Wall clock time and date at job start Mon Mar 30 2020 01:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42105 * 108.57706 * 2 1 4 4 O 1.42101 * 108.57944 * 228.97381 * 2 1 3 5 5 C 1.81397 * 101.92643 * 114.48432 * 2 1 3 6 6 C 1.52996 * 109.47494 * 179.97438 * 5 2 1 7 7 N 1.46896 * 109.47200 * 180.02562 * 6 5 2 8 8 C 1.46903 * 111.00418 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47667 * 205.00504 * 8 7 6 10 10 C 1.52997 * 109.47232 * 180.02562 * 9 8 7 11 11 C 1.52992 * 109.47296 * 59.99748 * 10 9 8 12 12 C 1.50700 * 109.47257 * 59.99902 * 11 10 9 13 13 H 1.07999 * 119.99988 * 359.97438 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47088 * 89.99795 * 16 14 12 18 18 H 1.48495 * 109.47293 * 209.99997 * 16 14 12 19 19 H 1.48507 * 109.47015 * 329.99955 * 16 14 12 20 20 C 1.53003 * 109.47195 * 299.99941 * 11 10 9 21 21 C 1.52994 * 109.46903 * 84.99606 * 8 7 6 22 22 H 1.09005 * 109.46812 * 305.51382 * 1 2 3 23 23 H 1.09001 * 109.47141 * 65.51417 * 1 2 3 24 24 H 1.09001 * 109.46742 * 185.51797 * 1 2 3 25 25 H 1.09009 * 109.46826 * 59.99857 * 5 2 1 26 26 H 1.09002 * 109.46977 * 300.00558 * 5 2 1 27 27 H 1.08995 * 109.46990 * 60.00198 * 6 5 2 28 28 H 1.09002 * 109.47484 * 300.00272 * 6 5 2 29 29 H 1.00896 * 111.00418 * 303.95553 * 7 6 5 30 30 H 1.09005 * 109.46638 * 325.00521 * 8 7 6 31 31 H 1.08998 * 109.46987 * 59.99359 * 9 8 7 32 32 H 1.09005 * 109.46648 * 300.00005 * 9 8 7 33 33 H 1.08996 * 109.46678 * 299.99615 * 10 9 8 34 34 H 1.09004 * 109.46869 * 179.97438 * 10 9 8 35 35 H 1.08997 * 109.47279 * 180.02562 * 11 10 9 36 36 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.47453 * 180.02562 * 20 11 10 38 38 H 1.08996 * 109.47248 * 300.00419 * 20 11 10 39 39 H 1.08999 * 109.47824 * 300.01002 * 21 8 7 40 40 H 1.09005 * 109.46726 * 60.00969 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1889 -0.7356 1.6152 6 6 3.7056 -0.8194 1.7979 7 7 4.0091 -1.4157 3.1056 8 6 5.4597 -1.5129 3.3161 9 6 5.7566 -2.6366 4.3111 10 6 7.2674 -2.7374 4.5307 11 6 7.7914 -1.4120 5.0870 12 6 7.1119 -1.1140 6.3987 13 1 6.3792 -1.8010 6.7956 14 6 7.4248 0.0364 7.0915 15 7 8.3203 0.8708 6.6103 16 14 6.5831 0.4054 8.7177 17 1 7.3737 -0.1823 9.8289 18 1 6.4863 1.8756 8.9026 19 1 5.2199 -0.1838 8.7144 20 6 7.4945 -0.2882 4.0920 21 6 5.9842 -0.1876 3.8720 22 1 -0.3633 0.5970 0.8365 23 1 -0.3633 0.4259 -0.9352 24 1 -0.3633 -1.0229 0.0988 25 1 1.7611 -1.7369 1.6665 26 1 1.7611 -0.1170 2.4042 27 1 4.1336 0.1816 1.7464 28 1 4.1329 -1.4383 1.0088 29 1 3.5693 -0.8965 3.8506 30 1 5.9508 -1.7286 2.3672 31 1 5.3828 -3.5808 3.9149 32 1 5.2654 -2.4208 5.2600 33 1 7.7588 -2.9529 3.5820 34 1 7.4788 -3.5377 5.2399 35 1 8.8677 -1.4836 5.2430 36 1 8.5401 1.6802 7.0976 37 1 7.8682 0.6560 4.4880 38 1 7.9859 -0.5038 3.1432 39 1 5.7727 0.6130 3.1632 40 1 5.4931 0.0282 4.8209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:45 Heat of formation + Delta-G solvation = -114.012374 kcal Electronic energy + Delta-G solvation = -19961.200330 eV Core-core repulsion = 16901.393470 eV Total energy + Delta-G solvation = -3059.806859 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.89771 -37.95775 -37.05632 -36.75327 -34.27279 -32.12228 -31.22298 -30.33584 -28.77350 -26.55333 -23.73719 -23.06979 -22.25677 -20.54638 -19.72761 -17.89291 -17.64073 -17.17917 -17.02321 -16.66041 -16.22220 -15.92646 -15.48973 -14.95317 -14.84001 -14.45907 -13.97134 -13.86937 -13.69540 -13.50971 -13.17792 -13.07999 -12.99510 -12.86955 -12.75869 -12.64076 -12.49583 -12.38195 -12.15741 -11.98548 -11.74552 -11.49082 -11.46685 -10.90468 -10.73395 -10.59103 -10.31683 -9.29455 -8.01836 -6.12346 -0.89020 1.41369 1.43517 1.51906 1.93535 2.46563 2.71609 3.17662 3.26289 3.33454 3.71669 3.91893 4.03630 4.15981 4.21999 4.29769 4.45118 4.47386 4.64627 4.70829 4.75481 4.79808 4.87990 4.96812 5.00730 5.02818 5.12578 5.26805 5.44867 5.55726 5.58067 5.64989 5.73533 5.95788 6.11631 6.22074 6.44621 6.49480 6.98323 7.53758 9.02975 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.026417 B = 0.004008 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.651729 B = 6983.774711 C = 7342.494098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.630 4.630 2 S 2.426 3.574 3 O -0.993 6.993 4 O -0.987 6.987 5 C -0.599 4.599 6 C 0.055 3.945 7 N -0.672 5.672 8 C 0.097 3.903 9 C -0.083 4.083 10 C -0.103 4.103 11 C 0.038 3.962 12 C -0.504 4.504 13 H 0.057 0.943 14 C 0.011 3.989 15 N -0.922 5.922 16 Si 0.943 3.057 17 H -0.281 1.281 18 H -0.290 1.290 19 H -0.264 1.264 20 C -0.102 4.102 21 C -0.119 4.119 22 H 0.153 0.847 23 H 0.137 0.863 24 H 0.156 0.844 25 H 0.165 0.835 26 H 0.156 0.844 27 H 0.034 0.966 28 H 0.081 0.919 29 H 0.346 0.654 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.048 0.952 35 H -0.015 1.015 36 H 0.256 0.744 37 H 0.054 0.946 38 H 0.023 0.977 39 H 0.037 0.963 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.338 -3.462 -10.661 21.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.783 4.783 2 S 2.613 3.387 3 O -0.990 6.990 4 O -0.984 6.984 5 C -0.729 4.729 6 C -0.075 4.075 7 N -0.302 5.302 8 C -0.012 4.012 9 C -0.121 4.121 10 C -0.141 4.141 11 C 0.019 3.981 12 C -0.542 4.542 13 H 0.075 0.925 14 C -0.186 4.186 15 N -0.562 5.562 16 Si 0.770 3.230 17 H -0.207 1.207 18 H -0.216 1.216 19 H -0.188 1.188 20 C -0.141 4.141 21 C -0.158 4.158 22 H 0.171 0.829 23 H 0.156 0.844 24 H 0.174 0.826 25 H 0.183 0.817 26 H 0.174 0.826 27 H 0.052 0.948 28 H 0.100 0.900 29 H 0.165 0.835 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.004 0.996 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.056 0.944 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.725 -3.653 -11.523 21.455 hybrid contribution 0.050 1.321 1.773 2.212 sum -17.676 -2.332 -9.750 20.320 Atomic orbital electron populations 1.30033 1.20781 1.14104 1.13408 1.07325 0.80317 0.73968 0.77079 1.93549 1.81360 1.36920 1.87147 1.93541 1.81272 1.67588 1.56019 1.30308 1.03446 1.16366 1.22732 1.21704 0.93145 0.98573 0.94114 1.60716 1.09997 1.56034 1.03452 1.21479 0.87028 0.94560 0.98175 1.21245 0.95224 0.97184 0.98484 1.21477 0.96152 0.97699 0.98801 1.18691 0.93875 0.91771 0.93730 1.21425 1.22412 1.05253 1.05094 0.92509 1.25668 0.95923 0.96586 1.00465 1.70036 1.34022 1.12430 1.39750 0.85774 0.79466 0.76854 0.80893 1.20737 1.21590 1.18806 1.21321 0.94824 1.01887 0.96047 1.21912 0.97519 0.96931 0.99454 0.82866 0.84426 0.82568 0.81677 0.82640 0.94805 0.90042 0.83517 0.91330 0.91558 0.92677 0.93446 0.93330 0.99637 0.93507 0.92700 0.95871 0.94413 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -2.78 10.62 113.37 1.20 -1.57 16 2 S 2.43 36.77 5.36 -56.49 -0.30 36.47 16 3 O -0.99 -24.90 18.10 -127.37 -2.31 -27.21 16 4 O -0.99 -23.51 18.10 -127.37 -2.31 -25.82 16 5 C -0.60 -8.03 6.07 71.98 0.44 -7.59 16 6 C 0.06 1.31 5.49 86.30 0.47 1.78 16 7 N -0.67 -18.38 6.25 -491.59 -3.07 -21.45 16 8 C 0.10 3.32 2.47 44.91 0.11 3.43 16 9 C -0.08 -2.98 5.30 30.59 0.16 -2.81 16 10 C -0.10 -4.16 5.41 30.59 0.17 -4.00 16 11 C 0.04 1.87 2.58 -11.54 -0.03 1.84 16 12 C -0.50 -26.61 6.61 25.60 0.17 -26.44 16 13 H 0.06 2.93 6.71 -2.91 -0.02 2.91 16 14 C 0.01 0.60 5.30 84.66 0.45 1.05 16 15 N -0.92 -53.35 11.33 21.45 0.24 -53.11 16 16 Si 0.94 43.01 29.54 68.60 2.03 45.03 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 20 C -0.10 -4.85 5.23 30.58 0.16 -4.69 16 21 C -0.12 -4.84 4.95 30.58 0.15 -4.69 16 22 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 23 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.16 -0.04 8.14 -2.39 -0.02 -0.06 16 25 H 0.17 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.16 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.03 0.89 7.44 -2.39 -0.02 0.88 16 28 H 0.08 1.98 8.05 -2.39 -0.02 1.96 16 29 H 0.35 9.07 8.47 -89.70 -0.76 8.31 16 30 H 0.07 2.31 7.80 -2.38 -0.02 2.29 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 32 H 0.05 2.13 6.62 -2.38 -0.02 2.12 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 35 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 36 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 37 H 0.05 3.00 6.08 -2.39 -0.01 2.98 16 38 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.04 1.44 7.45 -2.39 -0.02 1.43 16 40 H 0.05 2.38 7.20 -2.38 -0.02 2.36 16 Total: -1.00 -75.23 325.58 -2.01 -77.24 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.26 Total: 12.53 kcal Atomic # 6 Polarization: -47.13 SS G_CDS: 3.45 Total: -43.68 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -2.83 Total: -74.56 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -4.61 Total: -53.03 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 36.77 SS G_CDS: -0.30 Total: 36.47 kcal Total: -75.23 -2.01 -77.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.775 kcal (2) G-P(sol) polarization free energy of solvation -75.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds