Wall clock time and date at job start Mon Mar 30 2020 02:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00153 * 2 1 4 4 H 1.48507 * 109.46830 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47128 * 299.99594 * 3 2 1 6 6 H 1.48498 * 109.47251 * 59.99989 * 3 2 1 7 7 C 1.37882 * 119.99544 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99457 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99925 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47043 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47004 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46746 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99970 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99801 * 359.97438 * 13 12 11 15 15 C 1.50707 * 120.00081 * 179.97438 * 13 12 11 16 16 C 1.50697 * 115.54624 * 325.57887 * 15 13 12 17 17 N 1.31789 * 119.12763 * 34.42236 * 16 15 13 18 18 C 1.32336 * 120.82102 * 179.97438 * 17 16 15 19 19 C 1.38596 * 119.10384 * 359.97438 * 18 17 16 20 20 C 1.38596 * 118.40056 * 0.28021 * 19 18 17 21 21 N 1.31796 * 119.11856 * 214.39375 * 16 15 13 22 22 C 1.52998 * 117.49736 * 111.24622 * 15 13 12 23 23 C 1.52999 * 117.49755 * 179.91013 * 15 13 12 24 24 H 0.97003 * 120.00186 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47658 * 60.00429 * 9 7 2 26 26 H 1.08996 * 109.47567 * 299.99716 * 9 7 2 27 27 H 1.08998 * 109.46552 * 59.99740 * 10 9 7 28 28 H 1.08996 * 109.46698 * 300.00237 * 10 9 7 29 29 H 1.08995 * 109.47277 * 60.00113 * 11 10 9 30 30 H 1.08998 * 109.47076 * 299.99843 * 11 10 9 31 31 H 0.97006 * 120.00402 * 359.97438 * 12 11 10 32 32 H 1.08001 * 120.44446 * 179.97438 * 18 17 16 33 33 H 1.08002 * 120.79700 * 179.97438 * 19 18 17 34 34 H 1.07999 * 120.44937 * 179.72640 * 20 19 18 35 35 H 1.08998 * 117.50147 * 214.99750 * 22 15 13 36 36 H 1.09002 * 117.50326 * 0.03268 * 22 15 13 37 37 H 1.09000 * 117.49884 * 359.96955 * 23 15 13 38 38 H 1.08995 * 117.49789 * 144.97385 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2508 -2.4991 0.0017 10 6 2.2450 -3.6622 0.0027 11 6 1.4799 -4.9871 0.0033 12 7 2.4319 -6.1007 0.0049 13 6 1.9826 -7.3713 0.0051 14 8 0.7902 -7.5929 0.0044 15 6 2.9618 -8.5169 0.0062 16 6 4.2371 -8.2824 -0.7617 17 7 4.7595 -7.0726 -0.7836 18 6 5.8785 -6.8292 -1.4468 19 6 6.5008 -7.8668 -2.1228 20 6 5.9185 -9.1238 -2.0810 21 7 4.8007 -9.2928 -1.3929 22 6 3.0462 -9.3729 1.2715 23 6 2.3893 -9.9357 0.0085 24 1 -0.4850 0.8401 -0.0004 25 1 0.6239 -2.5575 -0.8880 26 1 0.6246 -2.5563 0.8919 27 1 2.8717 -3.6036 0.8927 28 1 2.8717 -3.6052 -0.8873 29 1 0.8536 -5.0454 -0.8868 30 1 0.8530 -5.0443 0.8931 31 1 3.3856 -5.9235 0.0051 32 1 6.3010 -5.8353 -1.4611 33 1 7.4148 -7.6987 -2.6731 34 1 6.3730 -9.9550 -2.5995 35 1 4.0241 -9.7666 1.5485 36 1 2.3931 -9.1079 2.1029 37 1 1.3043 -10.0406 0.0097 38 1 2.9348 -10.6994 -0.5456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178353057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:55 Heat of formation + Delta-G solvation = 8.575204 kcal Electronic energy + Delta-G solvation = -20417.813315 eV Core-core repulsion = 17260.171052 eV Total energy + Delta-G solvation = -3157.642263 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.35241 -40.80001 -37.87584 -36.79951 -35.27654 -34.72078 -33.10979 -32.58634 -28.94554 -26.71989 -25.56300 -25.06820 -23.57166 -23.37730 -22.30378 -20.90685 -19.02272 -18.54294 -18.35472 -17.29931 -16.89632 -16.74145 -16.42618 -16.15515 -15.82498 -15.70942 -15.20848 -14.96554 -14.45030 -14.26823 -13.87532 -13.76579 -13.54841 -12.78324 -12.59017 -12.51650 -12.37060 -12.12742 -11.95068 -11.92758 -11.71087 -11.65424 -11.62514 -11.25342 -10.95338 -10.56738 -10.33802 -10.26634 -10.07003 -8.19711 -6.31513 -0.17437 0.11770 1.38578 1.41508 1.42148 1.55492 2.12306 2.42390 2.47414 2.67700 2.82339 3.13892 3.20782 3.64985 3.76392 3.85331 3.91376 4.00459 4.15036 4.16619 4.21539 4.40441 4.52141 4.59461 4.68377 4.87499 4.90003 4.91793 4.99546 5.13113 5.15514 5.39287 5.45877 5.52533 5.67974 5.82537 6.00585 6.21582 6.61626 6.85376 7.00227 7.25579 7.37986 8.92845 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021934 B = 0.003733 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.241329 B = 7499.154634 C = 8554.273992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.970 3.030 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.097 4.097 11 C 0.125 3.875 12 N -0.704 5.704 13 C 0.545 3.455 14 O -0.585 6.585 15 C -0.133 4.133 16 C 0.342 3.658 17 N -0.550 5.550 18 C 0.141 3.859 19 C -0.213 4.213 20 C 0.146 3.854 21 N -0.525 5.525 22 C -0.111 4.111 23 C -0.108 4.108 24 H 0.263 0.737 25 H -0.008 1.008 26 H -0.007 1.007 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.421 0.579 32 H 0.196 0.804 33 H 0.190 0.810 34 H 0.208 0.792 35 H 0.125 0.875 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.768 -20.953 -2.968 27.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.794 3.206 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.013 4.013 10 C -0.135 4.135 11 C 0.001 3.999 12 N -0.361 5.361 13 C 0.331 3.669 14 O -0.466 6.466 15 C -0.138 4.138 16 C 0.075 3.925 17 N -0.265 5.265 18 C -0.023 4.023 19 C -0.234 4.234 20 C -0.019 4.019 21 N -0.240 5.240 22 C -0.149 4.149 23 C -0.145 4.145 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.012 0.988 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.266 0.734 32 H 0.213 0.787 33 H 0.208 0.792 34 H 0.225 0.775 35 H 0.143 0.857 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 16.025 -21.096 -2.484 26.609 hybrid contribution 0.848 1.522 -0.529 1.820 sum 16.873 -19.575 -3.013 26.018 Atomic orbital electron populations 1.70126 1.07997 1.27770 1.51689 1.26048 0.95767 1.03616 0.94692 0.85329 0.79189 0.78422 0.77666 1.18121 1.20507 1.20493 1.21682 0.93731 0.91887 1.50495 0.91543 1.18946 0.94347 0.92908 0.95089 1.21552 0.98392 0.91786 1.01786 1.21302 0.92110 0.85937 1.00559 1.46514 1.12574 1.04535 1.72493 1.19620 0.87861 0.83972 0.75446 1.90659 1.17787 1.85415 1.52777 1.19769 0.93090 0.93967 1.07007 1.21420 0.93480 0.85249 0.92363 1.67501 1.13967 1.23357 1.21691 1.23867 0.88235 1.01950 0.88244 1.23346 1.04078 0.94224 1.01755 1.24002 0.88538 0.98540 0.90827 1.68061 1.12084 1.34267 1.09539 1.23210 1.04226 0.97416 0.90073 1.23146 1.01643 0.90254 0.99498 0.92782 0.99000 0.98821 0.91615 0.91857 0.93554 0.92938 0.73367 0.78695 0.79241 0.77505 0.85702 0.87225 0.87734 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.98 13.29 21.45 0.28 -57.69 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.25 16 3 Si 0.97 44.22 29.54 68.60 2.03 46.25 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.54 -30.86 9.11 25.60 0.23 -30.63 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.02 1.35 4.97 29.85 0.15 1.49 16 10 C -0.10 -4.12 5.27 30.60 0.16 -3.96 16 11 C 0.13 5.05 5.67 86.38 0.49 5.54 16 12 N -0.70 -24.71 5.33 -463.06 -2.47 -27.18 16 13 C 0.55 19.22 7.38 87.66 0.65 19.87 16 14 O -0.59 -24.61 16.26 -3.03 -0.05 -24.66 16 15 C -0.13 -3.53 2.55 -53.67 -0.14 -3.67 16 16 C 0.34 8.28 7.11 138.75 0.99 9.27 16 17 N -0.55 -12.91 7.22 -187.85 -1.36 -14.27 16 18 C 0.14 2.18 11.30 84.70 0.96 3.14 16 19 C -0.21 -2.06 10.17 22.44 0.23 -1.83 16 20 C 0.15 1.73 11.31 84.70 0.96 2.69 16 21 N -0.53 -10.32 9.31 -187.85 -1.75 -12.07 16 22 C -0.11 -2.22 9.94 30.62 0.30 -1.92 16 23 C -0.11 -2.33 9.53 30.62 0.29 -2.04 16 24 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.42 13.32 5.50 -92.70 -0.51 12.81 16 32 H 0.20 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.19 0.28 8.06 -2.91 -0.02 0.25 16 34 H 0.21 0.73 8.06 -2.91 -0.02 0.71 16 35 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.10 2.49 7.67 -2.39 -0.02 2.47 16 38 H 0.13 2.41 7.51 -2.39 -0.02 2.39 16 Total: -1.00 -77.06 328.08 2.97 -74.08 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.56 Total: 17.33 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 5.73 Total: -1.80 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -5.29 Total: -111.21 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.05 Total: -24.66 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -77.06 2.97 -74.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178353057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.659 kcal (2) G-P(sol) polarization free energy of solvation -77.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds