Wall clock time and date at job start Mon Mar 30 2020 01:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42100 * 108.57996 * 2 1 4 4 O 1.42100 * 108.57483 * 228.97692 * 2 1 3 5 5 C 1.81399 * 101.92209 * 114.49179 * 2 1 3 6 6 C 1.52998 * 109.46891 * 304.99736 * 5 2 1 7 7 C 1.53006 * 109.46907 * 179.97438 * 6 5 2 8 8 C 1.53000 * 109.46839 * 60.00324 * 7 6 5 9 9 N 1.46896 * 109.47011 * 179.97438 * 8 7 6 10 10 C 1.46902 * 110.99991 * 274.99927 * 9 8 7 11 11 C 1.52997 * 109.47295 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47240 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00100 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00198 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99759 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00198 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47235 * 60.00155 * 16 14 12 18 18 H 1.48496 * 109.47248 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47096 * 300.00016 * 16 14 12 20 20 C 1.53001 * 109.46935 * 299.99881 * 8 7 6 21 21 C 1.52995 * 109.47098 * 184.99597 * 5 2 1 22 22 H 1.08998 * 109.46716 * 305.51407 * 1 2 3 23 23 H 1.09006 * 109.46801 * 65.50576 * 1 2 3 24 24 H 1.08993 * 109.47055 * 185.50649 * 1 2 3 25 25 H 1.09002 * 109.46890 * 64.99434 * 5 2 1 26 26 H 1.08993 * 109.47460 * 300.00012 * 6 5 2 27 27 H 1.09003 * 109.47053 * 60.00201 * 6 5 2 28 28 H 1.09002 * 109.47078 * 299.99823 * 7 6 5 29 29 H 1.09003 * 109.46758 * 180.02562 * 7 6 5 30 30 H 1.08993 * 109.47154 * 59.99977 * 8 7 6 31 31 H 1.00896 * 111.00323 * 151.04632 * 9 8 7 32 32 H 1.08992 * 109.47175 * 299.99989 * 10 9 8 33 33 H 1.09004 * 109.47099 * 60.00283 * 10 9 8 34 34 H 1.09008 * 109.47250 * 299.99825 * 11 10 9 35 35 H 1.08997 * 109.47500 * 59.99594 * 11 10 9 36 36 H 0.96998 * 120.00096 * 180.02562 * 15 14 12 37 37 H 1.09006 * 109.47129 * 299.99730 * 20 8 7 38 38 H 1.09003 * 109.46881 * 180.02562 * 20 8 7 39 39 H 1.08990 * 109.47602 * 300.00105 * 21 5 2 40 40 H 1.09002 * 109.46925 * 60.00412 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7358 1.6152 6 6 1.4847 0.0619 2.7146 7 6 1.8002 -0.5592 4.0769 8 6 3.3116 -0.5290 4.3133 9 7 3.6145 -1.1247 5.6214 10 6 3.4904 -0.1292 6.6946 11 6 3.8134 -0.7852 8.0386 12 6 3.6866 0.2362 9.1394 13 1 3.4036 1.2515 8.9040 14 6 3.9310 -0.1258 10.4472 15 7 4.2752 -1.3623 10.7338 16 14 3.7732 1.1400 11.8118 17 1 2.3856 1.6682 11.8391 18 1 4.0868 0.5034 13.1162 19 1 4.7225 2.2550 11.5648 20 6 4.0157 -1.3266 3.2137 21 6 3.7001 -0.7053 1.8512 22 1 -0.3633 0.5970 0.8365 23 1 -0.3633 0.4261 -0.9352 24 1 -0.3633 -1.0229 0.0986 25 1 1.8388 -1.7679 1.6342 26 1 1.8345 1.0939 2.6956 27 1 0.4079 0.0400 2.5464 28 1 1.4499 -1.5912 4.0957 29 1 1.2982 0.0089 4.8602 30 1 3.6617 0.5029 4.2945 31 1 4.5313 -1.5460 5.6234 32 1 4.1871 0.6891 6.5134 33 1 2.4718 0.2585 6.7146 34 1 3.1168 -1.6038 8.2201 35 1 4.8319 -1.1726 8.0184 36 1 4.4467 -1.6171 11.6539 37 1 3.6655 -2.3587 3.2326 38 1 5.0924 -1.3055 3.3824 39 1 4.2018 -1.2734 1.0680 40 1 4.0500 0.3269 1.8322 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169861860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:53 Heat of formation + Delta-G solvation = -122.026455 kcal Electronic energy + Delta-G solvation = -19554.777258 eV Core-core repulsion = 16494.622883 eV Total energy + Delta-G solvation = -3060.154376 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.91930 -37.98661 -37.03300 -36.72211 -34.89038 -32.28406 -31.85727 -30.19115 -29.19201 -26.04314 -23.88889 -23.16354 -22.18050 -20.86569 -19.70685 -18.51725 -17.88400 -17.07192 -16.88467 -16.76690 -16.38048 -15.90300 -15.60572 -15.14280 -14.70298 -14.59413 -14.27287 -13.91151 -13.83643 -13.55910 -13.22194 -13.15485 -13.06953 -13.01392 -12.95331 -12.86838 -12.56745 -12.41606 -12.11769 -12.00972 -11.90185 -11.50547 -11.37547 -11.33712 -11.11948 -10.82119 -10.56302 -9.27423 -8.20855 -6.32525 -0.89411 1.40180 1.43269 1.51285 1.87406 2.40191 2.73744 3.09089 3.12511 3.27943 3.47482 3.58598 4.03630 4.10721 4.15744 4.21952 4.27298 4.32403 4.42782 4.49794 4.56344 4.61740 4.72341 4.82300 4.90430 4.96050 5.05369 5.08216 5.17027 5.19222 5.28732 5.42719 5.47938 5.68030 5.79455 6.15569 6.31126 6.57010 6.84914 7.36873 8.91062 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.044887 B = 0.003018 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.644446 B = 9276.881502 C = 9522.489265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.640 4.640 2 S 2.420 3.580 3 O -0.983 6.983 4 O -0.986 6.986 5 C -0.557 4.557 6 C -0.111 4.111 7 C -0.099 4.099 8 C 0.077 3.923 9 N -0.692 5.692 10 C 0.085 3.915 11 C 0.033 3.967 12 C -0.547 4.547 13 H 0.059 0.941 14 C 0.001 3.999 15 N -0.932 5.932 16 Si 0.967 3.033 17 H -0.265 1.265 18 H -0.282 1.282 19 H -0.267 1.267 20 C -0.107 4.107 21 C -0.109 4.109 22 H 0.153 0.847 23 H 0.139 0.861 24 H 0.156 0.844 25 H 0.166 0.834 26 H 0.077 0.923 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.032 0.968 31 H 0.338 0.662 32 H 0.013 0.987 33 H 0.059 0.941 34 H -0.005 1.005 35 H -0.011 1.011 36 H 0.264 0.736 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.869 1.241 -22.138 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.609 3.391 3 O -0.981 6.981 4 O -0.983 6.983 5 C -0.667 4.667 6 C -0.149 4.149 7 C -0.139 4.139 8 C -0.032 4.032 9 N -0.323 5.323 10 C -0.044 4.044 11 C -0.005 4.005 12 C -0.585 4.585 13 H 0.078 0.922 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.791 3.209 17 H -0.190 1.190 18 H -0.208 1.208 19 H -0.192 1.192 20 C -0.145 4.145 21 C -0.147 4.147 22 H 0.171 0.829 23 H 0.157 0.843 24 H 0.174 0.826 25 H 0.183 0.817 26 H 0.096 0.904 27 H 0.133 0.867 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.156 0.844 32 H 0.031 0.969 33 H 0.078 0.922 34 H 0.014 0.986 35 H 0.008 0.992 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.853 1.193 -22.613 24.314 hybrid contribution 0.623 0.593 1.507 1.735 sum -8.230 1.786 -21.107 22.725 Atomic orbital electron populations 1.30135 1.21587 1.14159 1.13433 1.07638 0.80239 0.74320 0.76948 1.93533 1.81090 1.36427 1.87023 1.93537 1.81260 1.67679 1.55809 1.30126 1.04545 1.13921 1.18105 1.21591 1.01801 0.98923 0.92623 1.21428 0.94392 1.02023 0.96014 1.21694 0.97128 0.96202 0.88214 1.60557 1.35214 1.33354 1.03164 1.21794 0.99267 0.92349 0.90942 1.18910 0.94658 0.95236 0.91688 1.21598 1.46964 0.97036 0.92948 0.92231 1.25977 0.94616 0.97460 1.01663 1.70097 1.47810 1.19251 1.19992 0.85481 0.79151 0.78752 0.77536 1.19028 1.20781 1.19235 1.21585 1.00121 1.00260 0.92574 1.21363 0.91750 1.02793 0.98840 0.82918 0.84286 0.82552 0.81673 0.90445 0.86704 0.90588 0.92530 0.94985 0.84414 0.96893 0.92236 0.98636 0.99246 0.92712 0.90048 0.91421 0.89327 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -3.01 10.01 113.37 1.14 -1.88 16 2 S 2.42 34.16 4.90 -56.49 -0.28 33.89 16 3 O -0.98 -22.28 18.06 -127.37 -2.30 -24.58 16 4 O -0.99 -21.50 18.10 -127.37 -2.30 -23.80 16 5 C -0.56 -7.09 2.62 30.59 0.08 -7.01 16 6 C -0.11 -1.52 4.91 30.60 0.15 -1.37 16 7 C -0.10 -2.13 5.43 30.60 0.17 -1.96 16 8 C 0.08 2.00 2.49 44.92 0.11 2.12 16 9 N -0.69 -23.55 6.31 -491.59 -3.10 -26.65 16 10 C 0.09 3.57 5.42 86.30 0.47 4.04 16 11 C 0.03 1.74 5.23 29.85 0.16 1.89 16 12 C -0.55 -31.34 9.11 25.60 0.23 -31.10 16 13 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 14 C 0.00 0.05 5.46 84.66 0.46 0.51 16 15 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 16 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 C -0.11 -2.19 5.20 30.61 0.16 -2.03 16 21 C -0.11 -1.88 5.20 30.61 0.16 -1.72 16 22 H 0.15 0.19 6.77 -2.39 -0.02 0.17 16 23 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.16 0.00 8.14 -2.39 -0.02 -0.02 16 25 H 0.17 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.11 0.69 6.39 -2.39 -0.02 0.67 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 1.38 7.45 -2.39 -0.02 1.36 16 30 H 0.03 0.90 7.80 -2.39 -0.02 0.88 16 31 H 0.34 11.30 8.35 -89.70 -0.75 10.55 16 32 H 0.01 0.54 8.05 -2.39 -0.02 0.52 16 33 H 0.06 2.46 7.44 -2.38 -0.02 2.44 16 34 H 0.00 -0.28 8.14 -2.38 -0.02 -0.30 16 35 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 36 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.08 1.58 8.14 -2.38 -0.02 1.57 16 38 H 0.07 1.39 8.12 -2.39 -0.02 1.37 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -78.51 330.44 -2.13 -80.64 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.26 Total: 9.50 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 3.28 Total: -38.52 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -2.82 Total: -83.33 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -4.61 Total: -48.38 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 34.16 SS G_CDS: -0.28 Total: 33.89 kcal Total: -78.51 -2.13 -80.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169861860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.388 kcal (2) G-P(sol) polarization free energy of solvation -78.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds