Wall clock time and date at job start Mon Mar 30 2020 02:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00475 * 2 1 4 4 H 1.48501 * 109.47207 * 240.00102 * 3 2 1 5 5 H 1.48504 * 109.46923 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47113 * 120.00072 * 3 2 1 7 7 C 1.37883 * 119.99378 * 180.02562 * 2 1 3 8 8 C 1.51263 * 120.85379 * 359.97438 * 7 2 1 9 9 C 1.53230 * 108.53647 * 128.63222 * 8 7 2 10 10 C 1.52959 * 109.40489 * 54.63166 * 9 8 7 11 11 H 1.08996 * 109.41532 * 56.43070 * 10 9 8 12 12 N 1.46496 * 109.41361 * 176.29830 * 10 9 8 13 13 C 1.34774 * 119.99934 * 205.27649 * 12 10 9 14 14 O 1.21587 * 120.00254 * 359.71580 * 13 12 10 15 15 N 1.34775 * 120.00262 * 179.72072 * 13 12 10 16 16 C 1.39974 * 120.00015 * 175.31777 * 15 13 12 17 17 C 1.39275 * 120.48846 * 34.96713 * 16 15 13 18 18 C 1.38502 * 118.36556 * 179.97438 * 17 16 15 19 19 C 1.38277 * 119.23404 * 0.02562 * 18 17 16 20 20 N 1.31853 * 120.91430 * 359.97438 * 19 18 17 21 21 C 1.31817 * 121.79986 * 359.70682 * 20 19 18 22 22 C 1.52961 * 109.81228 * 296.39912 * 10 9 8 23 23 C 1.51272 * 120.84612 * 179.97438 * 7 2 1 24 24 H 0.97003 * 119.99630 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.62619 * 8.91613 * 8 7 2 26 26 H 1.09003 * 109.62689 * 248.34926 * 8 7 2 27 27 H 1.09000 * 109.48321 * 294.64592 * 9 8 7 28 28 H 1.09004 * 109.48172 * 174.60837 * 9 8 7 29 29 H 0.97004 * 120.00597 * 24.99039 * 12 10 9 30 30 H 0.97000 * 119.99910 * 355.32691 * 15 13 12 31 31 H 1.08003 * 120.81460 * 359.97438 * 17 16 15 32 32 H 1.07992 * 120.38392 * 180.02562 * 18 17 16 33 33 H 1.07996 * 119.54224 * 179.97438 * 19 18 17 34 34 H 1.08006 * 119.67247 * 180.31113 * 21 20 19 35 35 H 1.08997 * 109.47982 * 183.57758 * 22 10 9 36 36 H 1.08997 * 109.48321 * 303.61784 * 22 10 9 37 37 H 1.09004 * 109.62784 * 351.07709 * 23 7 2 38 38 H 1.09002 * 109.62720 * 111.46189 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 6 1.2676 -2.5152 -0.0005 9 6 1.8220 -3.3822 -1.1358 10 6 3.3391 -3.5068 -0.9858 11 1 3.5738 -3.9112 -0.0012 12 7 3.8583 -4.4069 -2.0184 13 6 5.0130 -5.0714 -1.8147 14 8 5.6265 -4.9199 -0.7759 15 7 5.4878 -5.9038 -2.7623 16 6 6.7341 -6.5181 -2.5936 17 6 7.1646 -6.9070 -1.3275 18 6 8.4053 -7.5116 -1.2112 19 6 9.1702 -7.7073 -2.3464 20 7 8.7337 -7.3274 -3.5312 21 6 7.5568 -6.7543 -3.6869 22 6 3.9898 -2.1308 -1.1368 23 6 3.5170 -1.2167 -0.0011 24 1 -0.4850 0.8401 -0.0004 25 1 0.2035 -2.3408 -0.1592 26 1 1.4204 -3.0197 0.9536 27 1 1.5883 -2.9190 -2.0944 28 1 1.3697 -4.3729 -1.0908 29 1 3.3689 -4.5279 -2.8472 30 1 4.9658 -6.0771 -3.5614 31 1 6.5462 -6.7412 -0.4577 32 1 8.7711 -7.8265 -0.2452 33 1 10.1385 -8.1779 -2.2615 34 1 7.2313 -6.4613 -4.6741 35 1 5.0739 -2.2345 -1.0924 36 1 3.7048 -1.6972 -2.0954 37 1 3.8982 -0.2079 -0.1603 38 1 3.8779 -1.5979 0.9541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185705312.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:39 Heat of formation + Delta-G solvation = -26.265578 kcal Electronic energy + Delta-G solvation = -20764.827444 eV Core-core repulsion = 17605.674371 eV Total energy + Delta-G solvation = -3159.153073 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.91492 -40.53806 -38.66329 -36.08316 -35.46548 -33.54395 -32.95726 -31.51521 -30.86147 -28.80438 -25.03051 -24.52683 -23.66359 -23.28363 -21.88512 -21.28254 -19.67694 -18.69055 -17.90250 -17.83012 -17.06152 -16.52799 -16.43830 -16.22083 -15.54759 -14.96314 -14.90870 -14.79500 -14.54513 -14.20909 -14.02149 -13.95045 -13.47206 -13.06429 -12.78219 -12.68373 -12.55015 -12.01426 -11.96265 -11.84333 -11.60672 -11.45062 -10.91770 -10.72070 -10.66678 -10.55760 -10.35868 -10.00473 -9.25184 -8.18665 -6.12304 0.11091 0.32122 1.38266 1.40781 1.47708 1.51004 2.03597 2.39881 2.89945 3.04888 3.18872 3.64993 3.92013 3.99831 4.04491 4.16368 4.20010 4.39697 4.49195 4.70357 4.71825 4.83202 4.94906 5.06124 5.07176 5.10991 5.19365 5.22479 5.24815 5.30050 5.54304 5.57504 5.66726 5.74501 5.80636 5.83434 5.95626 6.33928 6.93129 6.98288 6.99046 7.45220 7.46492 8.91894 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.038553 B = 0.003598 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.090318 B = 7780.200299 C = 8033.177819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.028 3.972 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.501 4.501 8 C 0.009 3.991 9 C -0.100 4.100 10 C 0.185 3.815 11 H 0.058 0.942 12 N -0.719 5.719 13 C 0.699 3.301 14 O -0.615 6.615 15 N -0.668 5.668 16 C 0.107 3.893 17 C -0.102 4.102 18 C -0.151 4.151 19 C 0.071 3.929 20 N -0.487 5.487 21 C 0.072 3.928 22 C -0.106 4.106 23 C -0.012 4.012 24 H 0.264 0.736 25 H 0.035 0.965 26 H -0.002 1.002 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.412 0.588 30 H 0.427 0.573 31 H 0.131 0.869 32 H 0.159 0.841 33 H 0.185 0.815 34 H 0.181 0.819 35 H 0.038 0.962 36 H 0.056 0.944 37 H 0.025 0.975 38 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.213 -14.571 -8.540 20.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.171 4.171 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.218 1.218 6 H -0.198 1.198 7 C -0.520 4.520 8 C -0.029 4.029 9 C -0.138 4.138 10 C 0.080 3.920 11 H 0.077 0.923 12 N -0.373 5.373 13 C 0.400 3.600 14 O -0.495 6.495 15 N -0.318 5.318 16 C 0.009 3.991 17 C -0.130 4.130 18 C -0.171 4.171 19 C -0.086 4.086 20 N -0.195 5.195 21 C -0.088 4.088 22 C -0.145 4.145 23 C -0.050 4.050 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.017 0.983 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.249 0.751 30 H 0.266 0.734 31 H 0.149 0.851 32 H 0.177 0.823 33 H 0.202 0.798 34 H 0.198 0.802 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 13.043 -14.399 -8.352 21.148 hybrid contribution -1.047 1.251 0.409 1.682 sum 11.996 -13.148 -7.942 19.490 Atomic orbital electron populations 1.69934 1.07392 1.27582 1.51714 1.25509 0.95325 1.01422 0.94827 0.85876 0.78415 0.79860 0.79327 1.19038 1.21830 1.19765 1.20590 0.90717 0.92152 1.48551 1.19298 0.97362 0.93201 0.93080 1.21705 0.92487 0.99085 1.00539 1.20532 0.93588 0.88027 0.89804 0.92340 1.45217 1.23156 1.46559 1.22335 1.16119 0.81601 0.78888 0.83405 1.90901 1.60434 1.69952 1.28203 1.42299 1.19059 1.46460 1.23942 1.18758 0.87274 0.97272 0.95764 1.21892 0.97944 0.95596 0.97567 1.22364 0.94047 0.98923 1.01767 1.23185 1.00898 0.97440 0.87079 1.67696 1.13904 1.10576 1.27348 1.22905 0.88973 0.98074 0.98798 1.21797 0.97432 0.95649 0.99653 1.19611 0.95129 0.95366 0.94864 0.92675 0.94614 0.98327 0.92205 0.91977 0.75137 0.73405 0.85148 0.82311 0.79828 0.80206 0.94329 0.92535 0.95649 0.96703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.14 12.73 21.45 0.27 -52.87 16 2 C 0.03 1.52 5.46 84.66 0.46 1.98 16 3 Si 0.94 43.33 26.80 68.60 1.84 45.17 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.50 -25.91 5.51 -16.17 -0.09 -26.00 16 8 C 0.01 0.41 5.97 30.10 0.18 0.59 16 9 C -0.10 -3.73 5.40 30.66 0.17 -3.57 16 10 C 0.19 6.69 2.35 44.97 0.11 6.80 16 11 H 0.06 2.41 7.57 -2.39 -0.02 2.39 16 12 N -0.72 -19.58 5.08 -457.96 -2.33 -21.90 16 13 C 0.70 20.35 8.39 179.06 1.50 21.85 16 14 O -0.62 -23.35 13.48 -3.99 -0.05 -23.41 16 15 N -0.67 -13.74 5.36 -316.86 -1.70 -15.44 16 16 C 0.11 2.41 6.32 38.24 0.24 2.66 16 17 C -0.10 -2.51 8.81 22.58 0.20 -2.31 16 18 C -0.15 -2.88 10.10 22.34 0.23 -2.65 16 19 C 0.07 1.28 11.18 84.70 0.95 2.22 16 20 N -0.49 -10.29 10.35 -195.32 -2.02 -12.31 16 21 C 0.07 1.41 11.12 84.84 0.94 2.35 16 22 C -0.11 -4.24 5.51 30.67 0.17 -4.07 16 23 C -0.01 -0.53 5.59 30.12 0.17 -0.37 16 24 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 25 H 0.04 1.89 7.07 -2.39 -0.02 1.87 16 26 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.41 8.11 8.62 -92.71 -0.80 7.31 16 30 H 0.43 5.23 8.84 -92.71 -0.82 4.41 16 31 H 0.13 3.81 6.32 -2.91 -0.02 3.79 16 32 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 33 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 34 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.03 1.15 5.17 -2.38 -0.01 1.14 16 38 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -67.78 311.76 0.71 -67.06 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -0.52 Total: 14.21 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 5.22 Total: -0.51 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -5.77 Total: -102.53 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.05 Total: -23.41 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.84 Total: 45.17 kcal Total: -67.78 0.71 -67.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185705312.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.799 kcal (2) G-P(sol) polarization free energy of solvation -67.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds