Wall clock time and date at job start Mon Mar 30 2020 02:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99914 * 2 1 4 4 H 1.48494 * 109.47286 * 269.99273 * 3 2 1 5 5 H 1.48500 * 109.47043 * 29.99845 * 3 2 1 6 6 H 1.48503 * 109.47063 * 149.99426 * 3 2 1 7 7 C 1.37877 * 119.99964 * 179.97438 * 2 1 3 8 8 C 1.51337 * 120.88890 * 179.78818 * 7 2 1 9 9 C 1.53231 * 108.68249 * 231.22005 * 8 7 2 10 10 C 1.52959 * 109.40845 * 305.48120 * 9 8 7 11 11 H 1.08998 * 109.41317 * 303.49422 * 10 9 8 12 12 N 1.46498 * 109.35936 * 183.67021 * 10 9 8 13 13 C 1.34774 * 120.00088 * 84.68351 * 12 10 9 14 14 O 1.21573 * 120.00022 * 359.97438 * 13 12 10 15 15 N 1.34777 * 119.99694 * 180.02562 * 13 12 10 16 16 C 1.39397 * 119.99674 * 174.90089 * 15 13 12 17 17 C 1.39040 * 119.69644 * 185.10253 * 16 15 13 18 18 C 1.38350 * 119.10374 * 179.73160 * 17 16 15 19 19 C 1.38854 * 118.49107 * 0.52918 * 18 17 16 20 20 C 1.38052 * 119.31199 * 359.73577 * 19 18 17 21 21 N 1.31944 * 120.85328 * 359.97438 * 20 19 18 22 22 C 1.52963 * 109.81364 * 63.59694 * 10 9 8 23 23 C 1.51262 * 120.85064 * 0.02562 * 7 2 1 24 24 H 0.97000 * 120.00075 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46151 * 111.51485 * 8 7 2 26 26 H 1.08996 * 109.80249 * 351.12997 * 8 7 2 27 27 H 1.09002 * 109.48105 * 185.50612 * 9 8 7 28 28 H 1.08998 * 109.48278 * 65.46176 * 9 8 7 29 29 H 0.97001 * 119.99878 * 264.68763 * 12 10 9 30 30 H 0.96990 * 120.00493 * 354.89505 * 15 13 12 31 31 H 1.08006 * 120.45035 * 0.02562 * 17 16 15 32 32 H 1.07992 * 120.76001 * 180.24186 * 18 17 16 33 33 H 1.08009 * 120.34014 * 179.70434 * 19 18 17 34 34 H 1.08009 * 119.57356 * 180.02562 * 20 19 18 35 35 H 1.09005 * 109.47993 * 176.42483 * 22 10 9 36 36 H 1.08992 * 109.49031 * 56.38866 * 22 10 9 37 37 H 1.09000 * 109.62793 * 8.96385 * 23 7 2 38 38 H 1.09003 * 109.63365 * 248.58529 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 6 3.5177 -1.2175 -0.0043 9 6 3.9907 -2.1368 -1.1353 10 6 3.3393 -3.5119 -0.9787 11 1 3.5732 -3.9134 0.0073 12 7 3.8589 -4.4155 -2.0081 13 6 5.0162 -5.0754 -1.8038 14 8 5.6291 -4.9204 -0.7654 15 7 5.4944 -5.9062 -2.7511 16 6 6.7418 -6.5063 -2.5866 17 6 7.2762 -7.2770 -3.6131 18 6 8.5176 -7.8623 -3.4389 19 6 9.1798 -7.6650 -2.2345 20 6 8.5871 -6.8921 -1.2561 21 7 7.4043 -6.3414 -1.4528 22 6 1.8223 -3.3873 -1.1301 23 6 1.2677 -2.5151 0.0005 24 1 -0.4850 0.8400 -0.0004 25 1 3.8780 -1.5979 0.9516 26 1 3.9021 -0.2105 -0.1659 27 1 5.0748 -2.2409 -1.0898 28 1 3.7065 -1.7072 -2.0958 29 1 3.3701 -4.5387 -2.8368 30 1 4.9707 -6.0867 -3.5473 31 1 6.7317 -7.4129 -4.5359 32 1 8.9595 -8.4629 -4.2200 33 1 10.1482 -8.1120 -2.0647 34 1 9.0986 -6.7355 -0.3178 35 1 1.3695 -4.3776 -1.0810 36 1 1.5893 -2.9282 -2.0908 37 1 0.2037 -2.3409 -0.1599 38 1 1.4163 -3.0173 0.9565 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191351503.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:06 Heat of formation + Delta-G solvation = -13.225961 kcal Electronic energy + Delta-G solvation = -20780.618937 eV Core-core repulsion = 17622.031304 eV Total energy + Delta-G solvation = -3158.587633 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.81149 -40.43154 -38.55526 -35.87613 -35.36813 -33.45159 -33.19671 -31.51072 -30.87512 -28.84098 -25.07477 -24.43437 -23.61520 -23.27381 -21.74725 -21.26546 -19.61621 -18.91248 -17.91744 -17.08952 -16.59219 -16.55811 -16.50699 -16.36318 -15.38411 -15.11811 -15.02930 -14.78905 -14.50285 -14.13958 -13.94355 -13.85065 -13.47788 -12.81915 -12.78995 -12.70928 -12.54909 -11.93392 -11.86000 -11.78199 -11.51506 -11.39714 -10.91092 -10.75226 -10.68658 -10.54488 -9.99817 -9.92079 -9.16151 -8.17813 -6.11678 0.23369 0.49979 1.36988 1.41602 1.50092 1.50670 2.17619 2.40904 3.01511 3.06232 3.15350 3.71378 4.02363 4.04170 4.20243 4.22505 4.30204 4.44583 4.50236 4.70423 4.84357 4.85931 4.96270 5.04101 5.08120 5.14121 5.22286 5.24235 5.33382 5.39378 5.54340 5.59015 5.69318 5.74533 5.79813 5.88739 5.97649 6.35138 6.86739 6.93580 7.33706 7.46579 7.64874 8.92785 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.039448 B = 0.003638 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.631080 B = 7694.853925 C = 8031.578650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.027 3.973 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.500 4.500 8 C -0.015 4.015 9 C -0.105 4.105 10 C 0.186 3.814 11 H 0.052 0.948 12 N -0.723 5.723 13 C 0.687 3.313 14 O -0.580 6.580 15 N -0.659 5.659 16 C 0.347 3.653 17 C -0.202 4.202 18 C -0.046 4.046 19 C -0.201 4.201 20 C 0.104 3.896 21 N -0.531 5.531 22 C -0.098 4.098 23 C 0.009 3.991 24 H 0.264 0.736 25 H 0.009 0.991 26 H 0.031 0.969 27 H 0.034 0.966 28 H 0.058 0.942 29 H 0.410 0.590 30 H 0.431 0.569 31 H 0.168 0.832 32 H 0.177 0.823 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.036 0.964 38 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.511 -16.232 -12.453 25.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.171 4.171 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.187 1.187 7 C -0.519 4.519 8 C -0.053 4.053 9 C -0.144 4.144 10 C 0.081 3.919 11 H 0.070 0.930 12 N -0.379 5.379 13 C 0.387 3.613 14 O -0.454 6.454 15 N -0.310 5.310 16 C 0.115 3.885 17 C -0.225 4.225 18 C -0.072 4.072 19 C -0.223 4.223 20 C -0.053 4.053 21 N -0.246 5.246 22 C -0.137 4.137 23 C -0.029 4.029 24 H 0.073 0.927 25 H 0.027 0.973 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.246 0.754 30 H 0.271 0.729 31 H 0.186 0.814 32 H 0.194 0.806 33 H 0.182 0.818 34 H 0.178 0.822 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 14.428 -15.394 -10.837 23.719 hybrid contribution -0.159 0.625 -0.831 1.052 sum 14.269 -14.769 -11.669 23.620 Atomic orbital electron populations 1.69942 1.07417 1.27540 1.51759 1.25523 0.95347 1.01516 0.94764 0.85844 0.79019 0.79901 0.78790 1.19502 1.21641 1.18700 1.20579 0.90628 0.92135 1.48545 1.19719 0.95202 0.95739 0.94630 1.21789 0.97230 0.95673 0.99750 1.20493 0.93648 0.87984 0.89743 0.92999 1.45251 1.23240 1.46979 1.22396 1.16294 0.81780 0.79507 0.83738 1.91008 1.59528 1.67626 1.27270 1.42562 1.18133 1.46464 1.23841 1.18648 0.86202 0.92505 0.91113 1.21785 0.99043 1.01856 0.99854 1.21855 0.92454 0.95381 0.97526 1.22387 1.03212 1.01850 0.94812 1.22984 0.89665 0.92467 1.00233 1.67564 1.10348 1.24040 1.22622 1.21687 0.92373 0.99023 1.00595 1.19290 0.97402 0.93254 0.92996 0.92661 0.97263 0.95039 0.94737 0.92348 0.75379 0.72925 0.81409 0.80604 0.81797 0.82237 0.92095 0.92043 0.94519 0.98612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.04 12.73 21.45 0.27 -53.77 16 2 C 0.03 1.50 5.46 84.66 0.46 1.96 16 3 Si 0.94 43.94 27.27 68.60 1.87 45.81 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.26 -11.99 6.47 99.48 0.64 -11.34 16 7 C -0.50 -26.72 5.53 -16.15 -0.09 -26.81 16 8 C -0.01 -0.72 5.58 30.13 0.17 -0.55 16 9 C -0.11 -4.49 5.50 30.66 0.17 -4.32 16 10 C 0.19 7.34 2.35 44.97 0.11 7.44 16 11 H 0.05 2.36 7.58 -2.39 -0.02 2.34 16 12 N -0.72 -22.24 5.08 -457.96 -2.32 -24.56 16 13 C 0.69 23.38 8.48 179.05 1.52 24.90 16 14 O -0.58 -25.97 14.27 -3.95 -0.06 -26.03 16 15 N -0.66 -16.05 5.40 -322.21 -1.74 -17.79 16 16 C 0.35 8.94 7.42 132.92 0.99 9.93 16 17 C -0.20 -3.18 9.94 22.49 0.22 -2.95 16 18 C -0.05 -0.57 10.17 22.44 0.23 -0.35 16 19 C -0.20 -3.05 10.11 22.37 0.23 -2.82 16 20 C 0.10 2.45 11.17 84.63 0.95 3.39 16 21 N -0.53 -17.04 7.89 -193.05 -1.52 -18.56 16 22 C -0.10 -3.91 5.41 30.65 0.17 -3.74 16 23 C 0.01 0.43 5.96 30.09 0.18 0.61 16 24 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 25 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.03 1.50 4.81 -2.39 -0.01 1.48 16 27 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.41 9.20 8.62 -92.71 -0.80 8.40 16 30 H 0.43 6.18 8.72 -92.72 -0.81 5.38 16 31 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 32 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 33 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 34 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 35 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.04 2.00 7.07 -2.39 -0.02 1.98 16 38 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 Total: -1.00 -76.47 312.58 1.21 -75.25 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -0.58 Total: 12.95 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 5.29 Total: 6.70 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -5.31 Total: -114.68 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.06 Total: -26.03 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.87 Total: 45.81 kcal Total: -76.47 1.21 -75.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191351503.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.027 kcal (2) G-P(sol) polarization free energy of solvation -76.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds