Wall clock time and date at job start Mon Mar 30 2020 01:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34713 * 116.99551 * 2 1 4 4 O 1.21469 * 120.00240 * 0.02562 * 3 2 1 5 5 C 1.47727 * 119.99407 * 180.02562 * 3 2 1 6 6 C 1.39654 * 120.14981 * 359.97438 * 5 3 2 7 7 C 1.37920 * 119.84357 * 180.02562 * 6 5 3 8 8 C 1.38394 * 120.15416 * 359.73286 * 7 6 5 9 9 C 1.38343 * 120.29999 * 0.54433 * 8 7 6 10 10 C 1.50702 * 119.92734 * 179.72373 * 9 8 7 11 11 N 1.46902 * 109.47215 * 269.73255 * 10 9 8 12 12 C 1.47961 * 111.00005 * 169.99576 * 11 10 9 13 13 C 1.53934 * 86.17939 * 137.58072 * 12 11 10 14 14 C 1.50703 * 113.73399 * 221.81705 * 13 12 11 15 15 H 1.07999 * 119.99920 * 358.09577 * 14 13 12 16 16 C 1.37877 * 119.99669 * 178.10223 * 14 13 12 17 17 N 1.31510 * 120.00506 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99624 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47014 * 59.99839 * 18 16 14 20 20 H 1.48503 * 109.47043 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47160 * 300.00101 * 18 16 14 22 22 C 1.48296 * 111.00409 * 269.34877 * 11 10 9 23 23 C 1.37965 * 120.15290 * 359.45601 * 9 8 7 24 24 H 1.09000 * 109.46736 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47004 * 299.99663 * 1 2 3 26 26 H 1.09003 * 109.46973 * 59.99611 * 1 2 3 27 27 H 1.07993 * 120.07665 * 0.04805 * 6 5 3 28 28 H 1.08002 * 119.92612 * 180.02562 * 7 6 5 29 29 H 1.07994 * 119.85113 * 180.27273 * 8 7 6 30 30 H 1.09001 * 109.47251 * 149.72831 * 10 9 8 31 31 H 1.09004 * 109.46551 * 29.73197 * 10 9 8 32 32 H 1.09007 * 113.75652 * 23.26342 * 12 11 10 33 33 H 1.08993 * 113.76177 * 251.90248 * 12 11 10 34 34 H 1.09002 * 113.73279 * 90.64057 * 13 12 11 35 35 H 0.96995 * 120.00309 * 180.02562 * 17 16 14 36 36 H 1.09001 * 113.86054 * 108.14174 * 22 11 10 37 37 H 1.09000 * 113.76062 * 336.68481 * 22 11 10 38 38 H 1.08002 * 120.08284 * 180.29179 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2191 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3025 0.1084 -0.0006 7 6 5.6794 0.1879 -0.0006 8 6 6.3044 1.4226 -0.0062 9 6 5.5540 2.5848 -0.0004 10 6 6.2434 3.9249 -0.0003 11 7 6.4675 4.3602 1.3848 12 6 7.3484 5.5481 1.4314 13 6 6.3838 6.0938 2.4996 14 6 6.0708 7.5596 2.3423 15 1 6.5375 8.1296 1.5525 16 6 5.1889 8.1728 3.2066 17 7 4.6212 7.4789 4.1687 18 14 4.8016 9.9899 3.0120 19 1 4.2136 10.2296 1.6696 20 1 3.8320 10.4041 4.0578 21 1 6.0508 10.7802 3.1535 22 6 5.3243 5.1642 1.8808 23 6 4.1759 2.5199 -0.0004 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.8160 -0.8558 -0.0009 28 1 6.2712 -0.7155 -0.0010 29 1 7.3829 1.4792 -0.0106 30 1 5.6183 4.6552 -0.5141 31 1 7.2011 3.8408 -0.5141 32 1 7.3541 6.1271 0.5078 33 1 8.3490 5.3382 1.8092 34 1 6.6610 5.8257 3.5191 35 1 4.0005 7.9102 4.7766 36 1 4.7089 4.6479 2.6175 37 1 4.7393 5.6312 1.0885 38 1 3.5912 3.4280 -0.0007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204637472.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:24 Heat of formation + Delta-G solvation = -27.177249 kcal Electronic energy + Delta-G solvation = -20468.825087 eV Core-core repulsion = 17277.339730 eV Total energy + Delta-G solvation = -3191.485357 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.58435 -39.28576 -38.15511 -36.44730 -33.15253 -32.08569 -31.25256 -28.64262 -27.78494 -25.55903 -24.96745 -24.04370 -22.79542 -21.43283 -20.43416 -18.56839 -17.65874 -17.14846 -16.53912 -16.41114 -16.02139 -15.16727 -14.86054 -14.71796 -14.23785 -13.94621 -13.63424 -13.52342 -13.47120 -12.73597 -12.42858 -12.26169 -11.93137 -11.81173 -11.59650 -11.25157 -11.07376 -10.91788 -10.88617 -10.66445 -10.49918 -10.28346 -9.75758 -9.36431 -9.02882 -8.99744 -8.64835 -8.41470 -7.91542 -6.03707 -4.08850 0.73401 1.38973 2.55239 2.59616 3.31288 3.36659 3.38347 3.79385 4.41620 4.63453 4.77588 4.85702 4.94725 5.03439 5.04483 5.15792 5.26240 5.30855 5.35414 5.42909 5.62333 5.75657 5.93661 6.02620 6.11993 6.18357 6.27654 6.34307 6.42633 6.47356 6.62837 6.65518 6.77678 6.87957 7.16614 7.21076 7.69674 7.72856 7.90753 8.05168 8.36979 8.93348 9.56305 11.05656 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018515 B = 0.004295 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.892320 B = 6517.384619 C = 7708.120977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.508 3.492 4 O -0.502 6.502 5 C -0.130 4.130 6 C -0.071 4.071 7 C -0.136 4.136 8 C -0.067 4.067 9 C -0.069 4.069 10 C 0.055 3.945 11 N -0.486 5.486 12 C -0.002 4.002 13 C 0.040 3.960 14 C -0.521 4.521 15 H 0.057 0.943 16 C 0.067 3.933 17 N -0.885 5.885 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.014 3.986 23 C -0.043 4.043 24 H 0.101 0.899 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.133 0.867 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.262 0.738 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.918 -16.364 -9.719 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.353 3.647 4 O -0.390 6.390 5 C -0.131 4.131 6 C -0.090 4.090 7 C -0.154 4.154 8 C -0.086 4.086 9 C -0.070 4.070 10 C -0.073 4.073 11 N -0.209 5.209 12 C -0.130 4.130 13 C 0.021 3.979 14 C -0.560 4.560 15 H 0.075 0.925 16 C -0.136 4.136 17 N -0.523 5.523 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.115 4.115 23 C -0.062 4.062 24 H 0.119 0.881 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.096 -16.657 -9.236 19.161 hybrid contribution -0.871 1.663 -0.558 1.958 sum -2.967 -14.994 -9.795 18.154 Atomic orbital electron populations 1.23267 0.76143 1.03568 1.02749 1.86531 1.23444 1.32862 1.84610 1.21308 0.89283 0.81354 0.72722 1.90862 1.66752 1.35962 1.45456 1.19010 0.88596 0.95079 1.10446 1.21349 0.93985 0.97504 0.96142 1.21096 0.94227 0.97924 1.02168 1.21329 1.00346 0.91696 0.95188 1.19823 0.92624 0.95897 0.98634 1.21627 0.99172 0.92442 0.94092 1.68623 1.09942 1.27298 1.15043 1.24086 0.97741 0.90592 1.00590 1.20292 0.89426 0.93976 0.94224 1.21050 1.26179 0.94062 1.14665 0.92496 1.25004 0.95824 0.97895 0.94829 1.69951 1.29085 1.36141 1.17075 0.86691 0.78199 0.85484 0.77820 1.20246 1.21234 1.20166 1.24200 0.94321 0.94240 0.98733 1.21223 0.94314 0.96694 0.93975 0.88082 0.91727 0.91887 0.84872 0.85333 0.85386 0.93076 0.90745 0.92604 0.91512 0.92340 0.92793 0.91452 0.92644 0.84656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.39 9.82 -40.53 -0.40 -4.79 16 3 C 0.51 7.65 7.90 34.61 0.27 7.92 16 4 O -0.50 -9.00 16.14 -19.24 -0.31 -9.31 16 5 C -0.13 -1.89 5.87 -104.98 -0.62 -2.51 16 6 C -0.07 -0.85 9.62 -39.17 -0.38 -1.22 16 7 C -0.14 -1.50 10.03 -39.64 -0.40 -1.90 16 8 C -0.07 -0.85 9.69 -39.49 -0.38 -1.23 16 9 C -0.07 -1.05 5.43 -104.68 -0.57 -1.62 16 10 C 0.05 0.90 4.92 -4.97 -0.02 0.88 16 11 N -0.49 -9.68 6.15 -239.48 -1.47 -11.16 16 12 C 0.00 -0.03 7.50 -2.76 -0.02 -0.06 16 13 C 0.04 1.00 3.60 -90.84 -0.33 0.67 16 14 C -0.52 -14.22 8.77 -34.44 -0.30 -14.52 16 15 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 16 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 17 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 18 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.01 0.32 7.53 -2.57 -0.02 0.30 16 23 C -0.04 -0.69 9.24 -39.17 -0.36 -1.05 16 24 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.13 1.28 7.61 -52.49 -0.40 0.88 16 28 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.05 0.87 7.32 -51.93 -0.38 0.49 16 31 H 0.07 1.07 8.02 -51.93 -0.42 0.66 16 32 H 0.06 1.11 7.88 -51.92 -0.41 0.70 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.61 8.14 -51.93 -0.42 1.18 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.06 1.31 7.43 -51.93 -0.39 0.92 16 38 H 0.14 2.34 7.65 -52.49 -0.40 1.94 16 LS Contribution 329.38 15.07 4.96 4.96 Total: -1.00 -30.93 329.38 -8.98 -39.91 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.32 Total: 0.39 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -2.15 Total: -11.17 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.74 Total: -36.22 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.71 Total: -14.10 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.93 -8.98 -39.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204637472.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.728 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds