22 C 0.118 3.882 23 C -0.106 4.106 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.407 0.593 32 H 0.141 0.859 33 H 0.166 0.834 34 H 0.402 0.598 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.465 -19.739 -1.472 20.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.160 4.160 11 C -0.005 4.005 12 N -0.332 5.332 13 C 0.195 3.805 14 C -0.268 4.268 15 C 0.025 3.975 16 C -0.286 4.286 17 C 0.062 3.938 18 N -0.278 5.278 19 C 0.371 3.629 20 O -0.425 6.425 21 N -0.385 5.385 22 C -0.007 4.007 23 C -0.143 4.143 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.243 0.757 32 H 0.159 0.841 33 H 0.183 0.817 34 H 0.238 0.762 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.438 -19.446 -1.334 19.793 hybrid contribution -0.349 0.661 0.013 0.748 sum -3.787 -18.785 -1.321 19.208 Atomic orbital electron populations 1.69957 1.06066 1.26688 1.50642 1.25016 0.94872 0.99365 0.95147 0.86521 0.80116 0.83635 0.77653 1.19711 1.20950 1.20944 1.21231 0.93113 0.90864 1.50912 0.92538 1.19029 0.93768 0.90876 0.97574 1.21892 0.99904 0.92787 1.01378 1.21845 0.92005 0.85296 1.01387 1.45003 1.10555 1.01590 1.76028 1.18738 0.88954 0.86187 0.86576 1.20942 0.94917 0.97324 1.13578 1.19592 0.95196 0.92274 0.90474 1.20144 0.95458 0.93186 1.19862 1.22464 0.92918 0.92000 0.86422 1.67415 1.37608 0.99526 1.23267 1.17941 0.81220 0.88377 0.75377 1.90796 1.55226 1.47119 1.49390 1.45677 1.11656 1.11369 1.69781 1.21225 0.93999 0.86963 0.98526 1.20840 0.92414 0.98440 1.02609 0.92933 0.96260 0.96264 0.92433 0.92435 0.91695 0.91682 0.75695 0.84109 0.81739 0.76218 0.91482 0.89282 0.88930 0.88022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.10 9.11 -34.44 -0.31 -14.42 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.21 5.27 -26.73 -0.14 -2.35 16 11 C 0.12 1.75 4.87 -4.04 -0.02 1.73 16 12 N -0.70 -9.82 5.71 -60.39 -0.34 -10.17 16 13 C 0.43 6.13 7.64 -155.20 -1.19 4.94 16 14 C -0.24 -2.98 8.97 -39.72 -0.36 -3.33 16 15 C 0.03 0.36 5.66 -104.69 -0.59 -0.24 16 16 C -0.28 -3.49 5.79 -105.05 -0.61 -4.10 16 17 C 0.22 2.98 10.84 -17.19 -0.19 2.79 16 18 N -0.56 -8.15 10.38 -12.15 -0.13 -8.28 16 19 C 0.58 7.22 7.80 -12.48 -0.10 7.12 16 20 O -0.55 -8.50 17.49 5.29 0.09 -8.41 16 21 N -0.73 -6.18 5.57 -61.89 -0.34 -6.53 16 22 C 0.12 0.69 7.03 -4.49 -0.03 0.66 16 23 C -0.11 -0.75 6.06 -28.25 -0.17 -0.92 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.94 7.91 -51.92 -0.41 0.53 16 30 H 0.06 0.95 7.91 -51.93 -0.41 0.54 16 31 H 0.41 5.47 8.59 -40.82 -0.35 5.12 16 32 H 0.14 1.56 6.68 -52.48 -0.35 1.21 16 33 H 0.17 1.99 7.87 -52.49 -0.41 1.58 16 34 H 0.40 2.70 8.92 -40.82 -0.36 2.33 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.56 8.09 -51.94 -0.42 0.14 16 LS Contribution 321.76 15.07 4.85 4.85 Total: -1.00 -32.17 321.76 -9.32 -41.49 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.22 Total: 2.34 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -3.94 Total: -6.17 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.08 Total: -50.07 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.17 -9.32 -41.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168435953.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.592 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds