Wall clock time and date at job start Mon Mar 30 2020 02:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00117 * 2 1 4 4 H 1.48500 * 109.46925 * 269.99480 * 3 2 1 5 5 H 1.48502 * 109.47011 * 29.99147 * 3 2 1 6 6 H 1.48496 * 109.47504 * 149.99452 * 3 2 1 7 7 C 1.37876 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00020 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00246 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47423 * 180.02562 * 9 7 2 11 11 O 1.42903 * 109.47497 * 180.02562 * 10 9 7 12 12 C 1.42894 * 114.00308 * 179.97438 * 11 10 9 13 13 C 1.53111 * 109.52288 * 209.99893 * 12 11 10 14 14 C 1.53040 * 109.27976 * 182.37628 * 13 12 11 15 15 N 1.46844 * 109.52213 * 59.17809 * 14 13 12 16 16 C 1.46901 * 111.00526 * 174.16367 * 15 14 13 17 17 C 1.52992 * 109.47859 * 170.00090 * 16 15 14 18 18 C 1.52997 * 109.47482 * 179.97438 * 17 16 15 19 19 Cl 1.80300 * 109.47276 * 180.02562 * 18 17 16 20 20 C 1.46848 * 111.20049 * 298.25822 * 15 14 13 21 21 C 1.53045 * 109.52212 * 61.74502 * 20 15 14 22 22 H 0.96998 * 119.99923 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47123 * 60.00191 * 9 7 2 24 24 H 1.08997 * 109.47611 * 300.00195 * 9 7 2 25 25 H 1.08997 * 109.47201 * 60.00195 * 10 9 7 26 26 H 1.08999 * 109.46994 * 300.00084 * 10 9 7 27 27 H 1.09003 * 109.51860 * 330.12656 * 12 11 10 28 28 H 1.08993 * 109.50713 * 62.43591 * 13 12 11 29 29 H 1.08998 * 109.50742 * 302.31798 * 13 12 11 30 30 H 1.09001 * 109.46414 * 299.16653 * 14 13 12 31 31 H 1.08996 * 109.45780 * 179.18574 * 14 13 12 32 32 H 1.09002 * 109.46980 * 49.99749 * 16 15 14 33 33 H 1.09001 * 109.46628 * 290.00171 * 16 15 14 34 34 H 1.09002 * 109.47103 * 59.99734 * 17 16 15 35 35 H 1.08998 * 109.46862 * 300.00546 * 17 16 15 36 36 H 1.09002 * 109.47153 * 59.99783 * 18 17 16 37 37 H 1.09001 * 109.46832 * 299.99974 * 18 17 16 38 38 H 1.09000 * 109.46861 * 181.75554 * 20 15 14 39 39 H 1.08996 * 109.46450 * 301.72736 * 20 15 14 40 40 H 1.08996 * 109.50378 * 180.88718 * 21 20 15 41 41 H 1.08993 * 109.50521 * 60.75626 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 8 1.5308 -4.8997 0.0012 12 6 2.3707 -6.0557 0.0018 13 6 1.6609 -7.2042 -0.7204 14 6 2.5397 -8.4559 -0.6649 15 7 2.7923 -8.8165 0.7360 16 6 3.5168 -10.0910 0.8293 17 6 3.9790 -10.3107 2.2711 18 6 4.7330 -11.6385 2.3683 19 17 5.2770 -11.8977 4.0676 20 6 3.5152 -7.7478 1.4374 21 6 2.6654 -6.4750 1.4447 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6240 -2.5568 0.8902 25 1 2.8712 -3.6040 0.8923 26 1 2.8726 -3.6047 -0.8877 27 1 3.3059 -5.8267 -0.5093 28 1 1.4865 -6.9279 -1.7602 29 1 0.7076 -7.4071 -0.2324 30 1 3.4875 -8.2567 -1.1651 31 1 2.0307 -9.2794 -1.1657 32 1 4.3842 -10.0650 0.1697 33 1 2.8576 -10.9062 0.5308 34 1 3.1116 -10.3367 2.9307 35 1 4.6380 -9.4955 2.5696 36 1 5.6003 -11.6129 1.7086 37 1 4.0734 -12.4534 2.0700 38 1 3.7148 -8.0570 2.4634 39 1 4.4583 -7.5519 0.9273 40 1 3.2088 -5.6776 1.9515 41 1 1.7279 -6.6663 1.9667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205632049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:52 Heat of formation + Delta-G solvation = -78.241666 kcal Electronic energy + Delta-G solvation = -19078.486956 eV Core-core repulsion = 16018.187525 eV Total energy + Delta-G solvation = -3060.299431 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.139 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.53622 -37.32364 -36.41803 -34.34474 -33.13174 -31.33171 -30.90002 -29.52889 -26.05506 -24.55223 -23.81537 -22.71841 -21.11848 -20.84130 -19.74669 -16.90208 -16.32211 -16.11973 -15.43509 -15.23419 -14.90667 -14.73039 -14.48053 -14.21021 -13.78787 -13.51705 -13.17795 -13.01441 -12.52673 -12.25044 -12.15350 -11.80101 -11.49669 -11.30456 -11.21256 -11.13757 -10.95543 -10.84730 -10.76674 -10.70779 -10.50054 -10.19795 -10.10292 -9.45146 -9.19351 -8.80713 -8.53639 -8.35090 -6.02821 -4.06472 1.85523 3.30692 3.36579 3.39727 3.59473 4.19326 4.33527 4.42089 4.48634 4.59425 4.80966 4.85777 4.93357 4.95624 5.16167 5.17569 5.25201 5.33075 5.33344 5.44907 5.57659 5.62034 5.69167 5.70091 5.80294 5.97498 6.05806 6.22886 6.24894 6.39732 6.43687 6.85009 6.88333 6.91073 7.57130 7.80188 7.84760 8.13600 8.36836 9.00172 9.57157 11.08842 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.033373 B = 0.002571 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.811623 B =10886.134327 C =11451.757889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.025 3.975 10 C 0.070 3.930 11 O -0.383 6.383 12 C 0.088 3.912 13 C -0.114 4.114 14 C 0.061 3.939 15 N -0.537 5.537 16 C 0.057 3.943 17 C -0.137 4.137 18 C -0.030 4.030 19 Cl -0.187 7.187 20 C 0.052 3.948 21 C -0.139 4.139 22 H 0.262 0.738 23 H 0.024 0.976 24 H 0.024 0.976 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.033 0.967 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.032 0.968 40 H 0.070 0.930 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.223 -24.246 1.964 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.006 4.006 11 O -0.303 6.303 12 C 0.029 3.971 13 C -0.151 4.151 14 C -0.066 4.066 15 N -0.262 5.262 16 C -0.071 4.071 17 C -0.175 4.175 18 C -0.093 4.093 19 Cl -0.160 7.160 20 C -0.076 4.076 21 C -0.177 4.177 22 H 0.072 0.928 23 H 0.042 0.958 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.454 -24.203 2.316 25.742 hybrid contribution 1.581 1.062 -0.352 1.936 sum 10.035 -23.142 1.964 25.300 Atomic orbital electron populations 1.69982 1.06063 1.26752 1.50159 1.24998 0.94881 0.99286 0.95151 0.86531 0.79759 0.83196 0.78135 1.20586 1.21100 1.19851 1.21053 0.92964 0.90611 1.51569 0.92624 1.19065 0.94246 0.89460 0.98422 1.22897 0.96327 0.83421 0.97964 1.87971 1.33871 1.13610 1.94836 1.21975 0.93479 0.87103 0.94512 1.21632 0.99849 0.92577 1.01089 1.22061 0.98647 0.97941 0.87999 1.62005 1.47305 1.02427 1.14439 1.22045 0.96757 0.92919 0.95401 1.22091 1.01329 0.96058 0.97980 1.24298 1.01475 1.00252 0.83282 1.98731 1.91897 1.97440 1.27982 1.22216 0.94843 0.91294 0.99215 1.22107 1.01205 0.95949 0.98451 0.92845 0.95791 0.95735 0.94823 0.94898 0.93293 0.90825 0.90164 0.94845 0.90368 0.94687 0.90334 0.89517 0.90167 0.89046 0.88791 0.89912 0.94979 0.91179 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.03 0.69 5.34 -27.88 -0.15 0.54 16 10 C 0.07 1.54 5.69 37.16 0.21 1.75 16 11 O -0.38 -7.83 10.00 -35.23 -0.35 -8.18 16 12 C 0.09 1.36 2.67 -26.61 -0.07 1.29 16 13 C -0.11 -1.47 5.75 -26.65 -0.15 -1.63 16 14 C 0.06 0.62 5.42 -3.83 -0.02 0.60 16 15 N -0.54 -5.41 4.81 -234.67 -1.13 -6.54 16 16 C 0.06 0.41 5.27 -3.83 -0.02 0.39 16 17 C -0.14 -0.91 4.59 -26.74 -0.12 -1.03 16 18 C -0.03 -0.16 6.66 37.16 0.25 0.09 16 19 Cl -0.19 -1.50 29.15 -51.86 -1.51 -3.01 16 20 C 0.05 0.56 4.85 -3.83 -0.02 0.54 16 21 C -0.14 -1.91 5.72 -26.64 -0.15 -2.06 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.03 0.72 7.96 -51.93 -0.41 0.30 16 26 H 0.03 0.70 8.09 -51.93 -0.42 0.28 16 27 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 32 H 0.03 0.24 8.08 -51.93 -0.42 -0.18 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.58 6.21 -51.93 -0.32 0.26 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.80 5.81 -51.93 -0.30 0.50 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.99 7.96 -51.93 -0.41 0.57 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 340.26 15.07 5.13 5.13 Total: -1.00 -31.04 340.26 -10.12 -41.15 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -7.31 Total: -5.55 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -0.66 Total: -13.27 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: -0.39 Total: -32.92 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.35 Total: -8.18 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -1.51 Total: -3.01 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.04 -10.12 -41.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.087 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds