Wall clock time and date at job start Mon Mar 30 2020 01:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42105 * 108.57706 * 2 1 4 4 O 1.42101 * 108.57944 * 228.97381 * 2 1 3 5 5 C 1.81397 * 101.92643 * 114.48432 * 2 1 3 6 6 C 1.52996 * 109.47494 * 179.97438 * 5 2 1 7 7 N 1.46896 * 109.47200 * 180.02562 * 6 5 2 8 8 C 1.46903 * 111.00418 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47667 * 205.00504 * 8 7 6 10 10 C 1.52997 * 109.47232 * 180.02562 * 9 8 7 11 11 C 1.52992 * 109.47296 * 59.99748 * 10 9 8 12 12 C 1.50700 * 109.47257 * 59.99902 * 11 10 9 13 13 H 1.07999 * 119.99988 * 359.97438 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47088 * 89.99795 * 16 14 12 18 18 H 1.48495 * 109.47293 * 209.99997 * 16 14 12 19 19 H 1.48507 * 109.47015 * 329.99955 * 16 14 12 20 20 C 1.53003 * 109.47195 * 299.99941 * 11 10 9 21 21 C 1.52994 * 109.46903 * 84.99606 * 8 7 6 22 22 H 1.09005 * 109.46812 * 305.51382 * 1 2 3 23 23 H 1.09001 * 109.47141 * 65.51417 * 1 2 3 24 24 H 1.09001 * 109.46742 * 185.51797 * 1 2 3 25 25 H 1.09009 * 109.46826 * 59.99857 * 5 2 1 26 26 H 1.09002 * 109.46977 * 300.00558 * 5 2 1 27 27 H 1.08995 * 109.46990 * 60.00198 * 6 5 2 28 28 H 1.09002 * 109.47484 * 300.00272 * 6 5 2 29 29 H 1.00896 * 111.00418 * 303.95553 * 7 6 5 30 30 H 1.09005 * 109.46638 * 325.00521 * 8 7 6 31 31 H 1.08998 * 109.46987 * 59.99359 * 9 8 7 32 32 H 1.09005 * 109.46648 * 300.00005 * 9 8 7 33 33 H 1.08996 * 109.46678 * 299.99615 * 10 9 8 34 34 H 1.09004 * 109.46869 * 179.97438 * 10 9 8 35 35 H 1.08997 * 109.47279 * 180.02562 * 11 10 9 36 36 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.47453 * 180.02562 * 20 11 10 38 38 H 1.08996 * 109.47248 * 300.00419 * 20 11 10 39 39 H 1.08999 * 109.47824 * 300.01002 * 21 8 7 40 40 H 1.09005 * 109.46726 * 60.00969 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1889 -0.7356 1.6152 6 6 3.7056 -0.8194 1.7979 7 7 4.0091 -1.4157 3.1056 8 6 5.4597 -1.5129 3.3161 9 6 5.7566 -2.6366 4.3111 10 6 7.2674 -2.7374 4.5307 11 6 7.7914 -1.4120 5.0870 12 6 7.1119 -1.1140 6.3987 13 1 6.3792 -1.8010 6.7956 14 6 7.4248 0.0364 7.0915 15 7 8.3203 0.8708 6.6103 16 14 6.5831 0.4054 8.7177 17 1 7.3737 -0.1823 9.8289 18 1 6.4863 1.8756 8.9026 19 1 5.2199 -0.1838 8.7144 20 6 7.4945 -0.2882 4.0920 21 6 5.9842 -0.1876 3.8720 22 1 -0.3633 0.5970 0.8365 23 1 -0.3633 0.4259 -0.9352 24 1 -0.3633 -1.0229 0.0988 25 1 1.7611 -1.7369 1.6665 26 1 1.7611 -0.1170 2.4042 27 1 4.1336 0.1816 1.7464 28 1 4.1329 -1.4383 1.0088 29 1 3.5693 -0.8965 3.8506 30 1 5.9508 -1.7286 2.3672 31 1 5.3828 -3.5808 3.9149 32 1 5.2654 -2.4208 5.2600 33 1 7.7588 -2.9529 3.5820 34 1 7.4788 -3.5377 5.2399 35 1 8.8677 -1.4836 5.2430 36 1 8.5401 1.6802 7.0976 37 1 7.8682 0.6560 4.4880 38 1 7.9859 -0.5038 3.1432 39 1 5.7727 0.6130 3.1632 40 1 5.4931 0.0282 4.8209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:45 Heat of formation + Delta-G solvation = -88.380509 kcal Electronic energy + Delta-G solvation = -19960.088849 eV Core-core repulsion = 16901.393470 eV Total energy + Delta-G solvation = -3058.695378 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.33981 -37.16829 -36.23207 -35.42768 -32.48666 -30.81507 -29.88034 -29.50711 -27.32198 -24.65201 -22.66325 -21.42403 -20.71588 -19.05893 -18.72318 -16.90971 -16.48735 -16.29914 -15.83411 -15.17102 -14.78012 -14.49239 -14.33029 -13.59162 -13.54331 -13.44444 -13.19490 -12.66227 -12.55326 -12.26792 -12.17801 -12.04329 -11.59149 -11.38202 -11.35095 -11.27358 -11.00327 -10.88932 -10.68440 -10.55997 -10.32252 -10.07604 -9.66907 -9.16977 -9.00271 -8.68333 -8.30494 -7.94150 -5.95469 -3.99777 -0.27137 2.50811 3.29464 3.37099 3.37380 3.38895 3.76468 4.35059 4.44440 4.44741 4.46455 4.66047 4.79165 5.26020 5.30268 5.34766 5.46795 5.60653 5.69582 5.82419 6.06626 6.31822 6.43277 6.45548 6.53989 6.75807 6.77846 6.88776 7.06817 7.19171 7.29901 7.46624 7.57101 7.66951 7.77533 7.96133 8.17647 8.51017 9.03159 9.63234 11.10409 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.026417 B = 0.004008 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.651729 B = 6983.774711 C = 7342.494098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.424 3.576 3 O -0.940 6.940 4 O -0.940 6.940 5 C -0.607 4.607 6 C 0.069 3.931 7 N -0.680 5.680 8 C 0.089 3.911 9 C -0.091 4.091 10 C -0.108 4.108 11 C 0.043 3.957 12 C -0.500 4.500 13 H 0.055 0.945 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.884 3.116 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.275 1.275 20 C -0.105 4.105 21 C -0.129 4.129 22 H 0.128 0.872 23 H 0.127 0.873 24 H 0.128 0.872 25 H 0.139 0.861 26 H 0.130 0.870 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.342 0.658 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.033 0.967 34 H 0.047 0.953 35 H 0.024 0.976 36 H 0.258 0.742 37 H 0.090 0.910 38 H 0.014 0.986 39 H 0.030 0.970 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.107 -2.422 -10.611 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.806 4.806 2 S 2.605 3.395 3 O -0.937 6.937 4 O -0.937 6.937 5 C -0.737 4.737 6 C -0.062 4.062 7 N -0.311 5.311 8 C -0.020 4.020 9 C -0.129 4.129 10 C -0.146 4.146 11 C 0.024 3.976 12 C -0.538 4.538 13 H 0.073 0.927 14 C -0.141 4.141 15 N -0.531 5.531 16 Si 0.712 3.288 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.143 4.143 21 C -0.168 4.168 22 H 0.146 0.854 23 H 0.146 0.854 24 H 0.147 0.853 25 H 0.158 0.842 26 H 0.149 0.851 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.160 0.840 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.032 0.968 39 H 0.048 0.952 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.524 -2.603 -11.464 18.685 hybrid contribution -0.931 1.012 1.773 2.244 sum -15.455 -1.592 -9.691 18.311 Atomic orbital electron populations 1.30278 1.27144 1.11515 1.11648 1.07754 0.78151 0.75808 0.77802 1.93614 1.78850 1.34612 1.86587 1.93602 1.78875 1.67013 1.54205 1.30395 1.06668 1.14259 1.22345 1.21576 0.89706 0.99540 0.95406 1.60749 1.12362 1.55636 1.02344 1.21671 0.84971 0.96727 0.98584 1.21337 0.97021 0.95727 0.98815 1.21562 0.94562 1.00099 0.98350 1.18693 0.96145 0.89183 0.93533 1.21166 1.22761 1.05476 1.04445 0.92657 1.24953 0.95240 0.96529 0.97338 1.69875 1.32588 1.12083 1.38508 0.86725 0.79988 0.77288 0.84766 1.20830 1.21436 1.20044 1.21447 0.92569 1.04079 0.96222 1.22039 0.99924 0.94717 1.00103 0.85376 0.85404 0.85343 0.84243 0.85121 0.93471 0.89729 0.84020 0.91743 0.93896 0.91232 0.94867 0.93410 0.95829 0.93191 0.89168 0.96765 0.95156 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.88 10.62 101.05 1.07 -1.81 16 2 S 2.42 20.35 5.36 -107.50 -0.58 19.78 16 3 O -0.94 -11.90 18.10 -57.83 -1.05 -12.95 16 4 O -0.94 -11.50 18.10 -57.83 -1.05 -12.55 16 5 C -0.61 -4.96 6.07 37.16 0.23 -4.73 16 6 C 0.07 0.87 5.49 -3.83 -0.02 0.85 16 7 N -0.68 -10.05 6.25 -106.73 -0.67 -10.72 16 8 C 0.09 1.58 2.47 -67.71 -0.17 1.42 16 9 C -0.09 -1.70 5.30 -26.73 -0.14 -1.85 16 10 C -0.11 -2.21 5.41 -26.74 -0.14 -2.35 16 11 C 0.04 1.04 2.58 -91.77 -0.24 0.80 16 12 C -0.50 -13.07 6.61 -34.44 -0.23 -13.30 16 13 H 0.06 1.44 6.71 -52.49 -0.35 1.08 16 14 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 15 N -0.89 -25.03 11.33 55.43 0.63 -24.40 16 16 Si 0.88 20.85 29.54 -169.99 -5.02 15.83 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 20 C -0.10 -2.42 5.23 -26.75 -0.14 -2.56 16 21 C -0.13 -2.62 4.95 -26.76 -0.13 -2.75 16 22 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 23 H 0.13 0.50 8.14 -51.92 -0.42 0.08 16 24 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 25 H 0.14 0.89 8.14 -51.92 -0.42 0.46 16 26 H 0.13 0.81 8.14 -51.92 -0.42 0.38 16 27 H 0.05 0.63 7.44 -51.93 -0.39 0.25 16 28 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 29 H 0.34 4.86 8.47 -39.29 -0.33 4.53 16 30 H 0.06 1.14 7.80 -51.93 -0.40 0.73 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.09 2.37 6.08 -51.93 -0.32 2.05 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.03 0.58 7.45 -51.93 -0.39 0.19 16 40 H 0.07 1.63 7.20 -51.93 -0.37 1.26 16 LS Contribution 325.58 15.07 4.91 4.91 Total: -1.00 -33.64 325.58 -9.51 -43.14 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.68 Total: 1.72 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -0.01 Total: -24.77 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: -0.04 Total: -35.12 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -2.09 Total: -25.49 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 20.35 SS G_CDS: -0.58 Total: 19.78 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.64 -9.51 -43.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.238 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds