Wall clock time and date at job start Mon Mar 30 2020 02:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00475 * 2 1 4 4 H 1.48501 * 109.47207 * 240.00102 * 3 2 1 5 5 H 1.48504 * 109.46923 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47113 * 120.00072 * 3 2 1 7 7 C 1.37883 * 119.99378 * 180.02562 * 2 1 3 8 8 C 1.51263 * 120.85379 * 359.97438 * 7 2 1 9 9 C 1.53230 * 108.53647 * 128.63222 * 8 7 2 10 10 C 1.52959 * 109.40489 * 54.63166 * 9 8 7 11 11 H 1.08996 * 109.41532 * 56.43070 * 10 9 8 12 12 N 1.46496 * 109.41361 * 176.29830 * 10 9 8 13 13 C 1.34774 * 119.99934 * 205.27649 * 12 10 9 14 14 O 1.21587 * 120.00254 * 359.71580 * 13 12 10 15 15 N 1.34775 * 120.00262 * 179.72072 * 13 12 10 16 16 C 1.39974 * 120.00015 * 175.31777 * 15 13 12 17 17 C 1.39275 * 120.48846 * 34.96713 * 16 15 13 18 18 C 1.38502 * 118.36556 * 179.97438 * 17 16 15 19 19 C 1.38277 * 119.23404 * 0.02562 * 18 17 16 20 20 N 1.31853 * 120.91430 * 359.97438 * 19 18 17 21 21 C 1.31817 * 121.79986 * 359.70682 * 20 19 18 22 22 C 1.52961 * 109.81228 * 296.39912 * 10 9 8 23 23 C 1.51272 * 120.84612 * 179.97438 * 7 2 1 24 24 H 0.97003 * 119.99630 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.62619 * 8.91613 * 8 7 2 26 26 H 1.09003 * 109.62689 * 248.34926 * 8 7 2 27 27 H 1.09000 * 109.48321 * 294.64592 * 9 8 7 28 28 H 1.09004 * 109.48172 * 174.60837 * 9 8 7 29 29 H 0.97004 * 120.00597 * 24.99039 * 12 10 9 30 30 H 0.97000 * 119.99910 * 355.32691 * 15 13 12 31 31 H 1.08003 * 120.81460 * 359.97438 * 17 16 15 32 32 H 1.07992 * 120.38392 * 180.02562 * 18 17 16 33 33 H 1.07996 * 119.54224 * 179.97438 * 19 18 17 34 34 H 1.08006 * 119.67247 * 180.31113 * 21 20 19 35 35 H 1.08997 * 109.47982 * 183.57758 * 22 10 9 36 36 H 1.08997 * 109.48321 * 303.61784 * 22 10 9 37 37 H 1.09004 * 109.62784 * 351.07709 * 23 7 2 38 38 H 1.09002 * 109.62720 * 111.46189 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 6 1.2676 -2.5152 -0.0005 9 6 1.8220 -3.3822 -1.1358 10 6 3.3391 -3.5068 -0.9858 11 1 3.5738 -3.9112 -0.0012 12 7 3.8583 -4.4069 -2.0184 13 6 5.0130 -5.0714 -1.8147 14 8 5.6265 -4.9199 -0.7759 15 7 5.4878 -5.9038 -2.7623 16 6 6.7341 -6.5181 -2.5936 17 6 7.1646 -6.9070 -1.3275 18 6 8.4053 -7.5116 -1.2112 19 6 9.1702 -7.7073 -2.3464 20 7 8.7337 -7.3274 -3.5312 21 6 7.5568 -6.7543 -3.6869 22 6 3.9898 -2.1308 -1.1368 23 6 3.5170 -1.2167 -0.0011 24 1 -0.4850 0.8401 -0.0004 25 1 0.2035 -2.3408 -0.1592 26 1 1.4204 -3.0197 0.9536 27 1 1.5883 -2.9190 -2.0944 28 1 1.3697 -4.3729 -1.0908 29 1 3.3689 -4.5279 -2.8472 30 1 4.9658 -6.0771 -3.5614 31 1 6.5462 -6.7412 -0.4577 32 1 8.7711 -7.8265 -0.2452 33 1 10.1385 -8.1779 -2.2615 34 1 7.2313 -6.4613 -4.6741 35 1 5.0739 -2.2345 -1.0924 36 1 3.7048 -1.6972 -2.0954 37 1 3.8982 -0.2079 -0.1603 38 1 3.8779 -1.5979 0.9541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185705312.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:39 Heat of formation + Delta-G solvation = -5.077365 kcal Electronic energy + Delta-G solvation = -20763.908654 eV Core-core repulsion = 17605.674371 eV Total energy + Delta-G solvation = -3158.234283 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88263 -39.46826 -37.10569 -34.96688 -33.88343 -32.23351 -31.65333 -29.92208 -29.63851 -27.13648 -23.99341 -23.50369 -22.16109 -21.54398 -20.65280 -19.62682 -18.53046 -17.59690 -16.98643 -16.24785 -15.93571 -15.21591 -15.07993 -14.48839 -14.19731 -14.12386 -13.85396 -13.27114 -13.10687 -12.82040 -12.37634 -12.24223 -12.12044 -11.68300 -11.10601 -10.99620 -10.78869 -10.73223 -10.36023 -10.15810 -10.03677 -9.81659 -9.77609 -9.47200 -9.08331 -8.95741 -8.55848 -8.50790 -8.26478 -6.14862 -4.05791 0.94864 1.21053 2.60207 3.20042 3.27368 3.33993 3.36151 3.74876 4.18665 4.35820 4.40077 4.73785 4.83752 5.01445 5.13283 5.23019 5.45899 5.61900 5.80363 5.94404 6.08720 6.12823 6.17738 6.39298 6.41600 6.59258 6.64536 6.71187 6.80470 6.85469 6.95280 7.04452 7.19945 7.38948 7.59420 7.66276 7.75279 7.81481 8.02625 8.32928 8.61024 8.91132 9.50273 10.94738 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.038553 B = 0.003598 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.090318 B = 7780.200299 C = 8033.177819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.077 3.923 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.491 4.491 8 C 0.014 3.986 9 C -0.114 4.114 10 C 0.170 3.830 11 H 0.080 0.920 12 N -0.731 5.731 13 C 0.700 3.300 14 O -0.575 6.575 15 N -0.688 5.688 16 C 0.125 3.875 17 C -0.080 4.080 18 C -0.152 4.152 19 C 0.070 3.930 20 N -0.468 5.468 21 C 0.068 3.932 22 C -0.114 4.114 23 C -0.008 4.008 24 H 0.265 0.735 25 H 0.062 0.938 26 H 0.007 0.993 27 H 0.055 0.945 28 H 0.036 0.964 29 H 0.392 0.608 30 H 0.407 0.593 31 H 0.153 0.847 32 H 0.136 0.864 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.037 0.963 36 H 0.051 0.949 37 H 0.025 0.975 38 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.515 -13.501 -6.867 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.510 4.510 8 C -0.024 4.024 9 C -0.153 4.153 10 C 0.068 3.932 11 H 0.098 0.902 12 N -0.383 5.383 13 C 0.400 3.600 14 O -0.451 6.451 15 N -0.336 5.336 16 C 0.027 3.973 17 C -0.108 4.108 18 C -0.172 4.172 19 C -0.088 4.088 20 N -0.176 5.176 21 C -0.093 4.093 22 C -0.153 4.153 23 C -0.046 4.046 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.025 0.975 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.226 0.774 30 H 0.243 0.757 31 H 0.170 0.830 32 H 0.154 0.846 33 H 0.172 0.828 34 H 0.172 0.828 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 11.337 -13.291 -6.616 18.680 hybrid contribution -0.584 1.026 -0.155 1.191 sum 10.753 -12.265 -6.771 17.660 Atomic orbital electron populations 1.69819 1.06141 1.27139 1.49656 1.24833 0.94733 0.98586 0.94421 0.86647 0.79387 0.82916 0.79083 1.20014 1.21846 1.19938 1.20036 0.89319 0.91504 1.50183 1.19334 0.98743 0.92726 0.91615 1.21955 0.92104 0.98697 1.02503 1.21017 0.94256 0.88376 0.89583 0.90200 1.45693 1.22975 1.47258 1.22374 1.16044 0.81929 0.78663 0.83375 1.90914 1.59309 1.68642 1.26268 1.42643 1.19097 1.47721 1.24182 1.18618 0.86838 0.96400 0.95479 1.21872 0.96932 0.94206 0.97804 1.22112 0.94990 0.99744 1.00396 1.22661 0.99979 0.98450 0.87716 1.67610 1.13524 1.09952 1.26560 1.22546 0.89525 0.99065 0.98130 1.21928 0.97393 0.95197 1.00818 1.19596 0.96565 0.94567 0.93916 0.92476 0.91982 0.97474 0.92639 0.94527 0.77444 0.75716 0.82967 0.84574 0.82817 0.82780 0.94397 0.93021 0.95628 0.96069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.05 12.73 55.43 0.71 -24.34 16 2 C 0.08 2.07 5.46 -17.82 -0.10 1.98 16 3 Si 0.89 21.14 26.80 -169.99 -4.56 16.58 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.49 -12.66 5.51 -98.92 -0.55 -13.20 16 8 C 0.01 0.33 5.97 -27.49 -0.16 0.16 16 9 C -0.11 -2.21 5.40 -26.63 -0.14 -2.35 16 10 C 0.17 3.19 2.35 -67.97 -0.16 3.03 16 11 H 0.08 1.66 7.57 -51.93 -0.39 1.27 16 12 N -0.73 -10.73 5.08 -58.72 -0.30 -11.03 16 13 C 0.70 10.71 8.39 -86.92 -0.73 9.98 16 14 O -0.57 -11.01 13.48 5.29 0.07 -10.94 16 15 N -0.69 -7.80 5.36 -14.12 -0.08 -7.88 16 16 C 0.12 1.51 6.32 -83.53 -0.53 0.99 16 17 C -0.08 -1.02 8.81 -39.10 -0.34 -1.36 16 18 C -0.15 -1.58 10.10 -39.47 -0.40 -1.98 16 19 C 0.07 0.72 11.18 -17.53 -0.20 0.52 16 20 N -0.47 -5.55 10.35 -13.09 -0.14 -5.68 16 21 C 0.07 0.74 11.12 -17.33 -0.19 0.55 16 22 C -0.11 -2.35 5.51 -26.62 -0.15 -2.50 16 23 C -0.01 -0.19 5.59 -27.47 -0.15 -0.35 16 24 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.06 1.61 7.07 -51.93 -0.37 1.25 16 26 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.39 4.48 8.62 -40.82 -0.35 4.13 16 30 H 0.41 3.11 8.84 -40.82 -0.36 2.74 16 31 H 0.15 2.19 6.32 -52.48 -0.33 1.85 16 32 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.03 0.59 5.17 -51.93 -0.27 0.33 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 311.76 15.07 4.70 4.70 Total: -1.00 -31.07 311.76 -8.40 -39.47 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.01 Total: 3.67 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -3.80 Total: -4.55 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.20 Total: -48.93 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.07 Total: -10.94 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.56 Total: 16.58 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.07 -8.40 -39.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185705312.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.394 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds