Wall clock time and date at job start Mon Mar 30 2020 02:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00137 * 2 1 4 4 H 1.48493 * 109.47462 * 270.00499 * 3 2 1 5 5 H 1.48502 * 109.47055 * 30.00590 * 3 2 1 6 6 H 1.48500 * 109.47258 * 149.99876 * 3 2 1 7 7 C 1.37875 * 119.99775 * 180.02562 * 2 1 3 8 8 C 1.51270 * 120.85507 * 359.97438 * 7 2 1 9 9 C 1.53231 * 108.53804 * 231.33183 * 8 7 2 10 10 C 1.52959 * 109.40062 * 305.36816 * 9 8 7 11 11 H 1.08996 * 109.41587 * 303.56397 * 10 9 8 12 12 N 1.46499 * 109.41128 * 183.70765 * 10 9 8 13 13 C 1.34773 * 120.00237 * 154.85911 * 12 10 9 14 14 O 1.21587 * 119.99709 * 359.97438 * 13 12 10 15 15 N 1.34776 * 120.00193 * 179.97438 * 13 12 10 16 16 C 1.39973 * 119.99934 * 184.39379 * 15 13 12 17 17 C 1.39276 * 120.48984 * 325.05119 * 16 15 13 18 18 C 1.38498 * 118.36337 * 180.02562 * 17 16 15 19 19 C 1.38275 * 119.23738 * 359.97438 * 18 17 16 20 20 N 1.31856 * 120.91427 * 0.02562 * 19 18 17 21 21 C 1.31819 * 121.79721 * 359.66041 * 20 19 18 22 22 C 1.52955 * 109.76216 * 63.63703 * 10 9 8 23 23 C 1.51279 * 120.84823 * 179.97438 * 7 2 1 24 24 H 0.96996 * 119.99726 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.62944 * 111.60741 * 8 7 2 26 26 H 1.09000 * 109.62054 * 351.04206 * 8 7 2 27 27 H 1.08998 * 109.48104 * 185.38909 * 9 8 7 28 28 H 1.09001 * 109.48251 * 65.34565 * 9 8 7 29 29 H 0.97005 * 120.00283 * 334.85373 * 12 10 9 30 30 H 0.96994 * 120.00078 * 4.67762 * 15 13 12 31 31 H 1.08003 * 120.81813 * 359.97438 * 17 16 15 32 32 H 1.08000 * 120.38575 * 180.02562 * 18 17 16 33 33 H 1.07995 * 119.54297 * 180.02562 * 19 18 17 34 34 H 1.07993 * 119.67112 * 180.33336 * 21 20 19 35 35 H 1.09003 * 109.48615 * 56.34127 * 22 10 9 36 36 H 1.09002 * 109.48419 * 176.38794 * 22 10 9 37 37 H 1.08998 * 109.62160 * 248.38419 * 23 7 2 38 38 H 1.08994 * 109.62506 * 8.95121 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 6 1.2677 -2.5152 -0.0005 9 6 1.8237 -3.3831 1.1334 10 6 3.3406 -3.5074 0.9811 11 1 3.5739 -3.9111 -0.0041 12 7 3.8612 -4.4084 2.0123 13 6 5.0171 -5.0705 1.8076 14 8 5.6275 -4.9204 0.7669 15 7 5.4963 -5.8990 2.7565 16 6 6.7411 -6.5153 2.5838 17 6 7.1643 -6.9102 1.3170 18 6 8.4037 -7.5166 1.1968 19 6 9.1745 -7.7082 2.3286 20 7 8.7448 -7.3227 3.5141 21 6 7.5747 -6.7366 3.6719 22 6 3.9902 -2.1310 1.1334 23 6 3.5171 -1.2165 -0.0011 24 1 -0.4849 0.8400 0.0004 25 1 1.4192 -3.0189 -0.9552 26 1 0.2037 -2.3409 0.1598 27 1 1.3713 -4.3737 1.0882 28 1 1.5913 -2.9205 2.0926 29 1 3.3740 -4.5283 2.8425 30 1 4.9768 -6.0713 3.5573 31 1 6.5411 -6.7484 0.4499 32 1 8.7644 -7.8354 0.2300 33 1 10.1419 -8.1801 2.2405 34 1 7.2590 -6.4298 4.6581 35 1 3.7054 -1.6987 2.0927 36 1 5.0744 -2.2337 1.0882 37 1 3.8771 -1.5999 -0.9558 38 1 3.8983 -0.2080 0.1587 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185705321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:42 Heat of formation + Delta-G solvation = -24.261722 kcal Electronic energy + Delta-G solvation = -20767.325709 eV Core-core repulsion = 17608.259530 eV Total energy + Delta-G solvation = -3159.066179 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.91489 -40.53792 -38.66154 -36.08232 -35.46172 -33.53874 -32.95790 -31.51322 -30.86042 -28.80084 -25.02831 -24.52570 -23.66274 -23.27806 -21.88633 -21.27782 -19.67734 -18.69536 -17.91157 -17.82901 -17.07177 -16.53401 -16.42433 -16.21485 -15.55157 -14.96815 -14.91213 -14.78958 -14.54048 -14.24696 -14.02872 -13.97151 -13.47841 -13.06367 -12.79135 -12.69479 -12.56600 -11.97542 -11.92681 -11.84381 -11.47989 -11.38473 -10.90814 -10.71151 -10.65536 -10.55181 -10.36658 -9.98451 -9.25547 -8.17321 -6.11466 0.10936 0.31920 1.38623 1.42223 1.49497 1.50804 2.03569 2.40917 2.89816 3.05374 3.19393 3.64937 3.92014 3.99904 4.04746 4.16609 4.21137 4.39605 4.49626 4.71292 4.71895 4.84376 4.96847 5.06632 5.07914 5.11086 5.22596 5.23717 5.25389 5.30115 5.55583 5.58070 5.67392 5.75102 5.80832 5.83381 5.95710 6.34943 6.94162 6.98353 6.98908 7.45539 7.47180 8.93071 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.038539 B = 0.003599 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.355351 B = 7778.782634 C = 8031.213378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.026 3.974 3 Si 0.936 3.064 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.252 1.252 7 C -0.498 4.498 8 C 0.008 3.992 9 C -0.099 4.099 10 C 0.185 3.815 11 H 0.058 0.942 12 N -0.719 5.719 13 C 0.699 3.301 14 O -0.616 6.616 15 N -0.668 5.668 16 C 0.107 3.893 17 C -0.101 4.101 18 C -0.151 4.151 19 C 0.072 3.928 20 N -0.487 5.487 21 C 0.073 3.927 22 C -0.106 4.106 23 C -0.021 4.021 24 H 0.263 0.737 25 H -0.002 1.002 26 H 0.035 0.965 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.412 0.588 30 H 0.427 0.573 31 H 0.130 0.870 32 H 0.159 0.841 33 H 0.185 0.815 34 H 0.181 0.819 35 H 0.056 0.944 36 H 0.037 0.963 37 H 0.013 0.987 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.348 -14.402 8.534 20.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.173 4.173 3 Si 0.763 3.237 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.177 1.177 7 C -0.517 4.517 8 C -0.030 4.030 9 C -0.138 4.138 10 C 0.080 3.920 11 H 0.076 0.924 12 N -0.373 5.373 13 C 0.400 3.600 14 O -0.495 6.495 15 N -0.318 5.318 16 C 0.009 3.991 17 C -0.130 4.130 18 C -0.171 4.171 19 C -0.086 4.086 20 N -0.195 5.195 21 C -0.087 4.087 22 C -0.145 4.145 23 C -0.059 4.059 24 H 0.073 0.927 25 H 0.016 0.984 26 H 0.053 0.947 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.248 0.752 30 H 0.266 0.734 31 H 0.148 0.852 32 H 0.177 0.823 33 H 0.202 0.798 34 H 0.198 0.802 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.032 0.968 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 13.179 -14.238 8.343 21.119 hybrid contribution -1.107 1.205 -0.426 1.691 sum 12.072 -13.033 7.918 19.449 Atomic orbital electron populations 1.69948 1.07459 1.27488 1.51911 1.25539 0.95330 1.01557 0.94835 0.85874 0.79370 0.79926 0.78534 1.20387 1.21620 1.17675 1.20600 0.90778 0.92071 1.48300 1.19306 0.97354 0.93295 0.93054 1.21702 0.92511 0.99046 1.00535 1.20540 0.93572 0.88058 0.89795 0.92406 1.45223 1.23113 1.46659 1.22284 1.16122 0.81574 0.78899 0.83424 1.90901 1.60646 1.69889 1.28079 1.42299 1.19163 1.46623 1.23697 1.18757 0.87269 0.97267 0.95800 1.21890 0.97990 0.95551 0.97525 1.22365 0.94011 0.98948 1.01800 1.23189 1.00826 0.97464 0.87073 1.67701 1.14262 1.10396 1.27182 1.22911 0.88934 0.97965 0.98905 1.21781 0.97333 0.95607 0.99747 1.19793 0.95111 0.96271 0.94756 0.92739 0.98392 0.94669 0.92045 0.92203 0.75151 0.73408 0.85174 0.82304 0.79812 0.80225 0.92558 0.94471 0.96837 0.94667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.28 12.73 21.45 0.27 -53.00 16 2 C 0.03 1.40 5.46 84.65 0.46 1.86 16 3 Si 0.94 42.81 27.53 68.60 1.89 44.70 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.25 -10.93 6.11 99.48 0.61 -10.32 16 7 C -0.50 -25.75 5.51 -16.17 -0.09 -25.84 16 8 C 0.01 0.38 5.97 30.11 0.18 0.56 16 9 C -0.10 -3.74 5.40 30.66 0.17 -3.58 16 10 C 0.19 6.72 2.35 44.96 0.11 6.82 16 11 H 0.06 2.40 7.57 -2.39 -0.02 2.38 16 12 N -0.72 -19.69 5.08 -457.96 -2.32 -22.02 16 13 C 0.70 20.45 8.38 179.06 1.50 21.95 16 14 O -0.62 -23.46 13.49 -3.99 -0.05 -23.51 16 15 N -0.67 -13.82 5.36 -316.86 -1.70 -15.51 16 16 C 0.11 2.42 6.32 38.24 0.24 2.66 16 17 C -0.10 -2.50 8.81 22.58 0.20 -2.31 16 18 C -0.15 -2.89 10.10 22.34 0.23 -2.66 16 19 C 0.07 1.29 11.18 84.70 0.95 2.23 16 20 N -0.49 -10.31 10.35 -195.33 -2.02 -12.33 16 21 C 0.07 1.42 11.12 84.84 0.94 2.37 16 22 C -0.11 -4.23 5.50 30.65 0.17 -4.06 16 23 C -0.02 -0.98 5.59 30.10 0.17 -0.81 16 24 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 25 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 26 H 0.03 1.87 7.07 -2.39 -0.02 1.85 16 27 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.41 8.17 8.62 -92.70 -0.80 7.37 16 30 H 0.43 5.28 8.84 -92.71 -0.82 4.46 16 31 H 0.13 3.81 6.33 -2.91 -0.02 3.79 16 32 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 34 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.03 1.61 4.59 -2.39 -0.01 1.60 16 Total: -1.00 -67.88 310.92 0.66 -67.22 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -0.62 Total: 15.26 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 5.22 Total: -0.80 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -5.77 Total: -102.86 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.89 Total: 44.70 kcal Total: -67.88 0.66 -67.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185705321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.954 kcal (2) G-P(sol) polarization free energy of solvation -67.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds