Wall clock time and date at job start Mon Mar 30 2020 02:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99814 * 2 1 4 4 H 1.48499 * 109.46935 * 269.99719 * 3 2 1 5 5 H 1.48497 * 109.47160 * 29.99494 * 3 2 1 6 6 H 1.48501 * 109.46993 * 149.99865 * 3 2 1 7 7 C 1.37872 * 120.00064 * 179.97438 * 2 1 3 8 8 C 1.51272 * 120.85265 * 0.02562 * 7 2 1 9 9 C 1.53231 * 108.53505 * 128.62773 * 8 7 2 10 10 C 1.52952 * 109.40425 * 54.63193 * 9 8 7 11 11 H 1.09005 * 109.41793 * 56.43680 * 10 9 8 12 12 N 1.46503 * 109.41489 * 176.29268 * 10 9 8 13 13 C 1.34779 * 120.00351 * 204.99583 * 12 10 9 14 14 O 1.21583 * 119.99570 * 0.02562 * 13 12 10 15 15 N 1.34775 * 120.00405 * 179.97438 * 13 12 10 16 16 C 1.39387 * 119.99968 * 185.09133 * 15 13 12 17 17 C 1.39051 * 119.69184 * 174.93004 * 16 15 13 18 18 C 1.38354 * 119.09771 * 180.02562 * 17 16 15 19 19 C 1.38846 * 118.49931 * 359.97438 * 18 17 16 20 20 C 1.38068 * 119.31082 * 359.97438 * 19 18 17 21 21 N 1.31941 * 120.84657 * 0.27600 * 20 19 18 22 22 C 1.52960 * 109.81875 * 296.40014 * 10 9 8 23 23 C 1.51272 * 120.84933 * 179.97438 * 7 2 1 24 24 H 0.97000 * 120.00432 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.62242 * 8.91882 * 8 7 2 26 26 H 1.09000 * 109.78285 * 248.43715 * 8 7 2 27 27 H 1.08992 * 109.48459 * 294.64787 * 9 8 7 28 28 H 1.09003 * 109.48083 * 174.60873 * 9 8 7 29 29 H 0.96998 * 120.00050 * 25.00095 * 12 10 9 30 30 H 0.96997 * 119.99462 * 5.09487 * 15 13 12 31 31 H 1.07993 * 120.45068 * 359.97438 * 17 16 15 32 32 H 1.08001 * 120.75186 * 179.97438 * 18 17 16 33 33 H 1.07997 * 120.34594 * 179.97438 * 19 18 17 34 34 H 1.07994 * 119.57657 * 180.02562 * 20 19 18 35 35 H 1.09002 * 109.48437 * 183.58081 * 22 10 9 36 36 H 1.09003 * 109.47846 * 303.61697 * 22 10 9 37 37 H 1.08999 * 109.62908 * 351.08999 * 23 7 2 38 38 H 1.09008 * 109.62329 * 111.46419 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 6 1.2678 -2.5152 0.0005 9 6 1.8231 -3.3826 -1.1340 10 6 3.3400 -3.5069 -0.9828 11 1 3.5741 -3.9111 0.0021 12 7 3.8600 -4.4075 -2.0147 13 6 5.0176 -5.0675 -1.8122 14 8 5.6300 -4.9158 -0.7728 15 7 5.4958 -5.8964 -2.7612 16 6 6.6351 -6.6593 -2.5106 17 6 7.0621 -7.5893 -3.4520 18 6 8.1942 -8.3403 -3.1904 19 6 8.8635 -8.1342 -1.9915 20 6 8.3838 -7.1927 -1.1027 21 7 7.2984 -6.4945 -1.3772 22 6 3.9908 -2.1310 -1.1339 23 6 3.5171 -1.2164 0.0000 24 1 -0.4851 0.8400 -0.0004 25 1 0.2037 -2.3409 -0.1591 26 1 1.4169 -3.0208 0.9546 27 1 1.5900 -2.9198 -2.0929 28 1 1.3708 -4.3733 -1.0889 29 1 3.3713 -4.5288 -2.8437 30 1 5.0471 -5.9619 -3.6187 31 1 6.5169 -7.7242 -4.3744 32 1 8.5493 -9.0704 -3.9026 33 1 9.7502 -8.7042 -1.7565 34 1 8.9012 -7.0286 -0.1692 35 1 5.0749 -2.2346 -1.0887 36 1 3.7065 -1.6977 -2.0929 37 1 3.8982 -0.2078 -0.1599 38 1 3.8779 -1.5969 0.9556 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191351502.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:03 Heat of formation + Delta-G solvation = -13.145699 kcal Electronic energy + Delta-G solvation = -20772.874657 eV Core-core repulsion = 17614.290505 eV Total energy + Delta-G solvation = -3158.584152 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.81056 -40.43042 -38.55895 -35.87587 -35.36806 -33.45021 -33.19640 -31.51324 -30.87320 -28.83969 -25.07429 -24.43595 -23.61058 -23.27335 -21.74837 -21.26317 -19.61243 -18.90999 -17.91761 -17.08678 -16.71523 -16.55474 -16.42506 -16.33054 -15.36263 -15.11768 -15.07162 -14.77199 -14.49746 -14.13426 -13.93989 -13.84945 -13.49144 -12.81832 -12.79157 -12.70643 -12.54292 -11.93015 -11.86400 -11.78942 -11.50705 -11.39583 -10.90854 -10.75285 -10.68316 -10.54513 -10.00643 -9.90984 -9.15990 -8.17770 -6.11684 0.23350 0.50061 1.37042 1.41682 1.50220 1.50786 2.17406 2.40932 3.01728 3.05997 3.15343 3.71455 4.02506 4.04222 4.20260 4.22619 4.30308 4.44751 4.50366 4.70748 4.84518 4.86083 4.96335 5.04121 5.08140 5.14316 5.22513 5.24377 5.33433 5.39461 5.54629 5.59094 5.69380 5.74655 5.79783 5.88791 5.97682 6.35043 6.86751 6.93655 7.33757 7.46599 7.64886 8.92837 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.041571 B = 0.003597 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.378932 B = 7781.407180 C = 8090.495832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.027 3.973 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.500 4.500 8 C 0.009 3.991 9 C -0.098 4.098 10 C 0.186 3.814 11 H 0.051 0.949 12 N -0.723 5.723 13 C 0.687 3.313 14 O -0.580 6.580 15 N -0.659 5.659 16 C 0.347 3.653 17 C -0.202 4.202 18 C -0.046 4.046 19 C -0.201 4.201 20 C 0.104 3.896 21 N -0.531 5.531 22 C -0.105 4.105 23 C -0.015 4.015 24 H 0.264 0.736 25 H 0.036 0.964 26 H -0.004 1.004 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.410 0.590 30 H 0.431 0.569 31 H 0.168 0.832 32 H 0.177 0.823 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.034 0.966 36 H 0.058 0.942 37 H 0.031 0.969 38 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.982 -17.010 -12.043 25.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.172 4.172 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.187 1.187 7 C -0.519 4.519 8 C -0.029 4.029 9 C -0.137 4.137 10 C 0.081 3.919 11 H 0.069 0.931 12 N -0.379 5.379 13 C 0.387 3.613 14 O -0.454 6.454 15 N -0.310 5.310 16 C 0.115 3.885 17 C -0.225 4.225 18 C -0.072 4.072 19 C -0.223 4.223 20 C -0.053 4.053 21 N -0.246 5.246 22 C -0.145 4.145 23 C -0.053 4.053 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.014 0.986 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.246 0.754 30 H 0.271 0.729 31 H 0.186 0.814 32 H 0.194 0.806 33 H 0.182 0.818 34 H 0.178 0.822 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 13.962 -16.078 -10.479 23.733 hybrid contribution -0.165 0.625 -0.828 1.050 sum 13.797 -15.453 -11.307 23.601 Atomic orbital electron populations 1.69944 1.07422 1.27542 1.51764 1.25528 0.95348 1.01521 0.94760 0.85843 0.79016 0.79888 0.78796 1.19493 1.21666 1.18678 1.20571 0.90653 0.92122 1.48541 1.19299 0.97402 0.93273 0.92972 1.21690 0.92378 0.98993 1.00602 1.20490 0.93639 0.88059 0.89668 0.93052 1.45252 1.22939 1.47347 1.22324 1.16298 0.81764 0.79411 0.83849 1.91011 1.59579 1.67059 1.27785 1.42563 1.27611 1.42578 1.18244 1.18649 0.87520 0.90876 0.91423 1.21787 1.01096 0.98341 1.01313 1.21855 0.92146 0.96638 0.96575 1.22387 1.03385 1.00857 0.95629 1.22985 0.90703 0.91565 1.00085 1.67560 1.09495 1.27563 1.19971 1.21785 0.97258 0.95653 0.99763 1.19704 0.95200 0.95780 0.94624 0.92665 0.94519 0.98601 0.92029 0.92172 0.75383 0.72927 0.81409 0.80600 0.81797 0.82238 0.94683 0.92310 0.95034 0.97236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.05 12.73 21.45 0.27 -53.77 16 2 C 0.03 1.49 5.46 84.65 0.46 1.96 16 3 Si 0.94 43.91 27.27 68.60 1.87 45.79 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.26 -11.97 6.46 99.48 0.64 -11.32 16 7 C -0.50 -26.70 5.52 -16.17 -0.09 -26.79 16 8 C 0.01 0.43 5.97 30.11 0.18 0.61 16 9 C -0.10 -3.91 5.40 30.66 0.17 -3.74 16 10 C 0.19 7.34 2.35 44.96 0.11 7.45 16 11 H 0.05 2.34 7.58 -2.38 -0.02 2.32 16 12 N -0.72 -22.25 5.08 -457.94 -2.33 -24.58 16 13 C 0.69 23.39 8.48 179.05 1.52 24.91 16 14 O -0.58 -25.98 14.27 -3.98 -0.06 -26.04 16 15 N -0.66 -16.06 5.39 -322.20 -1.74 -17.80 16 16 C 0.35 8.93 7.42 132.93 0.99 9.92 16 17 C -0.20 -3.17 9.94 22.49 0.22 -2.94 16 18 C -0.05 -0.57 10.17 22.44 0.23 -0.34 16 19 C -0.20 -3.04 10.11 22.38 0.23 -2.81 16 20 C 0.10 2.45 11.18 84.64 0.95 3.39 16 21 N -0.53 -17.03 7.88 -193.05 -1.52 -18.55 16 22 C -0.11 -4.49 5.50 30.64 0.17 -4.32 16 23 C -0.01 -0.72 5.59 30.09 0.17 -0.56 16 24 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 25 H 0.04 2.00 7.07 -2.39 -0.02 1.98 16 26 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.41 9.21 8.62 -92.71 -0.80 8.41 16 30 H 0.43 6.21 8.72 -92.71 -0.81 5.40 16 31 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 32 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 33 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 35 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.03 1.50 4.78 -2.39 -0.01 1.49 16 38 H 0.01 0.46 8.14 -2.38 -0.02 0.45 16 Total: -1.00 -76.45 312.54 1.21 -75.23 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -0.58 Total: 12.99 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 5.29 Total: 6.73 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -5.31 Total: -114.70 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.06 Total: -26.04 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.87 Total: 45.79 kcal Total: -76.45 1.21 -75.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191351502.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.087 kcal (2) G-P(sol) polarization free energy of solvation -76.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds