Wall clock time and date at job start Mon Mar 30 2020 01:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48505 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47080 * 299.99913 * 3 2 1 6 6 H 1.48502 * 109.47342 * 59.99996 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.38453 * 119.99874 * 180.27621 * 12 11 10 14 14 C 1.39623 * 119.45283 * 359.72479 * 13 12 11 15 15 C 1.36414 * 118.89841 * 179.97438 * 14 13 12 16 16 C 1.40326 * 118.78690 * 359.96772 * 15 14 13 17 17 C 1.39099 * 119.42066 * 0.03444 * 16 15 14 18 18 N 1.31931 * 119.98759 * 359.74386 * 17 16 15 19 19 C 1.47435 * 118.75471 * 180.02562 * 16 15 14 20 20 O 1.21592 * 120.47686 * 197.11476 * 19 16 15 21 21 N 1.34854 * 119.04783 * 17.09311 * 19 16 15 22 22 C 1.45988 * 121.38087 * 3.30846 * 21 19 16 23 23 C 1.50294 * 121.77353 * 179.97438 * 15 14 13 24 24 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 26 26 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 27 27 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 28 28 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 29 29 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 30 30 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 31 31 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 32 32 H 1.08004 * 120.54917 * 359.97438 * 14 13 12 33 33 H 1.07994 * 120.00334 * 179.97438 * 17 16 15 34 34 H 0.97006 * 119.30128 * 183.29107 * 21 19 16 35 35 H 1.09002 * 109.13550 * 82.62222 * 22 21 19 36 36 H 1.09001 * 109.13524 * 201.79858 * 22 21 19 37 37 H 1.09006 * 109.39847 * 266.68856 * 23 15 14 38 38 H 1.08987 * 109.39723 * 26.42455 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 7 2.4325 -6.1006 -0.0024 13 6 1.9711 -7.4059 -0.0087 14 6 0.5960 -7.6480 -0.0088 15 6 0.1538 -8.9384 -0.0156 16 6 1.0982 -9.9763 -0.0229 17 6 2.4542 -9.6663 -0.0223 18 7 2.8423 -8.4054 -0.0200 19 6 0.6195 -11.3708 -0.0308 20 8 1.3668 -12.2811 0.2713 21 7 -0.6593 -11.6221 -0.3774 22 6 -1.5534 -10.5529 -0.8116 23 6 -1.3115 -9.2729 -0.0155 24 1 -0.4851 0.8400 0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 2.8714 -3.6047 0.8890 28 1 2.8727 -3.6038 -0.8910 29 1 0.8541 -5.0447 -0.8923 30 1 0.8534 -5.0450 0.8877 31 1 3.3862 -5.9232 -0.0026 32 1 -0.1059 -6.8271 -0.0036 33 1 3.1891 -10.4576 -0.0275 34 1 -0.9918 -12.5325 -0.3376 35 1 -1.3833 -10.3523 -1.8694 36 1 -2.5863 -10.8712 -0.6701 37 1 -1.6499 -9.4173 1.0106 38 1 -1.8698 -8.4534 -0.4676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168435953.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:44 Heat of formation + Delta-G solvation = -40.021699 kcal Electronic energy + Delta-G solvation = -19989.610787 eV Core-core repulsion = 16829.861204 eV Total energy + Delta-G solvation = -3159.749583 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.98503 -40.11680 -37.80061 -37.21904 -35.47826 -34.00191 -33.34463 -30.98616 -30.36536 -28.33382 -25.91134 -25.19265 -23.91643 -23.20722 -21.91561 -20.59457 -18.84073 -18.52045 -18.27420 -17.54283 -17.29396 -16.55207 -16.46521 -16.18134 -15.80040 -15.33430 -15.16068 -15.03836 -14.73186 -14.37663 -14.05874 -13.77436 -13.69094 -13.34690 -12.91663 -12.81518 -12.53551 -12.49114 -12.34801 -11.79869 -11.48520 -11.26988 -11.18329 -11.09258 -10.63370 -10.54700 -10.46827 -10.04482 -8.81021 -8.20386 -6.29988 -0.13659 0.29244 1.40406 1.42052 1.53804 1.82825 2.04874 2.33560 2.42087 2.88445 3.14050 3.45608 3.62577 3.67509 3.84755 4.01414 4.12007 4.17829 4.21963 4.31523 4.53096 4.58470 4.76765 4.86441 4.87740 4.91824 4.95091 5.05565 5.16180 5.18385 5.45715 5.52712 5.73349 5.85219 5.90059 5.95102 6.16955 6.25063 6.48835 6.86858 7.06299 7.21279 7.39284 8.91335 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.040494 B = 0.002821 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.293218 B = 9921.702327 C =10549.075472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.959 3.041 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.028 3.972 10 C -0.107 4.107 11 C 0.134 3.866 12 N -0.707 5.707 13 C 0.418 3.582 14 C -0.248 4.248 15 C 0.038 3.962 16 C -0.284 4.284 17 C 0.207 3.793 18 N -0.579 5.579 19 C 0.577 3.423 20 O -0.588 6.588 21 N -0.717 5.717 22 C 0.113 3.887 23 C -0.106 4.106 24 H 0.264 0.736 25 H 0.001 0.999 26 H 0.000 1.000 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.408 0.592 32 H 0.155 0.845 33 H 0.168 0.832 34 H 0.412 0.588 35 H 0.073 0.927 36 H 0.129 0.871 37 H 0.104 0.896 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.601 -20.030 -1.744 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.145 4.145 11 C 0.011 3.989 12 N -0.335 5.335 13 C 0.180 3.820 14 C -0.272 4.272 15 C 0.030 3.970 16 C -0.293 4.293 17 C 0.048 3.952 18 N -0.298 5.298 19 C 0.366 3.634 20 O -0.470 6.470 21 N -0.369 5.369 22 C -0.010 4.010 23 C -0.143 4.143 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.244 0.756 32 H 0.172 0.828 33 H 0.185 0.815 34 H 0.250 0.750 35 H 0.091 0.909 36 H 0.147 0.853 37 H 0.122 0.878 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.605 -19.761 -1.620 20.355 hybrid contribution -0.050 0.691 0.085 0.698 sum -4.656 -19.070 -1.535 19.690 Atomic orbital electron populations 1.70066 1.07549 1.27691 1.51685 1.25884 0.95742 1.03067 0.94863 0.85481 0.79088 0.79245 0.77732 1.18862 1.20470 1.20499 1.21710 0.93545 0.92456 1.50411 0.92367 1.18910 0.94236 0.92145 0.95693 1.21601 0.98734 0.92648 1.01514 1.21524 0.91527 0.83922 1.01948 1.44798 1.10343 1.01444 1.76888 1.18939 0.89842 0.85901 0.87331 1.21141 0.94293 0.98339 1.13460 1.20024 0.97236 0.91263 0.88486 1.20322 0.95508 0.94020 1.19445 1.22603 0.93857 0.91787 0.86986 1.67348 1.38389 1.00009 1.24048 1.17996 0.82259 0.87770 0.75406 1.90773 1.56694 1.47971 1.51588 1.45665 1.10509 1.12830 1.67927 1.21525 0.95329 0.85688 0.98470 1.21015 0.89619 0.99868 1.03795 0.92750 0.98049 0.98136 0.92333 0.92247 0.91081 0.91233 0.75640 0.82776 0.81497 0.75038 0.90903 0.85264 0.87826 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.09 13.29 21.45 0.28 -53.80 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.96 42.86 29.54 68.60 2.03 44.88 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.54 -29.36 9.11 25.60 0.23 -29.13 16 8 H 0.06 3.05 7.74 -2.91 -0.02 3.02 16 9 C 0.03 1.34 4.97 29.85 0.15 1.48 16 10 C -0.11 -3.85 5.27 30.59 0.16 -3.69 16 11 C 0.13 3.86 4.87 86.38 0.42 4.28 16 12 N -0.71 -19.26 5.71 -344.96 -1.97 -21.23 16 13 C 0.42 11.55 7.64 133.31 1.02 12.57 16 14 C -0.25 -5.69 8.97 22.18 0.20 -5.49 16 15 C 0.04 0.76 5.66 -19.91 -0.11 0.65 16 16 C -0.28 -6.94 5.79 -20.14 -0.12 -7.06 16 17 C 0.21 5.63 10.84 84.88 0.92 6.55 16 18 N -0.58 -16.96 10.38 -192.36 -2.00 -18.96 16 19 C 0.58 13.80 7.80 86.65 0.68 14.48 16 20 O -0.59 -18.40 17.49 -4.00 -0.07 -18.47 16 21 N -0.72 -10.39 5.57 -467.94 -2.61 -13.00 16 22 C 0.11 0.90 7.03 86.36 0.61 1.51 16 23 C -0.11 -1.13 6.06 29.61 0.18 -0.95 16 24 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 25 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.07 1.97 7.91 -2.38 -0.02 1.95 16 30 H 0.07 1.95 7.91 -2.39 -0.02 1.93 16 31 H 0.41 10.83 8.59 -92.71 -0.80 10.04 16 32 H 0.15 3.07 6.68 -2.91 -0.02 3.05 16 33 H 0.17 4.24 7.87 -2.91 -0.02 4.22 16 34 H 0.41 4.52 8.92 -92.70 -0.83 3.69 16 35 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.13 0.83 8.09 -2.39 -0.02 0.81 16 Total: -1.00 -70.22 321.76 -0.07 -70.29 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -0.53 Total: 14.50 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 4.80 Total: -4.21 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -6.29 Total: -106.99 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.07 Total: -18.47 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -70.22 -0.07 -70.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168435953.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.265 kcal (2) G-P(sol) polarization free energy of solvation -70.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds