Wall clock time and date at job start Mon Mar 30 2020 02:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99834 * 2 1 4 4 H 1.48503 * 109.47109 * 270.00180 * 3 2 1 5 5 H 1.48493 * 109.47340 * 29.99983 * 3 2 1 6 6 H 1.48497 * 109.47202 * 150.00329 * 3 2 1 7 7 C 1.37881 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99685 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00231 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47199 * 179.97438 * 10 9 7 12 12 O 1.42899 * 109.47544 * 179.97438 * 11 10 9 13 13 C 1.42895 * 114.00513 * 180.02562 * 12 11 10 14 14 C 1.53120 * 109.52364 * 209.99914 * 13 12 11 15 15 C 1.53041 * 109.27786 * 182.37456 * 14 13 12 16 16 N 1.46845 * 109.52250 * 59.17641 * 15 14 13 17 17 C 1.46902 * 110.99560 * 174.15858 * 16 15 14 18 18 C 1.53006 * 109.46626 * 170.00278 * 17 16 15 19 19 Cl 1.80297 * 109.46708 * 180.02562 * 18 17 16 20 20 C 1.46843 * 111.19965 * 298.25862 * 16 15 14 21 21 C 1.53035 * 109.52382 * 61.74598 * 20 16 15 22 22 H 0.96998 * 120.00186 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.46982 * 59.99558 * 9 7 2 24 24 H 1.09005 * 109.46641 * 299.99713 * 9 7 2 25 25 H 1.09004 * 109.47432 * 59.99997 * 10 9 7 26 26 H 1.08999 * 109.47246 * 299.99819 * 10 9 7 27 27 H 1.09003 * 109.47293 * 59.99837 * 11 10 9 28 28 H 1.08999 * 109.47035 * 300.00146 * 11 10 9 29 29 H 1.09002 * 109.51900 * 330.12232 * 13 12 11 30 30 H 1.09004 * 109.50051 * 62.43521 * 14 13 12 31 31 H 1.09002 * 109.50254 * 302.31585 * 14 13 12 32 32 H 1.09002 * 109.46063 * 299.16475 * 15 14 13 33 33 H 1.08996 * 109.45237 * 179.19039 * 15 14 13 34 34 H 1.09000 * 109.47263 * 50.00584 * 17 16 15 35 35 H 1.09001 * 109.47582 * 289.99863 * 17 16 15 36 36 H 1.08993 * 109.46955 * 300.00347 * 18 17 16 37 37 H 1.09000 * 109.47050 * 60.00176 * 18 17 16 38 38 H 1.09004 * 109.45992 * 181.75809 * 20 16 15 39 39 H 1.08992 * 109.46423 * 301.72296 * 20 16 15 40 40 H 1.08996 * 109.50302 * 180.87813 * 21 20 16 41 41 H 1.08996 * 109.50606 * 60.75768 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 6 5.5516 -2.6364 -0.0035 12 8 6.0280 -3.9836 -0.0040 13 6 7.4525 -4.0965 -0.0046 14 6 7.8637 -5.3826 -0.7266 15 6 9.3862 -5.5279 -0.6723 16 7 9.8255 -5.5696 0.7283 17 6 11.2652 -5.8472 0.8203 18 6 11.7337 -5.6381 2.2617 19 17 13.5007 -5.9781 2.3745 20 6 9.4835 -4.3255 1.4294 21 6 7.9640 -4.1444 1.4379 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6803 0.8888 24 1 3.8745 -0.6799 -0.8912 25 1 3.6579 -3.1497 -0.8925 26 1 3.6587 -3.1509 0.8875 27 1 5.9157 -2.1230 0.8864 28 1 5.9142 -2.1221 -0.8935 29 1 7.8857 -3.2371 -0.5163 30 1 7.5394 -5.3359 -1.7662 31 1 7.3987 -6.2389 -0.2379 32 1 9.8502 -4.6783 -1.1733 33 1 9.6809 -6.4501 -1.1731 34 1 11.8085 -5.1713 0.1599 35 1 11.4563 -6.8781 0.5221 36 1 11.5425 -4.6073 2.5599 37 1 11.1904 -6.3140 2.9220 38 1 9.8492 -4.3744 2.4551 39 1 9.9471 -3.4816 0.9186 40 1 7.7114 -3.2131 1.9447 41 1 7.5007 -4.9811 1.9606 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205673169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:49 Heat of formation + Delta-G solvation = -74.011688 kcal Electronic energy + Delta-G solvation = -19031.070265 eV Core-core repulsion = 15970.954259 eV Total energy + Delta-G solvation = -3060.116006 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.139 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.78319 -37.65301 -36.40290 -34.31000 -33.18842 -31.61278 -31.26965 -29.31037 -27.09049 -24.67578 -23.50066 -22.51317 -21.71605 -20.39274 -19.81437 -17.07934 -16.81452 -16.15800 -15.92196 -15.40642 -15.32320 -14.65069 -14.44351 -14.15964 -14.00047 -13.42281 -13.31651 -12.76534 -12.68236 -12.57409 -12.25116 -12.17063 -11.91679 -11.46462 -11.40744 -11.24253 -10.90912 -10.86342 -10.83505 -10.63704 -10.49434 -10.02078 -9.83247 -9.67442 -9.22796 -9.19922 -8.79439 -8.54937 -6.04840 -4.03073 1.72823 3.29158 3.36536 3.39479 3.48638 3.79346 4.14035 4.32314 4.43829 4.52879 4.62970 4.79617 4.88005 4.91118 5.05562 5.10753 5.27027 5.28480 5.28648 5.31970 5.41529 5.46893 5.56838 5.63448 5.73617 5.82941 6.03463 6.05201 6.11176 6.51880 6.52407 6.56753 6.60804 6.86757 7.26439 7.39744 7.51236 7.78516 8.53846 9.00623 9.56995 11.08601 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.040198 B = 0.002524 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.380901 B =11092.011429 C =11488.046972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.100 4.100 11 C 0.061 3.939 12 O -0.380 6.380 13 C 0.088 3.912 14 C -0.114 4.114 15 C 0.061 3.939 16 N -0.536 5.536 17 C 0.046 3.954 18 C -0.037 4.037 19 Cl -0.183 7.183 20 C 0.048 3.952 21 C -0.139 4.139 22 H 0.263 0.737 23 H 0.016 0.984 24 H 0.011 0.989 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.243 -11.195 2.045 28.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.138 4.138 11 C -0.015 4.015 12 O -0.299 6.299 13 C 0.029 3.971 14 C -0.152 4.152 15 C -0.066 4.066 16 N -0.262 5.262 17 C -0.082 4.082 18 C -0.100 4.100 19 Cl -0.157 7.157 20 C -0.080 4.080 21 C -0.177 4.177 22 H 0.073 0.927 23 H 0.034 0.966 24 H 0.030 0.970 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 25.841 -11.636 2.283 28.432 hybrid contribution 1.003 1.879 -0.368 2.162 sum 26.844 -9.757 1.914 28.627 Atomic orbital electron populations 1.69912 1.06275 1.26881 1.51110 1.25039 0.94760 0.99165 0.94615 0.86766 0.80321 0.83633 0.78478 1.20295 1.21343 1.19085 1.21110 0.89290 0.94588 1.50768 0.90877 1.19516 0.97387 0.91681 0.96245 1.21452 0.89932 1.00031 1.02364 1.22828 0.97368 0.82169 0.99176 1.87952 1.19241 1.27807 1.94932 1.22041 0.82723 0.97492 0.94802 1.21644 0.93998 0.98301 1.01209 1.22072 0.95614 1.01271 0.87676 1.62071 1.13919 1.35260 1.14990 1.22385 0.88172 1.02910 0.94729 1.24583 0.81058 1.04615 0.99724 1.98727 1.21605 1.96635 1.98737 1.22238 0.96652 0.90013 0.99068 1.22101 0.94122 1.03242 0.98259 0.92716 0.96583 0.97041 0.91999 0.91943 0.93987 0.93987 0.92879 0.90567 0.89970 0.94518 0.89965 0.93566 0.89286 0.88547 0.87801 0.90070 0.94520 0.91038 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -15.00 9.66 -34.44 -0.33 -15.34 16 8 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 9 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 10 C -0.10 -2.05 5.52 -26.73 -0.15 -2.20 16 11 C 0.06 1.02 5.75 37.16 0.21 1.23 16 12 O -0.38 -6.04 10.00 -35.23 -0.35 -6.39 16 13 C 0.09 1.05 2.68 -26.61 -0.07 0.98 16 14 C -0.11 -1.15 5.75 -26.65 -0.15 -1.31 16 15 C 0.06 0.50 5.42 -3.83 -0.02 0.48 16 16 N -0.54 -4.33 4.81 -234.67 -1.13 -5.46 16 17 C 0.05 0.30 5.40 -3.82 -0.02 0.28 16 18 C -0.04 -0.22 5.91 37.16 0.22 0.00 16 19 Cl -0.18 -1.37 29.15 -51.86 -1.51 -2.88 16 20 C 0.05 0.39 4.85 -3.84 -0.02 0.37 16 21 C -0.14 -1.46 5.72 -26.65 -0.15 -1.62 16 22 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 23 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 24 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 25 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.04 0.67 7.96 -51.93 -0.41 0.25 16 28 H 0.04 0.67 8.09 -51.93 -0.42 0.25 16 29 H 0.05 0.62 7.79 -51.93 -0.40 0.21 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.05 0.30 8.08 -51.93 -0.42 -0.12 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.51 6.21 -51.93 -0.32 0.19 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.55 5.81 -51.93 -0.30 0.25 16 39 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.76 7.96 -51.93 -0.41 0.35 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 336.66 15.07 5.07 5.07 Total: -1.00 -30.88 336.66 -9.78 -40.66 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -7.27 Total: -5.13 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -0.69 Total: -15.67 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: -0.35 Total: -32.71 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.35 Total: -6.39 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -1.51 Total: -2.88 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.88 -9.78 -40.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205673169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.349 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds