Wall clock time and date at job start Mon Mar 30 2020 01:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34713 * 116.99551 * 2 1 4 4 O 1.21469 * 120.00240 * 0.02562 * 3 2 1 5 5 C 1.47727 * 119.99407 * 180.02562 * 3 2 1 6 6 C 1.39654 * 120.14981 * 359.97438 * 5 3 2 7 7 C 1.37920 * 119.84357 * 180.02562 * 6 5 3 8 8 C 1.38394 * 120.15416 * 359.73286 * 7 6 5 9 9 C 1.38343 * 120.29999 * 0.54433 * 8 7 6 10 10 C 1.50702 * 119.92734 * 179.72373 * 9 8 7 11 11 N 1.46902 * 109.47215 * 269.73255 * 10 9 8 12 12 C 1.47961 * 111.00005 * 169.99576 * 11 10 9 13 13 C 1.53934 * 86.17939 * 137.58072 * 12 11 10 14 14 C 1.50703 * 113.73399 * 221.81705 * 13 12 11 15 15 H 1.07999 * 119.99920 * 358.09577 * 14 13 12 16 16 C 1.37877 * 119.99669 * 178.10223 * 14 13 12 17 17 N 1.31510 * 120.00506 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99624 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47014 * 59.99839 * 18 16 14 20 20 H 1.48503 * 109.47043 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47160 * 300.00101 * 18 16 14 22 22 C 1.48296 * 111.00409 * 269.34877 * 11 10 9 23 23 C 1.37965 * 120.15290 * 359.45601 * 9 8 7 24 24 H 1.09000 * 109.46736 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47004 * 299.99663 * 1 2 3 26 26 H 1.09003 * 109.46973 * 59.99611 * 1 2 3 27 27 H 1.07993 * 120.07665 * 0.04805 * 6 5 3 28 28 H 1.08002 * 119.92612 * 180.02562 * 7 6 5 29 29 H 1.07994 * 119.85113 * 180.27273 * 8 7 6 30 30 H 1.09001 * 109.47251 * 149.72831 * 10 9 8 31 31 H 1.09004 * 109.46551 * 29.73197 * 10 9 8 32 32 H 1.09007 * 113.75652 * 23.26342 * 12 11 10 33 33 H 1.08993 * 113.76177 * 251.90248 * 12 11 10 34 34 H 1.09002 * 113.73279 * 90.64057 * 13 12 11 35 35 H 0.96995 * 120.00309 * 180.02562 * 17 16 14 36 36 H 1.09001 * 113.86054 * 108.14174 * 22 11 10 37 37 H 1.09000 * 113.76062 * 336.68481 * 22 11 10 38 38 H 1.08002 * 120.08284 * 180.29179 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2191 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3025 0.1084 -0.0006 7 6 5.6794 0.1879 -0.0006 8 6 6.3044 1.4226 -0.0062 9 6 5.5540 2.5848 -0.0004 10 6 6.2434 3.9249 -0.0003 11 7 6.4675 4.3602 1.3848 12 6 7.3484 5.5481 1.4314 13 6 6.3838 6.0938 2.4996 14 6 6.0708 7.5596 2.3423 15 1 6.5375 8.1296 1.5525 16 6 5.1889 8.1728 3.2066 17 7 4.6212 7.4789 4.1687 18 14 4.8016 9.9899 3.0120 19 1 4.2136 10.2296 1.6696 20 1 3.8320 10.4041 4.0578 21 1 6.0508 10.7802 3.1535 22 6 5.3243 5.1642 1.8808 23 6 4.1759 2.5199 -0.0004 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.8160 -0.8558 -0.0009 28 1 6.2712 -0.7155 -0.0010 29 1 7.3829 1.4792 -0.0106 30 1 5.6183 4.6552 -0.5141 31 1 7.2011 3.8408 -0.5141 32 1 7.3541 6.1271 0.5078 33 1 8.3490 5.3382 1.8092 34 1 6.6610 5.8257 3.5191 35 1 4.0005 7.9102 4.7766 36 1 4.7089 4.6479 2.6175 37 1 4.7393 5.6312 1.0885 38 1 3.5912 3.4280 -0.0007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204637472.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:24 Heat of formation + Delta-G solvation = -46.579135 kcal Electronic energy + Delta-G solvation = -20469.666416 eV Core-core repulsion = 17277.339730 eV Total energy + Delta-G solvation = -3192.326686 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.69450 -40.70266 -39.50442 -37.56087 -34.92643 -33.62685 -32.29603 -30.18860 -28.71306 -27.31124 -26.72860 -25.11069 -24.37486 -22.57424 -21.58978 -20.43938 -18.90817 -18.45058 -18.20689 -17.45878 -17.01630 -16.77221 -16.43380 -16.15948 -15.78866 -15.37845 -14.88967 -14.59695 -14.53979 -14.06958 -13.94214 -13.44532 -13.40020 -13.13529 -13.10195 -12.86333 -12.71111 -12.42411 -12.25410 -12.05772 -11.88807 -11.64984 -11.52605 -11.20924 -10.96708 -10.54643 -10.02973 -9.82277 -9.59638 -8.16411 -6.28416 -0.33953 0.34645 1.40764 1.42325 1.44277 1.50097 1.61008 2.40731 2.72193 3.13331 3.33460 3.63035 3.78251 3.86103 4.04808 4.22920 4.26520 4.28719 4.31016 4.36879 4.47051 4.53245 4.59238 4.67737 4.75789 4.83719 4.86976 4.97319 4.99352 5.15728 5.20868 5.26483 5.37595 5.46086 5.61267 5.64048 5.83788 5.89464 6.27892 6.33713 6.59182 6.81024 7.40462 8.92830 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018515 B = 0.004295 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.892320 B = 6517.384619 C = 7708.120977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.508 3.492 4 O -0.545 6.545 5 C -0.149 4.149 6 C -0.059 4.059 7 C -0.123 4.123 8 C -0.062 4.062 9 C -0.088 4.088 10 C 0.057 3.943 11 N -0.479 5.479 12 C 0.016 3.984 13 C 0.020 3.980 14 C -0.535 4.535 15 H 0.061 0.939 16 C 0.014 3.986 17 N -0.923 5.923 18 Si 0.956 3.044 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.265 1.265 22 C 0.026 3.974 23 C -0.067 4.067 24 H 0.142 0.858 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.162 0.838 28 H 0.172 0.828 29 H 0.153 0.847 30 H 0.039 0.961 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.025 0.975 35 H 0.262 0.738 36 H 0.040 0.960 37 H 0.044 0.956 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.531 -18.367 -11.050 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.355 3.645 4 O -0.437 6.437 5 C -0.150 4.150 6 C -0.077 4.077 7 C -0.141 4.141 8 C -0.080 4.080 9 C -0.089 4.089 10 C -0.071 4.071 11 N -0.202 5.202 12 C -0.113 4.113 13 C 0.001 3.999 14 C -0.573 4.573 15 H 0.080 0.920 16 C -0.186 4.186 17 N -0.561 5.561 18 Si 0.781 3.219 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.190 1.190 22 C -0.103 4.103 23 C -0.086 4.086 24 H 0.160 0.840 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.179 0.821 28 H 0.189 0.811 29 H 0.171 0.829 30 H 0.057 0.943 31 H 0.123 0.877 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.694 -18.684 -10.585 21.485 hybrid contribution -1.316 2.144 -0.165 2.521 sum -2.010 -16.540 -10.749 19.829 Atomic orbital electron populations 1.23618 0.74308 1.06138 1.02432 1.86516 1.25203 1.31090 1.83857 1.21545 0.89693 0.81537 0.71698 1.90837 1.67673 1.37459 1.47682 1.19118 0.88607 0.95610 1.11670 1.21714 0.94507 0.97421 0.94045 1.21566 0.93998 0.98804 0.99685 1.21652 1.01478 0.91244 0.93670 1.19753 0.92248 0.96251 1.00644 1.21655 1.00697 0.93039 0.91744 1.68523 1.07695 1.26173 1.17786 1.23947 0.97792 0.90317 0.99201 1.20292 0.92114 0.93569 0.93957 1.21449 1.25929 0.95372 1.14582 0.92043 1.25843 0.95760 1.02403 0.94564 1.70091 1.29942 1.37989 1.18116 0.85639 0.78259 0.80149 0.77806 1.19628 1.21169 1.18976 1.23841 0.94413 0.94235 0.97843 1.21092 0.94912 0.96455 0.96151 0.83983 0.92463 0.91934 0.82083 0.81052 0.82930 0.94269 0.87732 0.91587 0.89465 0.95663 0.92937 0.94156 0.93796 0.87826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.67 16 2 O -0.35 -8.23 9.82 -56.23 -0.55 -8.78 16 3 C 0.51 15.59 7.90 70.33 0.56 16.15 16 4 O -0.54 -20.71 16.14 19.94 0.32 -20.38 16 5 C -0.15 -4.30 5.87 -20.10 -0.12 -4.42 16 6 C -0.06 -1.22 9.62 22.54 0.22 -1.00 16 7 C -0.12 -2.18 10.03 22.23 0.22 -1.96 16 8 C -0.06 -1.37 9.69 22.33 0.22 -1.16 16 9 C -0.09 -2.62 5.43 -19.90 -0.11 -2.73 16 10 C 0.06 1.82 4.92 85.56 0.42 2.24 16 11 N -0.48 -19.05 6.15 -911.59 -5.61 -24.66 16 12 C 0.02 0.63 7.50 86.41 0.65 1.28 16 13 C 0.02 1.02 3.60 -10.89 -0.04 0.98 16 14 C -0.54 -29.76 8.77 25.60 0.22 -29.53 16 15 H 0.06 3.28 7.81 -2.91 -0.02 3.25 16 16 C 0.01 0.77 5.46 84.66 0.46 1.23 16 17 N -0.92 -55.71 13.29 21.45 0.28 -55.42 16 18 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 22 C 0.03 1.26 7.53 86.34 0.65 1.91 16 23 C -0.07 -2.22 9.24 22.54 0.21 -2.01 16 24 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.16 2.43 7.61 -2.91 -0.02 2.40 16 28 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.04 1.35 7.32 -2.39 -0.02 1.34 16 31 H 0.10 2.73 8.02 -2.39 -0.02 2.71 16 32 H 0.07 2.54 7.88 -2.38 -0.02 2.52 16 33 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.04 2.20 7.43 -2.39 -0.02 2.18 16 38 H 0.10 3.98 7.65 -2.91 -0.02 3.96 16 Total: -1.00 -70.57 329.38 2.28 -68.29 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 1.05 Total: 12.08 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 4.76 Total: -17.33 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -5.32 Total: -80.08 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.23 Total: -29.16 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -70.57 2.28 -68.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204637472.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.713 kcal (2) G-P(sol) polarization free energy of solvation -70.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds