Wall clock time and date at job start Mon Mar 30 2020 02:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00076 * 2 1 4 4 H 1.48500 * 109.47046 * 270.00575 * 3 2 1 5 5 H 1.48500 * 109.47323 * 30.00081 * 3 2 1 6 6 H 1.48498 * 109.47064 * 150.00380 * 3 2 1 7 7 C 1.37873 * 119.99560 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99661 * 183.86746 * 7 2 1 9 9 C 1.50701 * 120.00392 * 3.86729 * 7 2 1 10 10 N 1.46497 * 110.01695 * 61.27869 * 9 7 2 11 11 C 1.34775 * 119.99687 * 59.56023 * 10 9 7 12 12 O 1.21574 * 120.00668 * 4.76409 * 11 10 9 13 13 N 1.34783 * 119.99786 * 184.75786 * 11 10 9 14 14 C 1.39387 * 119.99935 * 184.96615 * 13 11 10 15 15 C 1.39050 * 119.69152 * 174.49443 * 14 13 11 16 16 C 1.38351 * 119.09546 * 179.72411 * 15 14 13 17 17 C 1.38851 * 118.49840 * 0.52567 * 16 15 14 18 18 C 1.38055 * 119.30937 * 359.45912 * 17 16 15 19 19 N 1.31949 * 120.85232 * 0.29280 * 18 17 16 20 20 C 1.54272 * 110.03264 * 182.67261 * 9 7 2 21 21 C 1.54964 * 104.16197 * 95.75142 * 20 9 7 22 22 C 1.54898 * 102.77399 * 37.88740 * 21 20 9 23 23 C 1.53870 * 110.02860 * 299.88716 * 9 7 2 24 24 H 0.96996 * 119.99677 * 5.00140 * 1 2 3 25 25 H 0.97000 * 120.00179 * 239.55675 * 10 9 7 26 26 H 0.97001 * 119.99560 * 4.97647 * 13 11 10 27 27 H 1.07998 * 120.45244 * 359.97438 * 15 14 13 28 28 H 1.08007 * 120.75113 * 180.25640 * 16 15 14 29 29 H 1.07999 * 120.34195 * 179.72656 * 17 16 15 30 30 H 1.08003 * 119.57563 * 180.27863 * 18 17 16 31 31 H 1.09000 * 110.48678 * 214.40211 * 20 9 7 32 32 H 1.09000 * 110.48195 * 337.04348 * 20 9 7 33 33 H 1.09004 * 110.72311 * 279.57734 * 21 20 9 34 34 H 1.08997 * 110.92191 * 156.29376 * 21 20 9 35 35 H 1.09000 * 110.47962 * 203.40504 * 22 21 20 36 36 H 1.09002 * 110.48384 * 80.76372 * 22 21 20 37 37 H 1.08999 * 110.03898 * 359.94856 * 23 9 7 38 38 H 1.09000 * 110.03514 * 121.38311 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0827 -1.1952 0.0626 9 6 1.2535 -2.4976 -0.0891 10 7 0.5020 -2.5590 -1.3451 11 6 1.1510 -2.4772 -2.5235 12 8 2.3660 -2.4396 -2.5470 13 7 0.4532 -2.4370 -3.6759 14 6 1.1237 -2.4569 -4.8977 15 6 0.3971 -2.5312 -6.0809 16 6 1.0750 -2.5444 -7.2869 17 6 2.4624 -2.4936 -7.2677 18 6 3.1193 -2.4207 -6.0556 19 7 2.4459 -2.4046 -4.9210 20 6 2.2386 -3.6818 -0.0043 21 6 2.2183 -4.0855 1.4917 22 6 0.7294 -3.8997 1.8764 23 6 0.2946 -2.6357 1.1063 24 1 -0.4849 0.8368 -0.0732 25 1 -0.4628 -2.6587 -1.3287 26 1 -0.5157 -2.3942 -3.6548 27 1 -0.6818 -2.5740 -6.0590 28 1 0.5372 -2.5973 -8.2221 29 1 3.0217 -2.5067 -8.1915 30 1 4.1982 -2.3764 -6.0358 31 1 1.8962 -4.5083 -0.6270 32 1 3.2391 -3.3678 -0.3019 33 1 2.8544 -3.4229 2.0787 34 1 2.5234 -5.1241 1.6188 35 1 0.6294 -3.7452 2.9507 36 1 0.1427 -4.7614 1.5577 37 1 0.3729 -1.7603 1.7510 38 1 -0.7301 -2.7485 0.7520 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191366595.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:50 Heat of formation + Delta-G solvation = 20.519590 kcal Electronic energy + Delta-G solvation = -21715.112197 eV Core-core repulsion = 18557.987881 eV Total energy + Delta-G solvation = -3157.124316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.20159 -38.72039 -36.89226 -33.96947 -32.75768 -32.11235 -31.75068 -29.49424 -27.62782 -27.01676 -24.12363 -23.47437 -22.75726 -20.27580 -19.67533 -18.84004 -17.86198 -17.04862 -16.35501 -15.80295 -15.23316 -14.79903 -14.49111 -14.44579 -14.13210 -13.77863 -13.17076 -13.05909 -12.84484 -12.61149 -12.30852 -11.77023 -11.41692 -10.90333 -10.85730 -10.63588 -10.35733 -10.23509 -10.12043 -9.97021 -9.67615 -9.55760 -9.35656 -9.33295 -9.21536 -8.41830 -8.26184 -7.84056 -7.37851 -6.01135 -4.03676 1.45531 1.64400 3.29766 3.38265 3.42190 3.47189 4.07520 4.48224 4.64894 4.74043 4.99702 5.12830 5.30467 5.34605 5.42743 5.65972 5.74950 5.79724 5.86296 5.92657 6.16872 6.39813 6.45650 6.51376 6.67083 6.69957 6.76944 6.86169 6.92925 7.05348 7.16816 7.21604 7.39193 7.50432 7.77341 7.93860 8.18754 8.37731 8.55197 8.98375 9.22446 9.62170 9.87360 11.03838 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017679 B = 0.006364 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.427616 B = 4398.358355 C = 5172.561903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.071 3.929 3 Si 0.887 3.113 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.487 4.487 8 H 0.059 0.941 9 C 0.308 3.692 10 N -0.704 5.704 11 C 0.688 3.312 12 O -0.524 6.524 13 N -0.678 5.678 14 C 0.397 3.603 15 C -0.227 4.227 16 C -0.049 4.049 17 C -0.230 4.230 18 C 0.134 3.866 19 N -0.469 5.469 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.090 4.090 24 H 0.257 0.743 25 H 0.372 0.628 26 H 0.404 0.596 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.152 0.848 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.078 0.922 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.635 -6.422 -8.773 11.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.132 4.132 3 Si 0.716 3.284 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.198 1.198 7 C -0.526 4.526 8 H 0.078 0.922 9 C 0.226 3.774 10 N -0.356 5.356 11 C 0.388 3.612 12 O -0.395 6.395 13 N -0.326 5.326 14 C 0.163 3.837 15 C -0.252 4.252 16 C -0.075 4.075 17 C -0.252 4.252 18 C -0.025 4.025 19 N -0.183 5.183 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.165 4.165 23 C -0.129 4.129 24 H 0.067 0.933 25 H 0.204 0.796 26 H 0.239 0.761 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.145 0.855 30 H 0.169 0.831 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.214 -6.211 -7.684 9.955 hybrid contribution -1.158 1.106 -1.045 1.912 sum -2.372 -5.105 -8.729 10.387 Atomic orbital electron populations 1.69945 1.05680 1.26597 1.50078 1.24913 0.94829 0.98897 0.94528 0.86658 0.80100 0.83620 0.78058 1.20929 1.21561 1.19799 1.21348 0.93193 0.89765 1.48342 0.92241 1.18506 0.87474 0.92723 0.78747 1.46179 1.08984 1.75878 1.04544 1.16136 0.86129 0.79190 0.79773 1.90936 1.10718 1.53196 1.84616 1.43318 1.09762 1.75741 1.03749 1.18380 0.88987 0.91324 0.85022 1.21395 1.00669 1.11119 0.92006 1.21209 0.94260 0.94766 0.97288 1.21912 0.95146 1.08623 0.99491 1.22709 1.00215 0.92628 0.86926 1.67863 1.06486 1.14599 1.29372 1.22658 1.01233 0.97516 0.93775 1.22416 0.96505 0.98939 0.97862 1.22427 0.96363 0.98648 0.99078 1.22151 0.97353 0.95980 0.97436 0.93325 0.79599 0.76084 0.85263 0.85267 0.85507 0.83055 0.94125 0.91632 0.91760 0.93592 0.93134 0.93386 0.90327 0.93828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.64 11.69 55.43 0.65 -22.99 16 2 C 0.07 1.93 5.03 -17.82 -0.09 1.84 16 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.49 -13.30 6.76 -34.44 -0.23 -13.53 16 8 H 0.06 1.73 7.51 -52.48 -0.39 1.33 16 9 C 0.31 7.28 0.51 -131.85 -0.07 7.21 16 10 N -0.70 -15.65 4.60 -52.45 -0.24 -15.89 16 11 C 0.69 15.92 7.96 -86.91 -0.69 15.23 16 12 O -0.52 -14.11 12.80 5.30 0.07 -14.05 16 13 N -0.68 -12.71 5.39 -15.81 -0.09 -12.79 16 14 C 0.40 7.25 7.42 -154.72 -1.15 6.10 16 15 C -0.23 -3.14 9.94 -39.24 -0.39 -3.53 16 16 C -0.05 -0.59 10.17 -39.31 -0.40 -0.99 16 17 C -0.23 -2.87 10.11 -39.42 -0.40 -3.27 16 18 C 0.13 2.12 11.17 -17.57 -0.20 1.92 16 19 N -0.47 -9.49 7.89 -12.37 -0.10 -9.59 16 20 C -0.11 -2.51 4.83 -25.03 -0.12 -2.63 16 21 C -0.12 -2.26 6.91 -24.69 -0.17 -2.43 16 22 C -0.13 -2.33 6.83 -25.07 -0.17 -2.50 16 23 C -0.09 -1.96 5.25 -25.61 -0.13 -2.10 16 24 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 25 H 0.37 7.43 8.10 -40.82 -0.33 7.10 16 26 H 0.40 6.04 8.73 -40.82 -0.36 5.68 16 27 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 29 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 30 H 0.15 2.03 8.06 -52.48 -0.42 1.60 16 31 H 0.04 0.88 8.05 -51.93 -0.42 0.46 16 32 H 0.06 1.60 7.42 -51.93 -0.39 1.22 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 1.91 6.98 -51.93 -0.36 1.55 16 38 H 0.04 0.91 7.44 -51.93 -0.39 0.53 16 LS Contribution 313.46 15.07 4.72 4.72 Total: -1.00 -32.51 313.46 -9.37 -41.88 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.15 Total: 10.26 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -4.21 Total: 1.32 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.22 Total: -61.26 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.07 Total: -14.05 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.51 -9.37 -41.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191366595.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.400 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds