Wall clock time and date at job start Mon Mar 30 2020 02:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00137 * 2 1 4 4 H 1.48493 * 109.47462 * 270.00499 * 3 2 1 5 5 H 1.48502 * 109.47055 * 30.00590 * 3 2 1 6 6 H 1.48500 * 109.47258 * 149.99876 * 3 2 1 7 7 C 1.37875 * 119.99775 * 180.02562 * 2 1 3 8 8 C 1.51270 * 120.85507 * 359.97438 * 7 2 1 9 9 C 1.53231 * 108.53804 * 231.33183 * 8 7 2 10 10 C 1.52959 * 109.40062 * 305.36816 * 9 8 7 11 11 H 1.08996 * 109.41587 * 303.56397 * 10 9 8 12 12 N 1.46499 * 109.41128 * 183.70765 * 10 9 8 13 13 C 1.34773 * 120.00237 * 154.85911 * 12 10 9 14 14 O 1.21587 * 119.99709 * 359.97438 * 13 12 10 15 15 N 1.34776 * 120.00193 * 179.97438 * 13 12 10 16 16 C 1.39973 * 119.99934 * 184.39379 * 15 13 12 17 17 C 1.39276 * 120.48984 * 325.05119 * 16 15 13 18 18 C 1.38498 * 118.36337 * 180.02562 * 17 16 15 19 19 C 1.38275 * 119.23738 * 359.97438 * 18 17 16 20 20 N 1.31856 * 120.91427 * 0.02562 * 19 18 17 21 21 C 1.31819 * 121.79721 * 359.66041 * 20 19 18 22 22 C 1.52955 * 109.76216 * 63.63703 * 10 9 8 23 23 C 1.51279 * 120.84823 * 179.97438 * 7 2 1 24 24 H 0.96996 * 119.99726 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.62944 * 111.60741 * 8 7 2 26 26 H 1.09000 * 109.62054 * 351.04206 * 8 7 2 27 27 H 1.08998 * 109.48104 * 185.38909 * 9 8 7 28 28 H 1.09001 * 109.48251 * 65.34565 * 9 8 7 29 29 H 0.97005 * 120.00283 * 334.85373 * 12 10 9 30 30 H 0.96994 * 120.00078 * 4.67762 * 15 13 12 31 31 H 1.08003 * 120.81813 * 359.97438 * 17 16 15 32 32 H 1.08000 * 120.38575 * 180.02562 * 18 17 16 33 33 H 1.07995 * 119.54297 * 180.02562 * 19 18 17 34 34 H 1.07993 * 119.67112 * 180.33336 * 21 20 19 35 35 H 1.09003 * 109.48615 * 56.34127 * 22 10 9 36 36 H 1.09002 * 109.48419 * 176.38794 * 22 10 9 37 37 H 1.08998 * 109.62160 * 248.38419 * 23 7 2 38 38 H 1.08994 * 109.62506 * 8.95121 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 6 1.2677 -2.5152 -0.0005 9 6 1.8237 -3.3831 1.1334 10 6 3.3406 -3.5074 0.9811 11 1 3.5739 -3.9111 -0.0041 12 7 3.8612 -4.4084 2.0123 13 6 5.0171 -5.0705 1.8076 14 8 5.6275 -4.9204 0.7669 15 7 5.4963 -5.8990 2.7565 16 6 6.7411 -6.5153 2.5838 17 6 7.1643 -6.9102 1.3170 18 6 8.4037 -7.5166 1.1968 19 6 9.1745 -7.7082 2.3286 20 7 8.7448 -7.3227 3.5141 21 6 7.5747 -6.7366 3.6719 22 6 3.9902 -2.1310 1.1334 23 6 3.5171 -1.2165 -0.0011 24 1 -0.4849 0.8400 0.0004 25 1 1.4192 -3.0189 -0.9552 26 1 0.2037 -2.3409 0.1598 27 1 1.3713 -4.3737 1.0882 28 1 1.5913 -2.9205 2.0926 29 1 3.3740 -4.5283 2.8425 30 1 4.9768 -6.0713 3.5573 31 1 6.5411 -6.7484 0.4499 32 1 8.7644 -7.8354 0.2300 33 1 10.1419 -8.1801 2.2405 34 1 7.2590 -6.4298 4.6581 35 1 3.7054 -1.6987 2.0927 36 1 5.0744 -2.2337 1.0882 37 1 3.8771 -1.5999 -0.9558 38 1 3.8983 -0.2080 0.1587 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185705321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:42 Heat of formation + Delta-G solvation = -3.164933 kcal Electronic energy + Delta-G solvation = -20766.410883 eV Core-core repulsion = 17608.259530 eV Total energy + Delta-G solvation = -3158.151354 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.87916 -39.46425 -37.10005 -34.96234 -33.87754 -32.23211 -31.64796 -29.91766 -29.63286 -27.13027 -23.98956 -23.50080 -22.15605 -21.53674 -20.64917 -19.61809 -18.52556 -17.59606 -16.98350 -16.25342 -15.94931 -15.21124 -15.07251 -14.48164 -14.19980 -14.12480 -13.84844 -13.26812 -13.10790 -12.80809 -12.39888 -12.27412 -12.14686 -11.69164 -11.08440 -11.00763 -10.80449 -10.75006 -10.34940 -10.12847 -10.01608 -9.79414 -9.60131 -9.46913 -9.08102 -8.94086 -8.55987 -8.48506 -8.24639 -6.14074 -4.05078 0.94961 1.21051 2.60827 3.20459 3.26013 3.34229 3.35519 3.74996 4.19126 4.35773 4.40378 4.74000 4.84007 5.01463 5.13671 5.23154 5.46131 5.62725 5.82070 5.94650 6.08995 6.13389 6.18081 6.40573 6.42908 6.59815 6.66164 6.71471 6.81237 6.87771 6.96554 7.09773 7.21767 7.40614 7.60830 7.66927 7.75787 7.81555 8.03191 8.33796 8.61608 8.92120 9.50902 10.95352 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.038539 B = 0.003599 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.355351 B = 7778.782634 C = 8031.213378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.489 4.489 8 C 0.013 3.987 9 C -0.114 4.114 10 C 0.170 3.830 11 H 0.080 0.920 12 N -0.731 5.731 13 C 0.699 3.301 14 O -0.575 6.575 15 N -0.688 5.688 16 C 0.125 3.875 17 C -0.079 4.079 18 C -0.152 4.152 19 C 0.070 3.930 20 N -0.468 5.468 21 C 0.068 3.932 22 C -0.113 4.113 23 C -0.019 4.019 24 H 0.264 0.736 25 H 0.007 0.993 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.055 0.945 29 H 0.392 0.608 30 H 0.407 0.593 31 H 0.153 0.847 32 H 0.136 0.864 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.050 0.950 36 H 0.036 0.964 37 H 0.019 0.981 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.594 -13.368 6.864 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.508 4.508 8 C -0.025 4.025 9 C -0.152 4.152 10 C 0.067 3.933 11 H 0.098 0.902 12 N -0.383 5.383 13 C 0.400 3.600 14 O -0.451 6.451 15 N -0.337 5.337 16 C 0.026 3.974 17 C -0.108 4.108 18 C -0.173 4.173 19 C -0.088 4.088 20 N -0.177 5.177 21 C -0.092 4.092 22 C -0.152 4.152 23 C -0.057 4.057 24 H 0.074 0.926 25 H 0.025 0.975 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.225 0.775 30 H 0.243 0.757 31 H 0.170 0.830 32 H 0.154 0.846 33 H 0.172 0.828 34 H 0.172 0.828 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.038 0.962 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.416 -13.163 6.611 18.636 hybrid contribution -0.623 0.993 0.139 1.181 sum 10.793 -12.170 6.750 17.611 Atomic orbital electron populations 1.69830 1.06140 1.26986 1.49883 1.24842 0.94718 0.98609 0.94475 0.86675 0.79980 0.83204 0.78601 1.20348 1.21658 1.18951 1.20057 0.89399 0.91449 1.49875 1.19341 0.98733 0.92767 0.91629 1.21952 0.92132 0.98678 1.02477 1.21029 0.94238 0.88393 0.89600 0.90221 1.45700 1.22933 1.47358 1.22314 1.16046 0.81899 0.78677 0.83395 1.90914 1.59523 1.68573 1.26139 1.42642 1.19207 1.47879 1.23941 1.18618 0.86833 0.96399 0.95513 1.21869 0.96983 0.94153 0.97760 1.22111 0.94961 0.99776 1.00425 1.22664 0.99909 0.98476 0.87717 1.67615 1.13893 1.09780 1.26392 1.22555 0.89493 0.98918 0.98247 1.21909 0.97333 0.95141 1.00852 1.19791 0.96558 0.95518 0.93836 0.92565 0.97485 0.92009 0.94554 0.92656 0.77461 0.75717 0.82988 0.84576 0.82815 0.82780 0.93087 0.94485 0.96212 0.94602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.07 12.73 55.43 0.71 -24.36 16 2 C 0.08 2.04 5.46 -17.82 -0.10 1.95 16 3 Si 0.89 20.87 27.53 -169.99 -4.68 16.19 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -6.05 6.11 56.52 0.35 -5.70 16 7 C -0.49 -12.58 5.51 -98.92 -0.55 -13.12 16 8 C 0.01 0.32 5.97 -27.48 -0.16 0.15 16 9 C -0.11 -2.21 5.40 -26.63 -0.14 -2.36 16 10 C 0.17 3.20 2.35 -67.98 -0.16 3.04 16 11 H 0.08 1.66 7.57 -51.93 -0.39 1.27 16 12 N -0.73 -10.78 5.08 -58.72 -0.30 -11.08 16 13 C 0.70 10.75 8.38 -86.92 -0.73 10.02 16 14 O -0.57 -11.05 13.49 5.29 0.07 -10.98 16 15 N -0.69 -7.84 5.36 -14.12 -0.08 -7.91 16 16 C 0.12 1.51 6.32 -83.53 -0.53 0.99 16 17 C -0.08 -1.01 8.81 -39.10 -0.34 -1.36 16 18 C -0.15 -1.59 10.10 -39.47 -0.40 -1.99 16 19 C 0.07 0.72 11.18 -17.53 -0.20 0.52 16 20 N -0.47 -5.56 10.35 -13.09 -0.14 -5.69 16 21 C 0.07 0.75 11.12 -17.33 -0.19 0.56 16 22 C -0.11 -2.34 5.50 -26.65 -0.15 -2.49 16 23 C -0.02 -0.44 5.59 -27.49 -0.15 -0.60 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.39 4.50 8.62 -40.82 -0.35 4.15 16 30 H 0.41 3.13 8.84 -40.82 -0.36 2.76 16 31 H 0.15 2.19 6.33 -52.48 -0.33 1.86 16 32 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.04 0.84 4.59 -51.93 -0.24 0.60 16 LS Contribution 310.92 15.07 4.69 4.69 Total: -1.00 -31.08 310.92 -8.57 -39.64 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.04 Total: 4.20 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -3.80 Total: -4.69 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 0.20 Total: -49.04 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.07 Total: -10.98 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.68 Total: 16.19 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.08 -8.57 -39.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185705321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.478 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds