Wall clock time and date at job start Mon Mar 30 2020 02:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00153 * 2 1 4 4 H 1.48507 * 109.46830 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47128 * 299.99594 * 3 2 1 6 6 H 1.48498 * 109.47251 * 59.99989 * 3 2 1 7 7 C 1.37882 * 119.99544 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99457 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99925 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47043 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47004 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46746 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99970 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99801 * 359.97438 * 13 12 11 15 15 C 1.50707 * 120.00081 * 179.97438 * 13 12 11 16 16 C 1.50697 * 115.54624 * 325.57887 * 15 13 12 17 17 N 1.31789 * 119.12763 * 34.42236 * 16 15 13 18 18 C 1.32336 * 120.82102 * 179.97438 * 17 16 15 19 19 C 1.38596 * 119.10384 * 359.97438 * 18 17 16 20 20 C 1.38596 * 118.40056 * 0.28021 * 19 18 17 21 21 N 1.31796 * 119.11856 * 214.39375 * 16 15 13 22 22 C 1.52998 * 117.49736 * 111.24622 * 15 13 12 23 23 C 1.52999 * 117.49755 * 179.91013 * 15 13 12 24 24 H 0.97003 * 120.00186 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47658 * 60.00429 * 9 7 2 26 26 H 1.08996 * 109.47567 * 299.99716 * 9 7 2 27 27 H 1.08998 * 109.46552 * 59.99740 * 10 9 7 28 28 H 1.08996 * 109.46698 * 300.00237 * 10 9 7 29 29 H 1.08995 * 109.47277 * 60.00113 * 11 10 9 30 30 H 1.08998 * 109.47076 * 299.99843 * 11 10 9 31 31 H 0.97006 * 120.00402 * 359.97438 * 12 11 10 32 32 H 1.08001 * 120.44446 * 179.97438 * 18 17 16 33 33 H 1.08002 * 120.79700 * 179.97438 * 19 18 17 34 34 H 1.07999 * 120.44937 * 179.72640 * 20 19 18 35 35 H 1.08998 * 117.50147 * 214.99750 * 22 15 13 36 36 H 1.09002 * 117.50326 * 0.03268 * 22 15 13 37 37 H 1.09000 * 117.49884 * 359.96955 * 23 15 13 38 38 H 1.08995 * 117.49789 * 144.97385 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2508 -2.4991 0.0017 10 6 2.2450 -3.6622 0.0027 11 6 1.4799 -4.9871 0.0033 12 7 2.4319 -6.1007 0.0049 13 6 1.9826 -7.3713 0.0051 14 8 0.7902 -7.5929 0.0044 15 6 2.9618 -8.5169 0.0062 16 6 4.2371 -8.2824 -0.7617 17 7 4.7595 -7.0726 -0.7836 18 6 5.8785 -6.8292 -1.4468 19 6 6.5008 -7.8668 -2.1228 20 6 5.9185 -9.1238 -2.0810 21 7 4.8007 -9.2928 -1.3929 22 6 3.0462 -9.3729 1.2715 23 6 2.3893 -9.9357 0.0085 24 1 -0.4850 0.8401 -0.0004 25 1 0.6239 -2.5575 -0.8880 26 1 0.6246 -2.5563 0.8919 27 1 2.8717 -3.6036 0.8927 28 1 2.8717 -3.6052 -0.8873 29 1 0.8536 -5.0454 -0.8868 30 1 0.8530 -5.0443 0.8931 31 1 3.3856 -5.9235 0.0051 32 1 6.3010 -5.8353 -1.4611 33 1 7.4148 -7.6987 -2.6731 34 1 6.3730 -9.9550 -2.5995 35 1 4.0241 -9.7666 1.5485 36 1 2.3931 -9.1079 2.1029 37 1 1.3043 -10.0406 0.0097 38 1 2.9348 -10.6994 -0.5456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178353057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:55 Heat of formation + Delta-G solvation = 31.060936 kcal Electronic energy + Delta-G solvation = -20416.838260 eV Core-core repulsion = 17260.171052 eV Total energy + Delta-G solvation = -3156.667209 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.58732 -39.59421 -36.76922 -35.19726 -34.11612 -33.20756 -32.08562 -31.04867 -27.19089 -25.55025 -24.88574 -23.61147 -22.63249 -22.06405 -20.56080 -19.68082 -18.01645 -17.58899 -16.58289 -16.31850 -15.66098 -15.34961 -15.17119 -14.96583 -14.69214 -14.42420 -13.96641 -13.79205 -13.54818 -12.90816 -12.26609 -11.79397 -11.71215 -11.65841 -11.31335 -11.19957 -11.07642 -10.88864 -10.86359 -10.64988 -10.53461 -9.96239 -9.79829 -9.63122 -9.54302 -9.29958 -9.05913 -8.57269 -8.34507 -5.98978 -4.01649 0.49002 0.73450 2.60892 3.26352 3.29434 3.31325 3.38626 3.42211 3.59137 3.60854 3.98490 4.26030 4.46382 4.61229 4.63043 4.72321 4.75148 4.90073 4.99453 5.36770 5.39330 5.42740 5.55220 5.77644 5.85352 5.87455 5.98989 6.01608 6.26300 6.63366 6.65721 6.69090 6.97580 7.08529 7.68214 7.70909 7.81653 7.98028 8.00776 8.42074 8.58764 9.05322 9.62178 11.12453 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021934 B = 0.003733 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.241329 B = 7499.154634 C = 8554.273992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.118 4.118 11 C 0.114 3.886 12 N -0.710 5.710 13 C 0.550 3.450 14 O -0.546 6.546 15 C -0.116 4.116 16 C 0.364 3.636 17 N -0.518 5.518 18 C 0.161 3.839 19 C -0.234 4.234 20 C 0.154 3.846 21 N -0.513 5.513 22 C -0.129 4.129 23 C -0.117 4.117 24 H 0.260 0.740 25 H 0.018 0.982 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.413 0.587 32 H 0.176 0.824 33 H 0.151 0.849 34 H 0.171 0.829 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.380 -20.447 -2.372 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.156 4.156 11 C -0.009 4.009 12 N -0.366 5.366 13 C 0.333 3.667 14 O -0.424 6.424 15 C -0.121 4.121 16 C 0.097 3.903 17 N -0.233 5.233 18 C -0.005 4.005 19 C -0.256 4.256 20 C -0.012 4.012 21 N -0.226 5.226 22 C -0.167 4.167 23 C -0.154 4.154 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.256 0.744 32 H 0.193 0.807 33 H 0.169 0.831 34 H 0.188 0.812 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.585 -20.575 -1.882 24.192 hybrid contribution 1.866 1.405 -0.659 2.427 sum 14.452 -19.171 -2.541 24.142 Atomic orbital electron populations 1.69980 1.06051 1.26506 1.50784 1.25034 0.94848 0.99271 0.95364 0.86534 0.80042 0.83819 0.77573 1.19777 1.21041 1.21007 1.21250 0.93025 0.90940 1.50601 0.92607 1.19044 0.93887 0.90894 0.97625 1.21849 0.99655 0.93246 1.00832 1.21650 0.92042 0.85437 1.01765 1.46594 1.12630 1.04905 1.72480 1.18941 0.87572 0.83291 0.76854 1.90690 1.15835 1.84775 1.51142 1.19902 0.92802 0.95028 1.04366 1.21678 0.93246 0.84425 0.90955 1.67647 1.12273 1.23151 1.20181 1.23352 0.88783 1.00149 0.88168 1.22936 1.03654 0.95468 1.03549 1.23274 0.89528 0.96821 0.91590 1.68095 1.10768 1.34699 1.09088 1.23100 1.03370 0.99346 0.90910 1.23120 1.02099 0.91255 0.98972 0.93023 0.96317 0.96256 0.92759 0.92883 0.92028 0.91838 0.74384 0.80726 0.83143 0.81187 0.87819 0.87088 0.86606 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.47 5.27 -26.73 -0.14 -2.61 16 11 C 0.11 2.22 5.67 -4.04 -0.02 2.19 16 12 N -0.71 -12.23 5.33 -60.30 -0.32 -12.55 16 13 C 0.55 9.44 7.38 -10.98 -0.08 9.36 16 14 O -0.55 -11.01 16.26 5.56 0.09 -10.92 16 15 C -0.12 -1.55 2.55 -156.81 -0.40 -1.95 16 16 C 0.36 4.59 7.11 -157.20 -1.12 3.48 16 17 N -0.52 -6.37 7.22 -10.73 -0.08 -6.45 16 18 C 0.16 1.43 11.30 -17.20 -0.19 1.24 16 19 C -0.23 -1.57 10.17 -39.32 -0.40 -1.97 16 20 C 0.15 1.17 11.31 -17.20 -0.19 0.98 16 21 N -0.51 -5.57 9.31 -10.73 -0.10 -5.66 16 22 C -0.13 -1.35 9.94 -26.69 -0.27 -1.61 16 23 C -0.12 -1.29 9.53 -26.69 -0.25 -1.55 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.41 6.54 5.50 -40.82 -0.22 6.32 16 32 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.15 0.51 8.06 -52.49 -0.42 0.08 16 34 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.12 1.35 7.67 -51.93 -0.40 0.95 16 38 H 0.12 1.14 7.51 -51.93 -0.39 0.75 16 LS Contribution 328.08 15.07 4.94 4.94 Total: -1.00 -34.61 328.08 -8.57 -43.18 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.20 Total: 2.77 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -3.62 Total: -5.53 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.24 Total: -51.09 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.61 -8.57 -43.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178353057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.241 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds