Wall clock time and date at job start Mon Mar 30 2020 02:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99779 * 2 1 4 4 H 1.48502 * 109.46863 * 239.99882 * 3 2 1 5 5 H 1.48498 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47136 * 119.99932 * 3 2 1 7 7 C 1.37876 * 120.00563 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00686 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99560 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46958 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47020 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47037 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00230 * 179.97438 * 12 11 10 14 14 O 1.21287 * 119.99886 * 355.00289 * 13 12 11 15 15 C 1.50698 * 120.00363 * 175.00545 * 13 12 11 16 16 C 1.50699 * 115.55001 * 40.13496 * 15 13 12 17 17 C 1.38387 * 120.00487 * 75.21885 * 16 15 13 18 18 N 1.32122 * 119.99623 * 179.73308 * 17 16 15 19 19 C 1.32151 * 120.00491 * 0.54726 * 18 17 16 20 20 C 1.38348 * 119.99684 * 359.72802 * 19 18 17 21 21 N 1.32123 * 119.99613 * 255.49898 * 16 15 13 22 22 C 1.53007 * 117.49787 * 254.42621 * 15 13 12 23 23 C 1.53003 * 117.49781 * 185.80380 * 15 13 12 24 24 H 0.96998 * 120.00518 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46871 * 59.99721 * 9 7 2 26 26 H 1.08996 * 109.46960 * 299.99858 * 9 7 2 27 27 H 1.09000 * 109.47354 * 59.99660 * 10 9 7 28 28 H 1.09001 * 109.46824 * 299.99397 * 10 9 7 29 29 H 1.08996 * 109.46925 * 299.99857 * 11 10 9 30 30 H 1.08996 * 109.46843 * 59.99682 * 11 10 9 31 31 H 0.97004 * 120.00279 * 0.02562 * 12 11 10 32 32 H 1.08004 * 119.99630 * 0.02893 * 17 16 15 33 33 H 1.07998 * 120.00151 * 179.70760 * 19 18 17 34 34 H 1.07999 * 119.99837 * 179.97438 * 20 19 18 35 35 H 1.08994 * 117.49736 * 359.97438 * 22 15 13 36 36 H 1.08998 * 117.49497 * 145.02248 * 22 15 13 37 37 H 1.09001 * 117.49756 * 214.97516 * 23 15 13 38 38 H 1.08996 * 117.49984 * 0.02562 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1005 0.0018 13 6 1.9833 -7.3712 0.0019 14 8 0.7946 -7.5942 0.0930 15 6 2.9580 -8.5150 -0.1111 16 6 4.2382 -8.3574 0.6682 17 6 4.2371 -8.5239 2.0420 18 7 5.3605 -8.3909 2.7244 19 6 6.4833 -8.0882 2.0965 20 6 6.4833 -7.9162 0.7238 21 7 5.3607 -8.0548 0.0404 22 6 3.0318 -9.2506 -1.4507 23 6 2.3798 -9.9255 -0.2422 24 1 -0.4851 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8714 -3.6038 0.8922 28 1 2.8726 -3.6046 -0.8878 29 1 0.8528 -5.0447 0.8905 30 1 0.8547 -5.0449 -0.8894 31 1 3.3861 -5.9233 0.0029 32 1 3.3187 -8.7672 2.5557 33 1 7.4007 -7.9748 2.6550 34 1 7.4007 -7.6684 0.2106 35 1 2.3751 -8.9074 -2.2501 36 1 4.0065 -9.6205 -1.7686 37 1 2.9257 -10.7395 0.2348 38 1 1.2945 -10.0261 -0.2471 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178028045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:05 Heat of formation + Delta-G solvation = 23.292471 kcal Electronic energy + Delta-G solvation = -20306.715406 eV Core-core repulsion = 17149.711332 eV Total energy + Delta-G solvation = -3157.004075 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.60600 -39.82527 -36.94706 -35.41144 -34.38822 -33.34301 -31.70003 -31.15320 -27.24483 -25.66636 -24.89474 -23.78975 -22.58819 -22.22042 -20.71265 -19.61356 -17.89952 -17.72008 -17.13106 -16.51819 -15.93174 -15.59974 -15.26308 -14.89085 -14.74422 -14.47665 -14.13092 -13.72496 -13.43230 -12.68607 -12.29455 -11.95377 -11.89517 -11.81428 -11.73886 -11.62471 -11.08670 -10.90923 -10.84652 -10.75973 -10.62317 -10.14437 -9.89330 -9.59589 -9.38056 -9.31512 -9.13637 -8.83862 -8.38114 -6.02743 -4.06050 0.38949 0.79148 2.43610 3.13063 3.28366 3.31396 3.36107 3.38188 3.55563 3.61829 3.95055 4.15047 4.37438 4.43281 4.55811 4.61158 4.68636 4.91037 5.04156 5.15844 5.32934 5.34307 5.42833 5.60855 5.69239 5.73356 5.87709 6.00044 6.12004 6.41703 6.55882 6.78023 6.92262 6.96710 7.43234 7.61146 7.61618 7.73934 7.95430 8.26060 8.37042 9.00093 9.58139 11.08524 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020109 B = 0.003676 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.070271 B = 7614.903382 C = 8522.361895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.717 5.717 13 C 0.552 3.448 14 O -0.535 6.535 15 C -0.123 4.123 16 C 0.113 3.887 17 C 0.069 3.931 18 N -0.434 5.434 19 C 0.048 3.952 20 C 0.054 3.946 21 N -0.426 5.426 22 C -0.127 4.127 23 C -0.131 4.131 24 H 0.262 0.738 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.397 0.603 32 H 0.170 0.830 33 H 0.172 0.828 34 H 0.173 0.827 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.181 -20.686 0.672 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.366 5.366 13 C 0.336 3.664 14 O -0.412 6.412 15 C -0.128 4.128 16 C -0.027 4.027 17 C -0.091 4.091 18 N -0.148 5.148 19 C -0.112 4.112 20 C -0.106 4.106 21 N -0.141 5.141 22 C -0.164 4.164 23 C -0.169 4.169 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.231 0.769 32 H 0.187 0.813 33 H 0.189 0.811 34 H 0.190 0.810 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.154 -20.685 0.738 23.512 hybrid contribution 1.107 1.236 0.070 1.661 sum 12.262 -19.449 0.807 23.005 Atomic orbital electron populations 1.69948 1.06058 1.26836 1.50418 1.25017 0.94852 0.99274 0.95215 0.86641 0.79577 0.83081 0.78598 1.20229 1.21219 1.20246 1.21155 0.92938 0.90943 1.51161 0.92744 1.19022 0.93792 0.90772 0.97689 1.21894 0.99799 0.93344 1.00838 1.21713 0.91789 0.84974 1.02188 1.46139 1.10908 1.05693 1.73907 1.19059 0.87825 0.82958 0.76548 1.90716 1.16174 1.84443 1.49839 1.19944 0.93298 0.95364 1.04147 1.20991 0.92745 0.96810 0.92200 1.23587 0.97655 0.95882 0.91962 1.68534 0.98727 1.08256 1.39267 1.23871 0.97661 0.95821 0.93821 1.23846 0.97232 0.96508 0.93058 1.68227 0.98257 1.07880 1.39744 1.22999 1.03251 1.00087 0.90101 1.23133 1.02420 0.90749 1.00586 0.92839 0.96203 0.96237 0.92898 0.92707 0.91477 0.91523 0.76903 0.81295 0.81099 0.80951 0.87508 0.87315 0.87924 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.12 -2.44 5.27 -26.73 -0.14 -2.58 16 11 C 0.12 2.09 5.68 -4.04 -0.02 2.07 16 12 N -0.72 -11.09 5.49 -60.30 -0.33 -11.42 16 13 C 0.55 8.34 7.32 -10.99 -0.08 8.26 16 14 O -0.53 -9.75 16.28 5.55 0.09 -9.66 16 15 C -0.12 -1.40 2.22 -156.81 -0.35 -1.75 16 16 C 0.11 1.23 5.17 -82.41 -0.43 0.81 16 17 C 0.07 0.74 10.92 -17.37 -0.19 0.55 16 18 N -0.43 -4.64 10.50 -13.06 -0.14 -4.78 16 19 C 0.05 0.39 11.22 -17.37 -0.20 0.19 16 20 C 0.05 0.43 11.22 -17.37 -0.19 0.24 16 21 N -0.43 -4.46 10.25 -9.29 -0.10 -4.56 16 22 C -0.13 -1.21 9.79 -26.72 -0.26 -1.47 16 23 C -0.13 -1.21 9.75 -26.73 -0.26 -1.47 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.40 5.65 7.87 -40.82 -0.32 5.33 16 32 H 0.17 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.12 1.17 7.68 -51.93 -0.40 0.78 16 LS Contribution 333.81 15.07 5.03 5.03 Total: -1.00 -33.30 333.81 -7.73 -41.03 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.33 Total: 2.12 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -2.67 Total: -8.16 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.17 Total: -46.93 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.30 -7.73 -41.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178028045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.325 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds