Wall clock time and date at job start Mon Mar 30 2020 01:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42100 * 108.57996 * 2 1 4 4 O 1.42100 * 108.57483 * 228.97692 * 2 1 3 5 5 C 1.81399 * 101.92209 * 114.49179 * 2 1 3 6 6 C 1.52998 * 109.46891 * 304.99736 * 5 2 1 7 7 C 1.53006 * 109.46907 * 179.97438 * 6 5 2 8 8 C 1.53000 * 109.46839 * 60.00324 * 7 6 5 9 9 N 1.46896 * 109.47011 * 179.97438 * 8 7 6 10 10 C 1.46902 * 110.99991 * 274.99927 * 9 8 7 11 11 C 1.52997 * 109.47295 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47240 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00100 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00198 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99759 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00198 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47235 * 60.00155 * 16 14 12 18 18 H 1.48496 * 109.47248 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47096 * 300.00016 * 16 14 12 20 20 C 1.53001 * 109.46935 * 299.99881 * 8 7 6 21 21 C 1.52995 * 109.47098 * 184.99597 * 5 2 1 22 22 H 1.08998 * 109.46716 * 305.51407 * 1 2 3 23 23 H 1.09006 * 109.46801 * 65.50576 * 1 2 3 24 24 H 1.08993 * 109.47055 * 185.50649 * 1 2 3 25 25 H 1.09002 * 109.46890 * 64.99434 * 5 2 1 26 26 H 1.08993 * 109.47460 * 300.00012 * 6 5 2 27 27 H 1.09003 * 109.47053 * 60.00201 * 6 5 2 28 28 H 1.09002 * 109.47078 * 299.99823 * 7 6 5 29 29 H 1.09003 * 109.46758 * 180.02562 * 7 6 5 30 30 H 1.08993 * 109.47154 * 59.99977 * 8 7 6 31 31 H 1.00896 * 111.00323 * 151.04632 * 9 8 7 32 32 H 1.08992 * 109.47175 * 299.99989 * 10 9 8 33 33 H 1.09004 * 109.47099 * 60.00283 * 10 9 8 34 34 H 1.09008 * 109.47250 * 299.99825 * 11 10 9 35 35 H 1.08997 * 109.47500 * 59.99594 * 11 10 9 36 36 H 0.96998 * 120.00096 * 180.02562 * 15 14 12 37 37 H 1.09006 * 109.47129 * 299.99730 * 20 8 7 38 38 H 1.09003 * 109.46881 * 180.02562 * 20 8 7 39 39 H 1.08990 * 109.47602 * 300.00105 * 21 5 2 40 40 H 1.09002 * 109.46925 * 60.00412 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7358 1.6152 6 6 1.4847 0.0619 2.7146 7 6 1.8002 -0.5592 4.0769 8 6 3.3116 -0.5290 4.3133 9 7 3.6145 -1.1247 5.6214 10 6 3.4904 -0.1292 6.6946 11 6 3.8134 -0.7852 8.0386 12 6 3.6866 0.2362 9.1394 13 1 3.4036 1.2515 8.9040 14 6 3.9310 -0.1258 10.4472 15 7 4.2752 -1.3623 10.7338 16 14 3.7732 1.1400 11.8118 17 1 2.3856 1.6682 11.8391 18 1 4.0868 0.5034 13.1162 19 1 4.7225 2.2550 11.5648 20 6 4.0157 -1.3266 3.2137 21 6 3.7001 -0.7053 1.8512 22 1 -0.3633 0.5970 0.8365 23 1 -0.3633 0.4261 -0.9352 24 1 -0.3633 -1.0229 0.0986 25 1 1.8388 -1.7679 1.6342 26 1 1.8345 1.0939 2.6956 27 1 0.4079 0.0400 2.5464 28 1 1.4499 -1.5912 4.0957 29 1 1.2982 0.0089 4.8602 30 1 3.6617 0.5029 4.2945 31 1 4.5313 -1.5460 5.6234 32 1 4.1871 0.6891 6.5134 33 1 2.4718 0.2585 6.7146 34 1 3.1168 -1.6038 8.2201 35 1 4.8319 -1.1726 8.0184 36 1 4.4467 -1.6171 11.6539 37 1 3.6655 -2.3587 3.2326 38 1 5.0924 -1.3055 3.3824 39 1 4.2018 -1.2734 1.0680 40 1 4.0500 0.3269 1.8322 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169861860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:54 Heat of formation + Delta-G solvation = -94.894558 kcal Electronic energy + Delta-G solvation = -19553.600731 eV Core-core repulsion = 16494.622883 eV Total energy + Delta-G solvation = -3058.977849 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.99421 -37.24674 -36.29389 -35.30288 -32.96027 -31.37246 -30.50722 -29.66930 -27.74882 -24.22665 -23.02508 -22.09952 -20.48648 -19.92997 -19.07049 -17.22722 -16.41186 -16.35344 -16.18995 -15.47467 -14.93789 -14.52999 -14.40431 -14.16013 -13.95082 -13.57877 -13.28773 -13.02916 -12.60438 -12.48031 -12.35986 -12.26928 -12.23299 -11.86139 -11.70835 -11.35274 -11.28020 -11.16031 -10.96586 -10.75032 -10.57165 -10.28643 -10.22388 -9.93742 -9.36316 -9.16501 -8.36876 -7.86202 -6.01390 -4.04185 -0.31034 2.41664 3.31609 3.32163 3.36641 3.38884 3.67364 4.14520 4.18264 4.36447 4.43345 4.51521 4.62079 4.85652 4.95538 5.06038 5.14169 5.20257 5.29739 5.32520 5.34532 5.53890 5.64452 5.69744 5.74155 6.01014 6.03774 6.21355 6.28686 6.32421 6.47289 6.96675 7.46823 7.70928 7.80351 7.93751 8.06465 8.41738 9.03001 9.59694 11.09996 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.044887 B = 0.003018 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.644446 B = 9276.881502 C = 9522.489265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.415 3.585 3 O -0.938 6.938 4 O -0.945 6.945 5 C -0.562 4.562 6 C -0.111 4.111 7 C -0.099 4.099 8 C 0.083 3.917 9 N -0.689 5.689 10 C 0.066 3.934 11 C 0.026 3.974 12 C -0.523 4.523 13 H 0.053 0.947 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.112 4.112 21 C -0.102 4.102 22 H 0.132 0.868 23 H 0.127 0.873 24 H 0.129 0.871 25 H 0.139 0.861 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.337 0.663 32 H 0.015 0.985 33 H 0.058 0.942 34 H 0.025 0.975 35 H 0.013 0.987 36 H 0.261 0.739 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.018 0.648 -21.420 22.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.599 3.401 3 O -0.936 6.936 4 O -0.942 6.942 5 C -0.672 4.672 6 C -0.150 4.150 7 C -0.138 4.138 8 C -0.028 4.028 9 N -0.320 5.320 10 C -0.062 4.062 11 C -0.012 4.012 12 C -0.562 4.562 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.151 4.151 21 C -0.141 4.141 22 H 0.150 0.850 23 H 0.146 0.854 24 H 0.147 0.853 25 H 0.157 0.843 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.155 0.845 32 H 0.033 0.967 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.039 0.591 -21.866 22.979 hybrid contribution 0.082 0.830 1.299 1.544 sum -6.958 1.421 -20.567 21.758 Atomic orbital electron populations 1.30296 1.26997 1.11678 1.11757 1.08085 0.78367 0.75956 0.77692 1.93589 1.78928 1.34471 1.86566 1.93587 1.79163 1.67119 1.54331 1.30171 1.05854 1.12394 1.18763 1.21540 0.99258 0.99529 0.94644 1.21443 0.96307 1.01708 0.94389 1.21513 0.95189 0.96539 0.89510 1.60594 1.35067 1.34163 1.02141 1.22202 0.99486 0.92298 0.92236 1.19059 0.96951 0.96228 0.88941 1.21143 1.46904 0.96315 0.91833 0.92832 1.25003 0.95249 0.95280 0.98809 1.69959 1.46978 1.17089 1.19243 0.86644 0.78585 0.81518 0.81160 1.20216 1.21265 1.20277 1.21650 1.00435 1.00341 0.92669 1.21330 0.89993 1.03158 0.99636 0.84991 0.85431 0.85277 0.84304 0.89918 0.90573 0.90925 0.91009 0.94047 0.84462 0.96666 0.92372 0.95709 0.96865 0.92917 0.90630 0.91269 0.90328 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.95 10.01 101.05 1.01 -1.94 16 2 S 2.42 19.25 4.90 -107.50 -0.53 18.73 16 3 O -0.94 -10.92 18.06 -57.83 -1.04 -11.96 16 4 O -0.94 -10.81 18.10 -57.83 -1.05 -11.85 16 5 C -0.56 -4.25 2.62 -26.73 -0.07 -4.32 16 6 C -0.11 -0.91 4.91 -26.73 -0.13 -1.04 16 7 C -0.10 -1.14 5.43 -26.73 -0.15 -1.28 16 8 C 0.08 1.09 2.49 -67.71 -0.17 0.92 16 9 N -0.69 -11.59 6.31 -106.73 -0.67 -12.26 16 10 C 0.07 1.35 5.42 -3.82 -0.02 1.33 16 11 C 0.03 0.66 5.23 -27.89 -0.15 0.51 16 12 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 16 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.11 -1.20 5.20 -26.71 -0.14 -1.34 16 21 C -0.10 -0.94 5.20 -26.71 -0.14 -1.08 16 22 H 0.13 0.42 6.77 -51.92 -0.35 0.07 16 23 H 0.13 0.49 8.14 -51.92 -0.42 0.07 16 24 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.14 0.77 8.14 -51.92 -0.42 0.35 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.40 6.39 -51.93 -0.33 0.07 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.91 7.45 -51.93 -0.39 0.53 16 30 H 0.04 0.58 7.80 -51.93 -0.40 0.18 16 31 H 0.34 5.51 8.35 -39.29 -0.33 5.18 16 32 H 0.02 0.31 8.05 -51.93 -0.42 -0.11 16 33 H 0.06 1.19 7.44 -51.93 -0.39 0.80 16 34 H 0.02 0.69 8.14 -51.92 -0.42 0.26 16 35 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 330.44 15.07 4.98 4.98 Total: -1.00 -35.41 330.44 -9.75 -45.16 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -6.80 Total: -1.49 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -0.36 Total: -21.74 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.06 Total: -38.37 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -2.09 Total: -23.82 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 19.25 SS G_CDS: -0.53 Total: 18.73 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.41 -9.75 -45.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169861860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.735 kcal (2) G-P(sol) polarization free energy of solvation -35.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds