Wall clock time and date at job start Mon Mar 30 2020 02:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00117 * 2 1 4 4 H 1.48500 * 109.46925 * 269.99480 * 3 2 1 5 5 H 1.48502 * 109.47011 * 29.99147 * 3 2 1 6 6 H 1.48496 * 109.47504 * 149.99452 * 3 2 1 7 7 C 1.37876 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00020 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00246 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47423 * 180.02562 * 9 7 2 11 11 O 1.42903 * 109.47497 * 180.02562 * 10 9 7 12 12 C 1.42894 * 114.00308 * 179.97438 * 11 10 9 13 13 C 1.53111 * 109.52288 * 209.99893 * 12 11 10 14 14 C 1.53040 * 109.27976 * 182.37628 * 13 12 11 15 15 N 1.46844 * 109.52213 * 59.17809 * 14 13 12 16 16 C 1.46901 * 111.00526 * 174.16367 * 15 14 13 17 17 C 1.52992 * 109.47859 * 170.00090 * 16 15 14 18 18 C 1.52997 * 109.47482 * 179.97438 * 17 16 15 19 19 Cl 1.80300 * 109.47276 * 180.02562 * 18 17 16 20 20 C 1.46848 * 111.20049 * 298.25822 * 15 14 13 21 21 C 1.53045 * 109.52212 * 61.74502 * 20 15 14 22 22 H 0.96998 * 119.99923 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47123 * 60.00191 * 9 7 2 24 24 H 1.08997 * 109.47611 * 300.00195 * 9 7 2 25 25 H 1.08997 * 109.47201 * 60.00195 * 10 9 7 26 26 H 1.08999 * 109.46994 * 300.00084 * 10 9 7 27 27 H 1.09003 * 109.51860 * 330.12656 * 12 11 10 28 28 H 1.08993 * 109.50713 * 62.43591 * 13 12 11 29 29 H 1.08998 * 109.50742 * 302.31798 * 13 12 11 30 30 H 1.09001 * 109.46414 * 299.16653 * 14 13 12 31 31 H 1.08996 * 109.45780 * 179.18574 * 14 13 12 32 32 H 1.09002 * 109.46980 * 49.99749 * 16 15 14 33 33 H 1.09001 * 109.46628 * 290.00171 * 16 15 14 34 34 H 1.09002 * 109.47103 * 59.99734 * 17 16 15 35 35 H 1.08998 * 109.46862 * 300.00546 * 17 16 15 36 36 H 1.09002 * 109.47153 * 59.99783 * 18 17 16 37 37 H 1.09001 * 109.46832 * 299.99974 * 18 17 16 38 38 H 1.09000 * 109.46861 * 181.75554 * 20 15 14 39 39 H 1.08996 * 109.46450 * 301.72736 * 20 15 14 40 40 H 1.08996 * 109.50378 * 180.88718 * 21 20 15 41 41 H 1.08993 * 109.50521 * 60.75626 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 8 1.5308 -4.8997 0.0012 12 6 2.3707 -6.0557 0.0018 13 6 1.6609 -7.2042 -0.7204 14 6 2.5397 -8.4559 -0.6649 15 7 2.7923 -8.8165 0.7360 16 6 3.5168 -10.0910 0.8293 17 6 3.9790 -10.3107 2.2711 18 6 4.7330 -11.6385 2.3683 19 17 5.2770 -11.8977 4.0676 20 6 3.5152 -7.7478 1.4374 21 6 2.6654 -6.4750 1.4447 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6240 -2.5568 0.8902 25 1 2.8712 -3.6040 0.8923 26 1 2.8726 -3.6047 -0.8877 27 1 3.3059 -5.8267 -0.5093 28 1 1.4865 -6.9279 -1.7602 29 1 0.7076 -7.4071 -0.2324 30 1 3.4875 -8.2567 -1.1651 31 1 2.0307 -9.2794 -1.1657 32 1 4.3842 -10.0650 0.1697 33 1 2.8576 -10.9062 0.5308 34 1 3.1116 -10.3367 2.9307 35 1 4.6380 -9.4955 2.5696 36 1 5.6003 -11.6129 1.7086 37 1 4.0734 -12.4534 2.0700 38 1 3.7148 -8.0570 2.4634 39 1 4.4583 -7.5519 0.9273 40 1 3.2088 -5.6776 1.9515 41 1 1.7279 -6.6663 1.9667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205632049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:52 Heat of formation + Delta-G solvation = -97.382750 kcal Electronic energy + Delta-G solvation = -19079.316976 eV Core-core repulsion = 16018.187525 eV Total energy + Delta-G solvation = -3061.129451 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.139 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.52586 -38.59431 -37.02581 -35.60746 -34.83677 -32.51448 -31.90470 -31.23050 -27.08433 -26.27193 -24.67416 -23.72885 -22.84088 -21.77081 -20.77568 -18.75375 -17.59070 -16.99014 -16.63681 -16.56967 -16.33642 -15.96237 -15.55916 -15.10413 -14.71536 -14.70768 -14.36244 -14.06331 -13.72679 -13.63055 -13.26644 -12.98992 -12.93133 -12.64260 -12.54196 -12.26822 -12.22077 -12.13199 -11.98409 -11.57945 -11.50435 -11.39996 -11.32406 -11.28801 -11.20894 -10.63545 -10.27029 -9.27607 -8.24580 -6.38094 1.39107 1.40195 1.42789 1.53955 2.36724 2.83693 2.90956 3.09073 3.76134 3.78883 3.93427 3.95105 4.08198 4.13643 4.25942 4.32831 4.37971 4.42052 4.45281 4.48741 4.52924 4.61715 4.68638 4.75469 4.86645 4.91852 4.96261 5.03876 5.09329 5.19449 5.23591 5.29277 5.38370 5.56532 5.72602 6.07546 6.10765 6.14031 6.47894 6.77854 7.31793 8.88574 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.033373 B = 0.002571 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.811623 B =10886.134327 C =11451.757889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.028 3.972 10 C 0.088 3.912 11 O -0.408 6.408 12 C 0.078 3.922 13 C -0.111 4.111 14 C 0.068 3.932 15 N -0.551 5.551 16 C 0.060 3.940 17 C -0.132 4.132 18 C -0.022 4.022 19 Cl -0.211 7.211 20 C 0.060 3.940 21 C -0.136 4.136 22 H 0.266 0.734 23 H -0.007 1.007 24 H -0.008 1.008 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.099 0.901 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.039 0.961 40 H 0.062 0.938 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.221 -25.207 1.472 27.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.085 0.915 9 C -0.009 4.009 10 C 0.012 3.988 11 O -0.328 6.328 12 C 0.020 3.980 13 C -0.149 4.149 14 C -0.060 4.060 15 N -0.276 5.276 16 C -0.068 4.068 17 C -0.170 4.170 18 C -0.085 4.085 19 Cl -0.185 7.185 20 C -0.067 4.067 21 C -0.174 4.174 22 H 0.075 0.925 23 H 0.012 0.988 24 H 0.011 0.989 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.117 0.883 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.112 0.888 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.465 -25.198 1.823 27.346 hybrid contribution 0.886 1.289 -0.222 1.580 sum 11.351 -23.909 1.601 26.515 Atomic orbital electron populations 1.70129 1.08063 1.28113 1.50879 1.26068 0.95837 1.03726 0.94278 0.85296 0.78552 0.77592 0.78679 1.19475 1.20610 1.18400 1.21464 0.93685 0.91446 1.51764 0.91475 1.18933 0.94627 0.91980 0.95381 1.22460 0.94679 0.82900 0.98774 1.87924 1.35437 1.14313 1.95117 1.22339 0.93488 0.85942 0.96186 1.21628 0.99697 0.93056 1.00469 1.22015 0.98562 0.96936 0.88441 1.61970 1.48145 1.03214 1.14277 1.22092 0.97262 0.91619 0.95808 1.22004 1.00861 0.96593 0.97503 1.24410 1.02273 1.00050 0.81796 1.98734 1.92128 1.97481 1.30193 1.22112 0.94265 0.90078 1.00282 1.22050 1.00988 0.97513 0.96883 0.92516 0.98827 0.98923 0.93957 0.93870 0.92537 0.90810 0.91545 0.93958 0.88300 0.93443 0.88986 0.90631 0.90810 0.87501 0.87187 0.88791 0.94252 0.91969 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.01 13.29 21.45 0.28 -57.73 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.98 44.30 29.54 68.60 2.03 46.33 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.55 -31.74 9.11 25.60 0.23 -31.51 16 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.03 1.59 5.34 29.85 0.16 1.74 16 10 C 0.09 3.96 5.69 71.98 0.41 4.37 16 11 O -0.41 -17.06 10.00 -148.98 -1.49 -18.55 16 12 C 0.08 2.39 2.67 30.67 0.08 2.47 16 13 C -0.11 -2.79 5.75 30.64 0.18 -2.61 16 14 C 0.07 1.22 5.42 86.33 0.47 1.69 16 15 N -0.55 -9.85 4.81 -896.36 -4.31 -14.16 16 16 C 0.06 0.68 5.27 86.30 0.46 1.13 16 17 C -0.13 -1.45 4.59 30.59 0.14 -1.31 16 18 C -0.02 -0.18 6.66 71.98 0.48 0.29 16 19 Cl -0.21 -3.11 29.15 -2.72 -0.08 -3.19 16 20 C 0.06 1.19 4.85 86.33 0.42 1.61 16 21 C -0.14 -3.70 5.72 30.65 0.18 -3.52 16 22 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 23 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 24 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 25 H 0.04 1.81 7.96 -2.39 -0.02 1.79 16 26 H 0.04 1.84 8.09 -2.39 -0.02 1.82 16 27 H 0.06 1.64 7.79 -2.39 -0.02 1.63 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.10 1.40 8.12 -2.39 -0.02 1.38 16 32 H 0.05 0.46 8.08 -2.39 -0.02 0.44 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 0.92 6.21 -2.39 -0.01 0.90 16 36 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.09 1.66 5.81 -2.39 -0.01 1.64 16 39 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.06 1.75 7.96 -2.39 -0.02 1.73 16 41 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -68.24 340.26 1.07 -67.18 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 0.97 Total: 5.34 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 3.66 Total: -25.23 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: -4.02 Total: -71.88 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -1.49 Total: -18.55 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 17 Polarization: -3.11 SS G_CDS: -0.08 Total: -3.19 kcal Total: -68.24 1.07 -67.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.203 kcal (2) G-P(sol) polarization free energy of solvation -68.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds