Wall clock time and date at job start Mon Mar 30 2020 02:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00076 * 2 1 4 4 H 1.48500 * 109.47046 * 270.00575 * 3 2 1 5 5 H 1.48500 * 109.47323 * 30.00081 * 3 2 1 6 6 H 1.48498 * 109.47064 * 150.00380 * 3 2 1 7 7 C 1.37873 * 119.99560 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99661 * 183.86746 * 7 2 1 9 9 C 1.50701 * 120.00392 * 3.86729 * 7 2 1 10 10 N 1.46497 * 110.01695 * 61.27869 * 9 7 2 11 11 C 1.34775 * 119.99687 * 59.56023 * 10 9 7 12 12 O 1.21574 * 120.00668 * 4.76409 * 11 10 9 13 13 N 1.34783 * 119.99786 * 184.75786 * 11 10 9 14 14 C 1.39387 * 119.99935 * 184.96615 * 13 11 10 15 15 C 1.39050 * 119.69152 * 174.49443 * 14 13 11 16 16 C 1.38351 * 119.09546 * 179.72411 * 15 14 13 17 17 C 1.38851 * 118.49840 * 0.52567 * 16 15 14 18 18 C 1.38055 * 119.30937 * 359.45912 * 17 16 15 19 19 N 1.31949 * 120.85232 * 0.29280 * 18 17 16 20 20 C 1.54272 * 110.03264 * 182.67261 * 9 7 2 21 21 C 1.54964 * 104.16197 * 95.75142 * 20 9 7 22 22 C 1.54898 * 102.77399 * 37.88740 * 21 20 9 23 23 C 1.53870 * 110.02860 * 299.88716 * 9 7 2 24 24 H 0.96996 * 119.99677 * 5.00140 * 1 2 3 25 25 H 0.97000 * 120.00179 * 239.55675 * 10 9 7 26 26 H 0.97001 * 119.99560 * 4.97647 * 13 11 10 27 27 H 1.07998 * 120.45244 * 359.97438 * 15 14 13 28 28 H 1.08007 * 120.75113 * 180.25640 * 16 15 14 29 29 H 1.07999 * 120.34195 * 179.72656 * 17 16 15 30 30 H 1.08003 * 119.57563 * 180.27863 * 18 17 16 31 31 H 1.09000 * 110.48678 * 214.40211 * 20 9 7 32 32 H 1.09000 * 110.48195 * 337.04348 * 20 9 7 33 33 H 1.09004 * 110.72311 * 279.57734 * 21 20 9 34 34 H 1.08997 * 110.92191 * 156.29376 * 21 20 9 35 35 H 1.09000 * 110.47962 * 203.40504 * 22 21 20 36 36 H 1.09002 * 110.48384 * 80.76372 * 22 21 20 37 37 H 1.08999 * 110.03898 * 359.94856 * 23 9 7 38 38 H 1.09000 * 110.03514 * 121.38311 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0827 -1.1952 0.0626 9 6 1.2535 -2.4976 -0.0891 10 7 0.5020 -2.5590 -1.3451 11 6 1.1510 -2.4772 -2.5235 12 8 2.3660 -2.4396 -2.5470 13 7 0.4532 -2.4370 -3.6759 14 6 1.1237 -2.4569 -4.8977 15 6 0.3971 -2.5312 -6.0809 16 6 1.0750 -2.5444 -7.2869 17 6 2.4624 -2.4936 -7.2677 18 6 3.1193 -2.4207 -6.0556 19 7 2.4459 -2.4046 -4.9210 20 6 2.2386 -3.6818 -0.0043 21 6 2.2183 -4.0855 1.4917 22 6 0.7294 -3.8997 1.8764 23 6 0.2946 -2.6357 1.1063 24 1 -0.4849 0.8368 -0.0732 25 1 -0.4628 -2.6587 -1.3287 26 1 -0.5157 -2.3942 -3.6548 27 1 -0.6818 -2.5740 -6.0590 28 1 0.5372 -2.5973 -8.2221 29 1 3.0217 -2.5067 -8.1915 30 1 4.1982 -2.3764 -6.0358 31 1 1.8962 -4.5083 -0.6270 32 1 3.2391 -3.3678 -0.3019 33 1 2.8544 -3.4229 2.0787 34 1 2.5234 -5.1241 1.6188 35 1 0.6294 -3.7452 2.9507 36 1 0.1427 -4.7614 1.5577 37 1 0.3729 -1.7603 1.7510 38 1 -0.7301 -2.7485 0.7520 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191366595.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:50 Heat of formation + Delta-G solvation = -0.789939 kcal Electronic energy + Delta-G solvation = -21716.036248 eV Core-core repulsion = 18557.987881 eV Total energy + Delta-G solvation = -3158.048366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.56495 -40.29659 -38.53555 -35.50821 -34.61654 -33.76150 -33.15532 -30.79192 -29.33075 -28.79915 -26.02347 -24.69175 -24.01274 -21.85296 -21.22530 -20.69291 -19.37594 -18.55981 -18.20309 -16.90879 -16.67723 -16.48502 -16.27016 -16.03075 -15.65539 -15.15837 -14.83414 -14.64415 -14.44078 -14.02825 -13.79691 -13.29081 -12.94999 -12.76737 -12.74017 -12.50332 -12.21752 -11.78512 -11.65192 -11.62926 -11.28189 -11.21780 -11.18377 -10.91718 -10.69923 -10.40052 -9.79743 -9.39537 -8.97370 -8.08816 -6.15018 0.31041 0.56789 1.29962 1.34315 1.42422 1.90683 2.41333 2.63531 3.13792 3.18813 3.52293 3.91258 4.06798 4.11304 4.20052 4.26790 4.31200 4.36285 4.51639 4.82276 4.89634 4.99894 5.00889 5.09331 5.14657 5.26281 5.27865 5.31954 5.36499 5.47453 5.55574 5.65890 5.75382 5.85788 6.04302 6.15618 6.33190 6.52148 6.85267 7.20741 7.49189 7.66091 8.16230 8.92722 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017679 B = 0.006364 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.427616 B = 4398.358355 C = 5172.561903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.040 3.960 3 Si 0.925 3.075 4 H -0.299 1.299 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.503 4.503 8 H 0.026 0.974 9 C 0.301 3.699 10 N -0.701 5.701 11 C 0.684 3.316 12 O -0.573 6.573 13 N -0.673 5.673 14 C 0.353 3.647 15 C -0.213 4.213 16 C -0.044 4.044 17 C -0.207 4.207 18 C 0.103 3.897 19 N -0.530 5.530 20 C -0.108 4.108 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.083 4.083 24 H 0.258 0.742 25 H 0.384 0.616 26 H 0.420 0.580 27 H 0.162 0.838 28 H 0.178 0.822 29 H 0.166 0.834 30 H 0.159 0.841 31 H 0.042 0.958 32 H 0.028 0.972 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.397 -7.372 -10.420 13.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.161 4.161 3 Si 0.753 3.247 4 H -0.226 1.226 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.543 4.543 8 H 0.044 0.956 9 C 0.217 3.783 10 N -0.353 5.353 11 C 0.384 3.616 12 O -0.447 6.447 13 N -0.322 5.322 14 C 0.121 3.879 15 C -0.237 4.237 16 C -0.070 4.070 17 C -0.229 4.229 18 C -0.055 4.055 19 N -0.245 5.245 20 C -0.146 4.146 21 C -0.151 4.151 22 C -0.154 4.154 23 C -0.122 4.122 24 H 0.067 0.933 25 H 0.217 0.783 26 H 0.258 0.742 27 H 0.180 0.820 28 H 0.195 0.805 29 H 0.184 0.816 30 H 0.176 0.824 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.015 -7.159 -9.370 12.171 hybrid contribution -0.550 1.395 -0.728 1.667 sum -3.565 -5.764 -10.097 12.161 Atomic orbital electron populations 1.69963 1.05576 1.26793 1.50240 1.25283 0.95647 1.00369 0.94825 0.86088 0.79534 0.82064 0.77002 1.22603 1.19878 1.20189 1.21419 0.91878 0.92075 1.48905 0.95608 1.18522 0.88259 0.91520 0.79950 1.45892 1.09428 1.75784 1.04230 1.16335 0.85803 0.78666 0.80828 1.90898 1.12876 1.55252 1.85633 1.42938 1.10356 1.75915 1.03037 1.18764 0.89111 0.94235 0.85803 1.21758 1.02211 1.08818 0.90874 1.21812 0.94146 0.92675 0.98341 1.22333 0.95933 1.05129 0.99461 1.23014 1.00879 0.94144 0.87415 1.67628 1.08305 1.16347 1.32253 1.22524 0.98804 0.97016 0.96297 1.22391 0.97292 1.00472 0.94928 1.22373 0.95577 0.97576 0.99830 1.21981 0.97188 0.96704 0.96346 0.93281 0.78258 0.74190 0.82044 0.80510 0.81624 0.82398 0.93966 0.95295 0.92694 0.90524 0.91089 0.90903 0.93282 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.80 11.69 21.45 0.25 -47.55 16 2 C 0.04 2.24 5.03 84.65 0.43 2.66 16 3 Si 0.92 46.55 29.54 68.60 2.03 48.58 16 4 H -0.30 -15.72 7.11 99.48 0.71 -15.01 16 5 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 7 C -0.50 -28.67 6.76 25.60 0.17 -28.49 16 8 H 0.03 1.60 7.51 -2.91 -0.02 1.57 16 9 C 0.30 14.56 0.51 3.58 0.00 14.56 16 10 N -0.70 -31.75 4.60 -438.12 -2.02 -33.77 16 11 C 0.68 32.73 7.96 179.05 1.43 34.16 16 12 O -0.57 -32.58 12.80 -3.95 -0.05 -32.63 16 13 N -0.67 -25.50 5.39 -322.20 -1.74 -27.24 16 14 C 0.35 12.88 7.42 132.93 0.99 13.87 16 15 C -0.21 -5.31 9.94 22.49 0.22 -5.08 16 16 C -0.04 -0.87 10.17 22.44 0.23 -0.64 16 17 C -0.21 -4.55 10.11 22.37 0.23 -4.32 16 18 C 0.10 3.24 11.17 84.63 0.95 4.19 16 19 N -0.53 -22.13 7.89 -193.05 -1.52 -23.65 16 20 C -0.11 -4.90 4.83 31.70 0.15 -4.74 16 21 C -0.11 -4.17 6.91 31.91 0.22 -3.95 16 22 C -0.12 -3.98 6.83 31.67 0.22 -3.76 16 23 C -0.08 -3.58 5.25 31.32 0.16 -3.42 16 24 H 0.26 13.51 8.32 -92.71 -0.77 12.74 16 25 H 0.38 15.31 8.10 -92.71 -0.75 14.56 16 26 H 0.42 12.36 8.73 -92.71 -0.81 11.55 16 27 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 28 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 29 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 30 H 0.16 4.38 8.06 -2.91 -0.02 4.35 16 31 H 0.04 1.86 8.05 -2.39 -0.02 1.84 16 32 H 0.03 1.49 7.42 -2.39 -0.02 1.47 16 33 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.05 2.38 6.98 -2.39 -0.02 2.37 16 38 H 0.05 2.04 7.44 -2.39 -0.02 2.02 16 Total: -1.00 -75.43 313.46 1.87 -73.56 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.47 Total: 27.66 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 5.39 Total: 15.03 kcal Atomic # 7 Polarization: -127.18 SS G_CDS: -5.03 Total: -132.21 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.05 Total: -32.63 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -75.43 1.87 -73.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191366595.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.775 kcal (2) G-P(sol) polarization free energy of solvation -75.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds