Wall clock time and date at job start Mon Mar 30 2020 02:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99814 * 2 1 4 4 H 1.48499 * 109.46935 * 269.99719 * 3 2 1 5 5 H 1.48497 * 109.47160 * 29.99494 * 3 2 1 6 6 H 1.48501 * 109.46993 * 149.99865 * 3 2 1 7 7 C 1.37872 * 120.00064 * 179.97438 * 2 1 3 8 8 C 1.51272 * 120.85265 * 0.02562 * 7 2 1 9 9 C 1.53231 * 108.53505 * 128.62773 * 8 7 2 10 10 C 1.52952 * 109.40425 * 54.63193 * 9 8 7 11 11 H 1.09005 * 109.41793 * 56.43680 * 10 9 8 12 12 N 1.46503 * 109.41489 * 176.29268 * 10 9 8 13 13 C 1.34779 * 120.00351 * 204.99583 * 12 10 9 14 14 O 1.21583 * 119.99570 * 0.02562 * 13 12 10 15 15 N 1.34775 * 120.00405 * 179.97438 * 13 12 10 16 16 C 1.39387 * 119.99968 * 185.09133 * 15 13 12 17 17 C 1.39051 * 119.69184 * 174.93004 * 16 15 13 18 18 C 1.38354 * 119.09771 * 180.02562 * 17 16 15 19 19 C 1.38846 * 118.49931 * 359.97438 * 18 17 16 20 20 C 1.38068 * 119.31082 * 359.97438 * 19 18 17 21 21 N 1.31941 * 120.84657 * 0.27600 * 20 19 18 22 22 C 1.52960 * 109.81875 * 296.40014 * 10 9 8 23 23 C 1.51272 * 120.84933 * 179.97438 * 7 2 1 24 24 H 0.97000 * 120.00432 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.62242 * 8.91882 * 8 7 2 26 26 H 1.09000 * 109.78285 * 248.43715 * 8 7 2 27 27 H 1.08992 * 109.48459 * 294.64787 * 9 8 7 28 28 H 1.09003 * 109.48083 * 174.60873 * 9 8 7 29 29 H 0.96998 * 120.00050 * 25.00095 * 12 10 9 30 30 H 0.96997 * 119.99462 * 5.09487 * 15 13 12 31 31 H 1.07993 * 120.45068 * 359.97438 * 17 16 15 32 32 H 1.08001 * 120.75186 * 179.97438 * 18 17 16 33 33 H 1.07997 * 120.34594 * 179.97438 * 19 18 17 34 34 H 1.07994 * 119.57657 * 180.02562 * 20 19 18 35 35 H 1.09002 * 109.48437 * 183.58081 * 22 10 9 36 36 H 1.09003 * 109.47846 * 303.61697 * 22 10 9 37 37 H 1.08999 * 109.62908 * 351.08999 * 23 7 2 38 38 H 1.09008 * 109.62329 * 111.46419 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 6 1.2678 -2.5152 0.0005 9 6 1.8231 -3.3826 -1.1340 10 6 3.3400 -3.5069 -0.9828 11 1 3.5741 -3.9111 0.0021 12 7 3.8600 -4.4075 -2.0147 13 6 5.0176 -5.0675 -1.8122 14 8 5.6300 -4.9158 -0.7728 15 7 5.4958 -5.8964 -2.7612 16 6 6.6351 -6.6593 -2.5106 17 6 7.0621 -7.5893 -3.4520 18 6 8.1942 -8.3403 -3.1904 19 6 8.8635 -8.1342 -1.9915 20 6 8.3838 -7.1927 -1.1027 21 7 7.2984 -6.4945 -1.3772 22 6 3.9908 -2.1310 -1.1339 23 6 3.5171 -1.2164 0.0000 24 1 -0.4851 0.8400 -0.0004 25 1 0.2037 -2.3409 -0.1591 26 1 1.4169 -3.0208 0.9546 27 1 1.5900 -2.9198 -2.0929 28 1 1.3708 -4.3733 -1.0889 29 1 3.3713 -4.5288 -2.8437 30 1 5.0471 -5.9619 -3.6187 31 1 6.5169 -7.7242 -4.3744 32 1 8.5493 -9.0704 -3.9026 33 1 9.7502 -8.7042 -1.7565 34 1 8.9012 -7.0286 -0.1692 35 1 5.0749 -2.2346 -1.0887 36 1 3.7065 -1.6977 -2.0929 37 1 3.8982 -0.2078 -0.1599 38 1 3.8779 -1.5969 0.9556 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191351502.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:04 Heat of formation + Delta-G solvation = 9.637961 kcal Electronic energy + Delta-G solvation = -20771.886684 eV Core-core repulsion = 17614.290505 eV Total energy + Delta-G solvation = -3157.596179 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76981 -39.26921 -36.92382 -34.70832 -33.68159 -32.45764 -31.58659 -29.93535 -29.59631 -27.09542 -24.03616 -23.42726 -22.06229 -21.46443 -20.46674 -19.52495 -18.45204 -17.78958 -16.29536 -16.05888 -15.65351 -15.42506 -15.06641 -14.41326 -14.26366 -13.92511 -13.78690 -13.18690 -13.12955 -12.70742 -12.26383 -12.14335 -12.04978 -11.67117 -11.03334 -10.89598 -10.72996 -10.64854 -10.23070 -10.01603 -9.95154 -9.94030 -9.59966 -9.09505 -8.94846 -8.83718 -8.45636 -8.41315 -8.16477 -6.09426 -3.99676 1.04166 1.24618 2.60909 3.28811 3.37579 3.39985 3.41279 3.94666 4.14059 4.40503 4.54602 4.70507 4.91760 4.98700 5.11787 5.19269 5.55501 5.69263 5.80286 5.91496 6.03489 6.20359 6.24745 6.49372 6.50858 6.60467 6.74770 6.77678 6.90261 6.95623 7.01850 7.14790 7.30727 7.47885 7.66498 7.73517 7.80201 7.93367 8.30847 8.39653 8.87481 8.97444 9.56114 11.00168 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.041571 B = 0.003597 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.378932 B = 7781.407180 C = 8090.495832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.488 4.488 8 C 0.013 3.987 9 C -0.113 4.113 10 C 0.172 3.828 11 H 0.079 0.921 12 N -0.736 5.736 13 C 0.687 3.313 14 O -0.527 6.527 15 N -0.675 5.675 16 C 0.386 3.614 17 C -0.218 4.218 18 C -0.048 4.048 19 C -0.218 4.218 20 C 0.135 3.865 21 N -0.473 5.473 22 C -0.114 4.114 23 C -0.013 4.013 24 H 0.264 0.736 25 H 0.061 0.939 26 H 0.007 0.993 27 H 0.054 0.946 28 H 0.035 0.965 29 H 0.389 0.611 30 H 0.410 0.590 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.157 0.843 35 H 0.038 0.962 36 H 0.049 0.951 37 H 0.030 0.970 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.325 -15.175 -9.430 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.507 4.507 8 C -0.025 4.025 9 C -0.152 4.152 10 C 0.069 3.931 11 H 0.097 0.903 12 N -0.390 5.390 13 C 0.387 3.613 14 O -0.398 6.398 15 N -0.323 5.323 16 C 0.153 3.847 17 C -0.242 4.242 18 C -0.074 4.074 19 C -0.239 4.239 20 C -0.024 4.024 21 N -0.187 5.187 22 C -0.153 4.153 23 C -0.051 4.051 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.025 0.975 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.222 0.778 30 H 0.246 0.754 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.174 0.826 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 12.286 -14.195 -7.797 20.328 hybrid contribution 0.264 0.200 -1.656 1.688 sum 12.549 -13.995 -9.453 21.040 Atomic orbital electron populations 1.69832 1.06145 1.26930 1.50004 1.24834 0.94708 0.98583 0.94544 0.86655 0.80054 0.83242 0.78412 1.20478 1.21667 1.19113 1.20061 0.89416 0.91451 1.49783 1.19336 0.98676 0.92762 0.91692 1.21938 0.92278 0.98608 1.02360 1.20970 0.94070 0.88337 0.89709 0.90294 1.45719 1.22867 1.48111 1.22330 1.16152 0.82098 0.79259 0.83817 1.91042 1.58131 1.65278 1.25332 1.42910 1.27506 1.43539 1.18339 1.18260 0.86925 0.89004 0.90485 1.21404 1.01031 1.00395 1.01345 1.21292 0.93117 0.96669 0.96346 1.22019 1.03056 1.02591 0.96278 1.22733 0.90757 0.90214 0.98664 1.67762 1.07631 1.25400 1.17899 1.21921 0.97476 0.95277 1.00672 1.19707 0.96467 0.95006 0.93960 0.92616 0.92082 0.97486 0.92733 0.94598 0.77833 0.75388 0.84896 0.84788 0.85009 0.82611 0.94362 0.93172 0.95146 0.96148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 12.73 55.43 0.71 -24.81 16 2 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 3 Si 0.89 21.35 27.27 -169.99 -4.64 16.71 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.29 6.46 56.52 0.37 -5.93 16 7 C -0.49 -12.90 5.52 -98.92 -0.55 -13.44 16 8 C 0.01 0.33 5.97 -27.48 -0.16 0.16 16 9 C -0.11 -2.30 5.40 -26.64 -0.14 -2.45 16 10 C 0.17 3.42 2.35 -67.97 -0.16 3.27 16 11 H 0.08 1.76 7.58 -51.93 -0.39 1.37 16 12 N -0.74 -11.81 5.08 -58.72 -0.30 -12.11 16 13 C 0.69 11.85 8.48 -86.92 -0.74 11.11 16 14 O -0.53 -11.52 14.27 5.29 0.08 -11.44 16 15 N -0.67 -8.71 5.39 -15.81 -0.09 -8.80 16 16 C 0.39 5.22 7.42 -154.72 -1.15 4.08 16 17 C -0.22 -2.09 9.94 -39.24 -0.39 -2.48 16 18 C -0.05 -0.40 10.17 -39.31 -0.40 -0.80 16 19 C -0.22 -1.96 10.11 -39.42 -0.40 -2.36 16 20 C 0.13 1.62 11.18 -17.57 -0.20 1.42 16 21 N -0.47 -7.53 7.88 -12.37 -0.10 -7.62 16 22 C -0.11 -2.46 5.50 -26.66 -0.15 -2.61 16 23 C -0.01 -0.32 5.59 -27.51 -0.15 -0.47 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 26 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.39 4.87 8.62 -40.82 -0.35 4.51 16 30 H 0.41 3.50 8.72 -40.82 -0.36 3.14 16 31 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 34 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.03 0.73 4.78 -51.93 -0.25 0.48 16 38 H 0.02 0.50 8.14 -51.92 -0.42 0.07 16 LS Contribution 312.54 15.07 4.71 4.71 Total: -1.00 -33.64 312.54 -9.42 -43.07 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.12 Total: 2.88 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -4.68 Total: -2.59 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.22 Total: -53.34 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.64 Total: 16.71 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.64 -9.42 -43.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191351502.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.705 kcal (2) G-P(sol) polarization free energy of solvation -33.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds