Wall clock time and date at job start Mon Mar 30 2020 01:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86799 * 119.99846 * 2 1 4 4 H 1.48498 * 109.46871 * 264.99158 * 3 2 1 5 5 H 1.48507 * 109.47179 * 24.98840 * 3 2 1 6 6 H 1.48498 * 109.47589 * 144.99181 * 3 2 1 7 7 C 1.39929 * 120.00452 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00413 * 147.82484 * 7 2 1 9 9 C 1.41417 * 119.99746 * 327.82526 * 7 2 1 10 10 C 1.40769 * 120.20984 * 339.08737 * 9 7 2 11 11 C 1.37646 * 119.88236 * 179.72183 * 10 9 7 12 12 C 1.38529 * 120.32176 * 0.51264 * 11 10 9 13 13 C 1.39245 * 120.42853 * 359.48763 * 12 11 10 14 14 N 1.39938 * 119.94410 * 180.22814 * 13 12 11 15 15 C 1.34784 * 119.99345 * 142.64666 * 14 13 12 16 16 O 1.21280 * 120.00173 * 4.11874 * 15 14 13 17 17 C 1.50701 * 119.99681 * 184.12762 * 15 14 13 18 18 N 1.46905 * 110.28776 * 32.86668 * 17 15 14 19 19 C 1.54255 * 110.32495 * 154.99652 * 17 15 14 20 20 C 1.54372 * 105.06223 * 118.89493 * 19 17 15 21 21 N 1.48567 * 104.59451 * 23.85218 * 20 19 17 22 22 C 1.48559 * 104.22032 * 320.51669 * 21 20 19 23 23 C 1.38281 * 120.10713 * 0.25292 * 13 12 11 24 24 H 0.96998 * 120.00821 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.06119 * 359.97438 * 10 9 7 26 26 H 1.08008 * 119.83864 * 180.25391 * 11 10 9 27 27 H 1.07998 * 119.78455 * 179.75931 * 12 11 10 28 28 H 0.96997 * 120.00387 * 322.64475 * 14 13 12 29 29 H 1.00894 * 111.00131 * 300.70050 * 18 17 15 30 30 H 1.00905 * 111.00005 * 64.65781 * 18 17 15 31 31 H 1.09005 * 110.32318 * 237.79059 * 19 17 15 32 32 H 1.08997 * 110.32524 * 359.89251 * 19 17 15 33 33 H 1.09004 * 110.41465 * 142.63057 * 20 19 17 34 34 H 1.08997 * 110.41464 * 264.95721 * 20 19 17 35 35 H 1.00904 * 110.99880 * 200.95786 * 21 20 19 36 36 H 1.08997 * 110.41307 * 280.70311 * 22 21 20 37 37 H 1.09000 * 110.40932 * 158.25817 * 22 21 20 38 38 H 1.07991 * 120.16448 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.5955 1.9853 -1.3947 5 1 1.3906 2.6810 0.5915 6 1 3.4828 1.4732 0.8032 7 6 2.0080 -1.2118 0.0005 8 1 2.9635 -1.2838 -0.4974 9 6 1.4638 -2.3421 0.6532 10 6 0.4829 -2.1806 1.6499 11 6 -0.0463 -3.2858 2.2768 12 6 0.3893 -4.5568 1.9393 13 6 1.3589 -4.7319 0.9554 14 7 1.7881 -6.0207 0.6191 15 6 2.0693 -6.3239 -0.6637 16 8 2.0227 -5.4614 -1.5150 17 6 2.4415 -7.7349 -1.0402 18 7 1.7326 -8.6946 -0.1832 19 6 2.1133 -7.9977 -2.5244 20 6 3.4689 -8.3351 -3.1813 21 7 4.3151 -8.8255 -2.0630 22 6 3.9678 -7.9356 -0.9252 23 6 1.8988 -3.6343 0.3105 24 1 -0.4851 0.8400 -0.0004 25 1 0.1432 -1.1915 1.9193 26 1 -0.8019 -3.1613 3.0385 27 1 -0.0291 -5.4177 2.4395 28 1 1.8832 -6.6957 1.3091 29 1 1.9582 -8.5467 0.7890 30 1 0.7360 -8.6471 -0.3344 31 1 1.4276 -8.8400 -2.6171 32 1 1.6813 -7.1068 -2.9801 33 1 3.3436 -9.1143 -3.9332 34 1 3.9070 -7.4430 -3.6289 35 1 5.2951 -8.7533 -2.2925 36 1 4.4849 -6.9806 -1.0179 37 1 4.2181 -8.4141 0.0217 38 1 2.6506 -3.7690 -0.4530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218987353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:34 Heat of formation + Delta-G solvation = -4.791795 kcal Electronic energy + Delta-G solvation = -21096.974622 eV Core-core repulsion = 17938.752723 eV Total energy + Delta-G solvation = -3158.221900 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48646 -38.17720 -36.85667 -34.69151 -33.72512 -32.81810 -29.92560 -29.49243 -28.33771 -27.42213 -25.34745 -22.97052 -21.85741 -21.01967 -20.56306 -19.11396 -18.00802 -17.38394 -16.32893 -15.79242 -15.52676 -15.13847 -14.85541 -14.79121 -14.51138 -13.94968 -13.57683 -13.11840 -12.94679 -12.58491 -12.29394 -12.22729 -11.73796 -11.54858 -11.48426 -11.31113 -11.12003 -11.06944 -10.84424 -10.61482 -10.41816 -9.86406 -9.76150 -9.38257 -8.91616 -8.74284 -8.51270 -7.57166 -7.02820 -6.93525 -4.34968 2.49655 2.78887 3.04347 3.06109 3.14043 3.24484 3.40978 3.89448 4.19171 4.25071 4.46384 4.51789 4.61309 4.96364 5.17908 5.41254 5.47527 5.61039 5.64049 5.76060 5.90203 6.00223 6.18289 6.35344 6.46998 6.65105 6.81406 6.96505 6.99139 7.03471 7.10287 7.12688 7.18486 7.48453 7.67110 7.89605 8.00708 8.09444 8.17198 8.50818 8.63885 8.85347 8.92914 10.03749 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024994 B = 0.004526 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.988615 B = 6184.748223 C = 6902.386514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.089 3.911 3 Si 0.897 3.103 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.465 4.465 8 H 0.080 0.920 9 C 0.123 3.877 10 C -0.188 4.188 11 C -0.083 4.083 12 C -0.273 4.273 13 C 0.152 3.848 14 N -0.667 5.667 15 C 0.475 3.525 16 O -0.508 6.508 17 C 0.104 3.896 18 N -0.817 5.817 19 C -0.108 4.108 20 C 0.039 3.961 21 N -0.654 5.654 22 C 0.056 3.944 23 C -0.215 4.215 24 H 0.283 0.717 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.394 0.606 29 H 0.339 0.661 30 H 0.348 0.652 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.336 0.664 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.292 -11.956 -0.394 12.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.133 4.133 3 Si 0.721 3.279 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.492 4.492 8 H 0.099 0.901 9 C 0.119 3.881 10 C -0.208 4.208 11 C -0.102 4.102 12 C -0.294 4.294 13 C 0.061 3.939 14 N -0.312 5.312 15 C 0.258 3.742 16 O -0.380 6.380 17 C 0.007 3.993 18 N -0.350 5.350 19 C -0.146 4.146 20 C -0.091 4.091 21 N -0.282 5.282 22 C -0.074 4.074 23 C -0.236 4.236 24 H 0.094 0.906 25 H 0.124 0.876 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.228 0.772 29 H 0.153 0.847 30 H 0.162 0.838 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.151 0.849 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.036 -12.370 -1.275 13.074 hybrid contribution 0.194 2.183 0.592 2.270 sum 4.230 -10.187 -0.683 11.052 Atomic orbital electron populations 1.69932 1.08113 1.29899 1.31142 1.25926 0.94345 1.01499 0.91558 0.86510 0.81174 0.80588 0.79653 1.19244 1.19989 1.18203 1.19497 1.05317 0.93645 1.30780 0.90149 1.17433 0.89739 0.91299 0.89590 1.21088 1.02876 0.97102 0.99696 1.20394 0.98467 0.92585 0.98798 1.19964 1.05571 0.96433 1.07423 1.17451 0.96304 0.82154 0.97980 1.43489 1.66586 1.12842 1.08304 1.21658 0.78103 0.91659 0.82812 1.90757 1.49312 1.49102 1.48857 1.21775 0.95628 0.86083 0.95853 1.58923 1.13153 1.53211 1.09684 1.22360 0.98032 1.03034 0.91224 1.22888 0.93292 0.98768 0.94128 1.63725 1.09340 1.50579 1.04556 1.22821 0.92057 0.95726 0.96811 1.20904 1.06862 0.90938 1.04879 0.90564 0.87565 0.89088 0.89426 0.77207 0.84662 0.83838 0.89753 0.89248 0.89866 0.93715 0.84896 0.93253 0.89100 0.87596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.99 11.69 55.55 0.65 -19.34 16 2 C 0.09 2.25 4.80 -17.35 -0.08 2.16 16 3 Si 0.90 18.58 29.66 -169.99 -5.04 13.54 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.69 8.96 -37.74 -0.34 -13.03 16 8 H 0.08 2.15 8.01 -52.49 -0.42 1.73 16 9 C 0.12 3.36 5.58 -106.85 -0.60 2.76 16 10 C -0.19 -4.91 8.79 -38.84 -0.34 -5.25 16 11 C -0.08 -1.94 10.02 -39.69 -0.40 -2.34 16 12 C -0.27 -5.97 9.97 -39.10 -0.39 -6.36 16 13 C 0.15 3.43 6.25 -83.77 -0.52 2.91 16 14 N -0.67 -11.58 5.21 -9.91 -0.05 -11.63 16 15 C 0.47 8.36 6.46 -10.98 -0.07 8.29 16 16 O -0.51 -11.38 13.20 5.56 0.07 -11.30 16 17 C 0.10 1.37 1.19 -131.37 -0.16 1.21 16 18 N -0.82 -8.76 8.67 0.93 0.01 -8.75 16 19 C -0.11 -1.40 6.27 -25.36 -0.16 -1.56 16 20 C 0.04 0.44 7.47 -2.18 -0.02 0.42 16 21 N -0.65 -7.29 7.62 -109.66 -0.84 -8.12 16 22 C 0.06 0.68 6.72 -2.18 -0.01 0.67 16 23 C -0.21 -5.57 8.42 -38.68 -0.33 -5.89 16 24 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 25 H 0.11 2.81 6.45 -52.49 -0.34 2.48 16 26 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 27 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.39 5.25 7.26 -40.82 -0.30 4.96 16 29 H 0.34 3.10 7.52 -39.30 -0.30 2.80 16 30 H 0.35 3.58 9.03 -39.29 -0.35 3.23 16 31 H 0.08 1.00 7.95 -51.93 -0.41 0.59 16 32 H 0.09 1.35 6.77 -51.93 -0.35 1.00 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.34 3.10 8.92 -39.29 -0.35 2.75 16 36 H 0.05 0.65 7.85 -51.93 -0.41 0.25 16 37 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 38 H 0.11 2.85 6.40 -52.49 -0.34 2.51 16 LS Contribution 313.18 15.07 4.72 4.72 Total: -1.00 -30.98 313.18 -8.70 -39.68 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -4.81 Total: 17.22 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -3.41 Total: -16.00 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.23 Total: -47.85 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.07 Total: -11.30 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.04 Total: 13.54 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.98 -8.70 -39.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218987353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.884 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds