Wall clock time and date at job start Mon Mar 30 2020 02:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99914 * 2 1 4 4 H 1.48494 * 109.47286 * 269.99273 * 3 2 1 5 5 H 1.48500 * 109.47043 * 29.99845 * 3 2 1 6 6 H 1.48503 * 109.47063 * 149.99426 * 3 2 1 7 7 C 1.37877 * 119.99964 * 179.97438 * 2 1 3 8 8 C 1.51337 * 120.88890 * 179.78818 * 7 2 1 9 9 C 1.53231 * 108.68249 * 231.22005 * 8 7 2 10 10 C 1.52959 * 109.40845 * 305.48120 * 9 8 7 11 11 H 1.08998 * 109.41317 * 303.49422 * 10 9 8 12 12 N 1.46498 * 109.35936 * 183.67021 * 10 9 8 13 13 C 1.34774 * 120.00088 * 84.68351 * 12 10 9 14 14 O 1.21573 * 120.00022 * 359.97438 * 13 12 10 15 15 N 1.34777 * 119.99694 * 180.02562 * 13 12 10 16 16 C 1.39397 * 119.99674 * 174.90089 * 15 13 12 17 17 C 1.39040 * 119.69644 * 185.10253 * 16 15 13 18 18 C 1.38350 * 119.10374 * 179.73160 * 17 16 15 19 19 C 1.38854 * 118.49107 * 0.52918 * 18 17 16 20 20 C 1.38052 * 119.31199 * 359.73577 * 19 18 17 21 21 N 1.31944 * 120.85328 * 359.97438 * 20 19 18 22 22 C 1.52963 * 109.81364 * 63.59694 * 10 9 8 23 23 C 1.51262 * 120.85064 * 0.02562 * 7 2 1 24 24 H 0.97000 * 120.00075 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46151 * 111.51485 * 8 7 2 26 26 H 1.08996 * 109.80249 * 351.12997 * 8 7 2 27 27 H 1.09002 * 109.48105 * 185.50612 * 9 8 7 28 28 H 1.08998 * 109.48278 * 65.46176 * 9 8 7 29 29 H 0.97001 * 119.99878 * 264.68763 * 12 10 9 30 30 H 0.96990 * 120.00493 * 354.89505 * 15 13 12 31 31 H 1.08006 * 120.45035 * 0.02562 * 17 16 15 32 32 H 1.07992 * 120.76001 * 180.24186 * 18 17 16 33 33 H 1.08009 * 120.34014 * 179.70434 * 19 18 17 34 34 H 1.08009 * 119.57356 * 180.02562 * 20 19 18 35 35 H 1.09005 * 109.47993 * 176.42483 * 22 10 9 36 36 H 1.08992 * 109.49031 * 56.38866 * 22 10 9 37 37 H 1.09000 * 109.62793 * 8.96385 * 23 7 2 38 38 H 1.09003 * 109.63365 * 248.58529 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 6 3.5177 -1.2175 -0.0043 9 6 3.9907 -2.1368 -1.1353 10 6 3.3393 -3.5119 -0.9787 11 1 3.5732 -3.9134 0.0073 12 7 3.8589 -4.4155 -2.0081 13 6 5.0162 -5.0754 -1.8038 14 8 5.6291 -4.9204 -0.7654 15 7 5.4944 -5.9062 -2.7511 16 6 6.7418 -6.5063 -2.5866 17 6 7.2762 -7.2770 -3.6131 18 6 8.5176 -7.8623 -3.4389 19 6 9.1798 -7.6650 -2.2345 20 6 8.5871 -6.8921 -1.2561 21 7 7.4043 -6.3414 -1.4528 22 6 1.8223 -3.3873 -1.1301 23 6 1.2677 -2.5151 0.0005 24 1 -0.4850 0.8400 -0.0004 25 1 3.8780 -1.5979 0.9516 26 1 3.9021 -0.2105 -0.1659 27 1 5.0748 -2.2409 -1.0898 28 1 3.7065 -1.7072 -2.0958 29 1 3.3701 -4.5387 -2.8368 30 1 4.9707 -6.0867 -3.5473 31 1 6.7317 -7.4129 -4.5359 32 1 8.9595 -8.4629 -4.2200 33 1 10.1482 -8.1120 -2.0647 34 1 9.0986 -6.7355 -0.3178 35 1 1.3695 -4.3776 -1.0810 36 1 1.5893 -2.9282 -2.0908 37 1 0.2037 -2.3409 -0.1599 38 1 1.4163 -3.0173 0.9565 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191351503.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:07 Heat of formation + Delta-G solvation = 9.567337 kcal Electronic energy + Delta-G solvation = -20779.630545 eV Core-core repulsion = 17622.031304 eV Total energy + Delta-G solvation = -3157.599241 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76986 -39.27038 -36.92026 -34.70831 -33.68069 -32.45663 -31.58794 -29.93305 -29.59651 -27.09639 -24.03562 -23.42442 -22.06604 -21.46569 -20.46506 -19.52631 -18.45487 -17.79301 -16.29688 -16.06521 -15.63809 -15.32920 -15.16429 -14.41561 -14.26348 -13.91387 -13.79241 -13.18285 -13.13070 -12.71360 -12.26573 -12.14309 -12.05154 -11.65512 -11.03802 -10.90182 -10.73678 -10.63638 -10.23163 -10.01443 -9.94966 -9.94314 -9.60251 -9.09225 -8.95880 -8.83056 -8.45473 -8.41786 -8.16637 -6.09405 -3.99604 1.04317 1.24685 2.60798 3.28895 3.37614 3.40112 3.41360 3.94524 4.14438 4.40563 4.54607 4.70587 4.91865 4.98790 5.11816 5.19297 5.55534 5.69189 5.80245 5.91295 6.03578 6.20148 6.24747 6.49152 6.50751 6.60577 6.74621 6.77467 6.90297 6.95579 7.01760 7.14743 7.30640 7.47821 7.66290 7.73475 7.80140 7.93362 8.30838 8.39780 8.87444 8.97398 9.56163 11.00187 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.039448 B = 0.003638 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.631080 B = 7694.853925 C = 8031.578650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.488 4.488 8 C -0.013 4.013 9 C -0.114 4.114 10 C 0.172 3.828 11 H 0.079 0.921 12 N -0.736 5.736 13 C 0.687 3.313 14 O -0.527 6.527 15 N -0.675 5.675 16 C 0.386 3.614 17 C -0.218 4.218 18 C -0.048 4.048 19 C -0.218 4.218 20 C 0.135 3.865 21 N -0.473 5.473 22 C -0.113 4.113 23 C 0.013 3.987 24 H 0.264 0.736 25 H 0.020 0.980 26 H 0.030 0.970 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.389 0.611 30 H 0.410 0.590 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.157 0.843 35 H 0.036 0.964 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.729 -14.597 -9.735 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.507 4.507 8 C -0.051 4.051 9 C -0.153 4.153 10 C 0.069 3.931 11 H 0.097 0.903 12 N -0.390 5.390 13 C 0.387 3.613 14 O -0.398 6.398 15 N -0.323 5.323 16 C 0.153 3.847 17 C -0.242 4.242 18 C -0.074 4.074 19 C -0.239 4.239 20 C -0.024 4.024 21 N -0.187 5.187 22 C -0.152 4.152 23 C -0.025 4.025 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.222 0.778 30 H 0.246 0.754 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.174 0.826 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 12.626 -13.711 -8.051 20.303 hybrid contribution 0.301 0.251 -1.686 1.731 sum 12.927 -13.460 -9.737 21.050 Atomic orbital electron populations 1.69830 1.06145 1.26928 1.50005 1.24829 0.94706 0.98580 0.94547 0.86655 0.80057 0.83245 0.78411 1.20480 1.21659 1.19121 1.20069 0.89394 0.91450 1.49782 1.19723 0.96464 0.94965 0.93978 1.21927 0.97479 0.95276 1.00660 1.20972 0.94069 0.88268 0.89779 0.90274 1.45719 1.23157 1.47756 1.22403 1.16147 0.82164 0.79307 0.83703 1.91039 1.58073 1.65839 1.24831 1.42910 1.17806 1.47455 1.24132 1.18259 0.85862 0.90421 0.90136 1.21402 0.98685 1.04082 0.99999 1.21291 0.93161 0.95977 0.96994 1.22020 1.02422 1.03970 0.95526 1.22731 0.89948 0.91008 0.98689 1.67765 1.08419 1.22048 1.20450 1.21934 0.92287 0.98629 1.02349 1.19326 0.98674 0.92745 0.91724 0.92615 0.96173 0.95144 0.94364 0.93181 0.77830 0.75396 0.84896 0.84787 0.85007 0.82610 0.94573 0.92740 0.92086 0.97497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 12.73 55.43 0.71 -24.81 16 2 C 0.08 2.07 5.46 -17.82 -0.10 1.98 16 3 Si 0.89 21.36 27.27 -169.99 -4.64 16.72 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.30 6.47 56.52 0.37 -5.94 16 7 C -0.49 -12.90 5.53 -98.89 -0.55 -13.45 16 8 C -0.01 -0.32 5.58 -27.45 -0.15 -0.47 16 9 C -0.11 -2.46 5.50 -26.63 -0.15 -2.61 16 10 C 0.17 3.42 2.35 -67.97 -0.16 3.26 16 11 H 0.08 1.77 7.58 -51.93 -0.39 1.37 16 12 N -0.74 -11.80 5.08 -58.72 -0.30 -12.10 16 13 C 0.69 11.85 8.48 -86.92 -0.74 11.11 16 14 O -0.53 -11.52 14.27 5.30 0.08 -11.44 16 15 N -0.67 -8.71 5.40 -15.81 -0.09 -8.80 16 16 C 0.39 5.23 7.42 -154.71 -1.15 4.08 16 17 C -0.22 -2.10 9.94 -39.24 -0.39 -2.49 16 18 C -0.05 -0.40 10.17 -39.31 -0.40 -0.80 16 19 C -0.22 -1.97 10.11 -39.42 -0.40 -2.36 16 20 C 0.13 1.62 11.17 -17.57 -0.20 1.42 16 21 N -0.47 -7.53 7.89 -12.37 -0.10 -7.63 16 22 C -0.11 -2.30 5.41 -26.65 -0.14 -2.45 16 23 C 0.01 0.33 5.96 -27.51 -0.16 0.16 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.03 0.73 4.81 -51.93 -0.25 0.48 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.39 4.86 8.62 -40.82 -0.35 4.51 16 30 H 0.41 3.49 8.72 -40.82 -0.36 3.13 16 31 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 33 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.16 1.54 8.06 -52.48 -0.42 1.11 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 LS Contribution 312.58 15.07 4.71 4.71 Total: -1.00 -33.66 312.58 -9.42 -43.08 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.12 Total: 2.87 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -4.68 Total: -2.60 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.22 Total: -53.34 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.64 Total: 16.72 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.66 -9.42 -43.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191351503.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.648 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds