Wall clock time and date at job start Mon Mar 30 2020 02:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99834 * 2 1 4 4 H 1.48503 * 109.47109 * 270.00180 * 3 2 1 5 5 H 1.48493 * 109.47340 * 29.99983 * 3 2 1 6 6 H 1.48497 * 109.47202 * 150.00329 * 3 2 1 7 7 C 1.37881 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99685 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00231 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47199 * 179.97438 * 10 9 7 12 12 O 1.42899 * 109.47544 * 179.97438 * 11 10 9 13 13 C 1.42895 * 114.00513 * 180.02562 * 12 11 10 14 14 C 1.53120 * 109.52364 * 209.99914 * 13 12 11 15 15 C 1.53041 * 109.27786 * 182.37456 * 14 13 12 16 16 N 1.46845 * 109.52250 * 59.17641 * 15 14 13 17 17 C 1.46902 * 110.99560 * 174.15858 * 16 15 14 18 18 C 1.53006 * 109.46626 * 170.00278 * 17 16 15 19 19 Cl 1.80297 * 109.46708 * 180.02562 * 18 17 16 20 20 C 1.46843 * 111.19965 * 298.25862 * 16 15 14 21 21 C 1.53035 * 109.52382 * 61.74598 * 20 16 15 22 22 H 0.96998 * 120.00186 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.46982 * 59.99558 * 9 7 2 24 24 H 1.09005 * 109.46641 * 299.99713 * 9 7 2 25 25 H 1.09004 * 109.47432 * 59.99997 * 10 9 7 26 26 H 1.08999 * 109.47246 * 299.99819 * 10 9 7 27 27 H 1.09003 * 109.47293 * 59.99837 * 11 10 9 28 28 H 1.08999 * 109.47035 * 300.00146 * 11 10 9 29 29 H 1.09002 * 109.51900 * 330.12232 * 13 12 11 30 30 H 1.09004 * 109.50051 * 62.43521 * 14 13 12 31 31 H 1.09002 * 109.50254 * 302.31585 * 14 13 12 32 32 H 1.09002 * 109.46063 * 299.16475 * 15 14 13 33 33 H 1.08996 * 109.45237 * 179.19039 * 15 14 13 34 34 H 1.09000 * 109.47263 * 50.00584 * 17 16 15 35 35 H 1.09001 * 109.47582 * 289.99863 * 17 16 15 36 36 H 1.08993 * 109.46955 * 300.00347 * 18 17 16 37 37 H 1.09000 * 109.47050 * 60.00176 * 18 17 16 38 38 H 1.09004 * 109.45992 * 181.75809 * 20 16 15 39 39 H 1.08992 * 109.46423 * 301.72296 * 20 16 15 40 40 H 1.08996 * 109.50302 * 180.87813 * 21 20 16 41 41 H 1.08996 * 109.50606 * 60.75768 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 6 5.5516 -2.6364 -0.0035 12 8 6.0280 -3.9836 -0.0040 13 6 7.4525 -4.0965 -0.0046 14 6 7.8637 -5.3826 -0.7266 15 6 9.3862 -5.5279 -0.6723 16 7 9.8255 -5.5696 0.7283 17 6 11.2652 -5.8472 0.8203 18 6 11.7337 -5.6381 2.2617 19 17 13.5007 -5.9781 2.3745 20 6 9.4835 -4.3255 1.4294 21 6 7.9640 -4.1444 1.4379 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6803 0.8888 24 1 3.8745 -0.6799 -0.8912 25 1 3.6579 -3.1497 -0.8925 26 1 3.6587 -3.1509 0.8875 27 1 5.9157 -2.1230 0.8864 28 1 5.9142 -2.1221 -0.8935 29 1 7.8857 -3.2371 -0.5163 30 1 7.5394 -5.3359 -1.7662 31 1 7.3987 -6.2389 -0.2379 32 1 9.8502 -4.6783 -1.1733 33 1 9.6809 -6.4501 -1.1731 34 1 11.8085 -5.1713 0.1599 35 1 11.4563 -6.8781 0.5221 36 1 11.5425 -4.6073 2.5599 37 1 11.1904 -6.3140 2.9220 38 1 9.8492 -4.3744 2.4551 39 1 9.9471 -3.4816 0.9186 40 1 7.7114 -3.2131 1.9447 41 1 7.5007 -4.9811 1.9606 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205673169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:49 Heat of formation + Delta-G solvation = -93.443508 kcal Electronic energy + Delta-G solvation = -19031.912892 eV Core-core repulsion = 15970.954259 eV Total energy + Delta-G solvation = -3060.958633 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.139 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.56251 -38.66572 -36.97492 -35.96025 -34.41499 -33.37852 -31.99815 -30.08694 -28.79317 -25.41555 -24.70719 -23.78548 -22.40846 -21.93655 -20.77369 -18.96167 -17.90275 -17.15753 -16.82908 -16.31689 -16.24117 -15.96779 -15.56003 -15.22649 -14.99815 -14.76537 -14.21332 -14.15241 -13.89883 -13.60599 -13.30564 -13.07231 -12.89526 -12.77686 -12.52038 -12.19352 -12.17252 -12.07927 -11.82416 -11.66516 -11.56633 -11.39017 -11.37104 -11.30526 -11.20761 -10.77271 -10.34188 -9.38105 -8.29773 -6.35156 1.24000 1.36584 1.39082 1.51076 2.36484 2.68336 2.91494 3.05025 3.61879 3.77864 3.83913 3.92939 4.04736 4.15989 4.20996 4.29570 4.31486 4.35647 4.39356 4.53922 4.58570 4.64483 4.75777 4.79075 4.84238 4.85507 4.86602 4.95392 5.02026 5.05109 5.22843 5.28743 5.46205 5.54789 5.63544 5.97442 5.98880 6.26101 6.38342 6.73075 7.29181 8.87229 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.040198 B = 0.002524 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.380901 B =11092.011429 C =11488.046972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.000 4.000 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.242 1.242 7 C -0.537 4.537 8 H 0.028 0.972 9 C -0.007 4.007 10 C -0.095 4.095 11 C 0.073 3.927 12 O -0.401 6.401 13 C 0.080 3.920 14 C -0.110 4.110 15 C 0.066 3.934 16 N -0.546 5.546 17 C 0.050 3.950 18 C -0.031 4.031 19 Cl -0.197 7.197 20 C 0.052 3.948 21 C -0.136 4.136 22 H 0.267 0.733 23 H 0.026 0.974 24 H 0.024 0.976 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.095 0.905 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.217 -10.160 2.074 31.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.165 1.165 7 C -0.575 4.575 8 H 0.046 0.954 9 C -0.044 4.044 10 C -0.133 4.133 11 C -0.004 4.004 12 O -0.321 6.321 13 C 0.022 3.978 14 C -0.148 4.148 15 C -0.062 4.062 16 N -0.272 5.272 17 C -0.077 4.077 18 C -0.094 4.094 19 Cl -0.171 7.171 20 C -0.076 4.076 21 C -0.174 4.174 22 H 0.076 0.924 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.115 0.885 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 28.840 -10.629 2.311 30.823 hybrid contribution -0.005 1.430 -0.382 1.481 sum 28.835 -9.198 1.929 30.328 Atomic orbital electron populations 1.70078 1.08446 1.28289 1.52471 1.26112 0.95727 1.03854 0.93959 0.85566 0.79548 0.77634 0.79338 1.18972 1.20959 1.16536 1.21472 0.92144 0.93124 1.50754 0.95392 1.19433 0.93925 0.94036 0.97008 1.21270 0.93187 0.97697 1.01152 1.22539 0.94308 0.83093 1.00430 1.87912 1.21928 1.27096 1.95191 1.22331 0.80570 0.98691 0.96196 1.21624 0.95593 0.96836 1.00790 1.22038 0.93857 1.02267 0.88016 1.62043 1.14970 1.35253 1.14930 1.22360 0.87122 1.03143 0.95125 1.24615 0.80012 1.05256 0.99494 1.98730 1.22877 1.96715 1.98742 1.22214 0.94811 0.90362 1.00185 1.22051 0.95812 1.02611 0.96962 0.92424 0.95593 0.95739 0.93271 0.93292 0.92697 0.92646 0.92001 0.90531 0.91277 0.93819 0.88672 0.93271 0.89023 0.87670 0.87396 0.88525 0.93861 0.91166 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.56 13.96 21.45 0.30 -60.26 16 2 C 0.00 0.00 5.47 84.66 0.46 0.46 16 3 Si 0.96 43.95 27.47 68.60 1.88 45.83 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 7 C -0.54 -31.71 9.66 25.60 0.25 -31.46 16 8 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 9 C -0.01 -0.31 4.04 29.85 0.12 -0.19 16 10 C -0.10 -3.90 5.52 30.59 0.17 -3.73 16 11 C 0.07 2.31 5.75 71.98 0.41 2.73 16 12 O -0.40 -12.36 10.00 -148.98 -1.49 -13.85 16 13 C 0.08 1.78 2.68 30.68 0.08 1.86 16 14 C -0.11 -2.09 5.75 30.65 0.18 -1.92 16 15 C 0.07 0.91 5.42 86.33 0.47 1.38 16 16 N -0.55 -7.51 4.81 -896.36 -4.31 -11.81 16 17 C 0.05 0.52 5.40 86.31 0.47 0.99 16 18 C -0.03 -0.29 5.91 71.98 0.43 0.13 16 19 Cl -0.20 -2.60 29.15 -2.72 -0.08 -2.68 16 20 C 0.05 0.71 4.85 86.33 0.42 1.13 16 21 C -0.14 -2.63 5.72 30.65 0.18 -2.46 16 22 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 23 H 0.03 1.17 7.20 -2.39 -0.02 1.15 16 24 H 0.02 1.09 7.57 -2.38 -0.02 1.07 16 25 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.05 1.61 7.96 -2.39 -0.02 1.59 16 28 H 0.06 1.62 8.09 -2.39 -0.02 1.60 16 29 H 0.06 1.28 7.79 -2.39 -0.02 1.26 16 30 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 1.09 8.12 -2.39 -0.02 1.07 16 34 H 0.05 0.51 8.08 -2.39 -0.02 0.49 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.11 0.82 6.21 -2.39 -0.01 0.81 16 37 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.10 1.04 5.81 -2.38 -0.01 1.02 16 39 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.07 1.36 7.96 -2.39 -0.02 1.34 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -67.53 336.66 0.85 -66.68 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 0.92 Total: 7.15 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: 3.63 Total: -31.07 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: -4.01 Total: -72.08 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -1.49 Total: -13.85 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.83 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -0.08 Total: -2.68 kcal Total: -67.53 0.85 -66.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205673169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.763 kcal (2) G-P(sol) polarization free energy of solvation -67.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds