Wall clock time and date at job start Mon Mar 30 2020 01:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86799 * 119.99846 * 2 1 4 4 H 1.48498 * 109.46871 * 264.99158 * 3 2 1 5 5 H 1.48507 * 109.47179 * 24.98840 * 3 2 1 6 6 H 1.48498 * 109.47589 * 144.99181 * 3 2 1 7 7 C 1.39929 * 120.00452 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00413 * 147.82484 * 7 2 1 9 9 C 1.41417 * 119.99746 * 327.82526 * 7 2 1 10 10 C 1.40769 * 120.20984 * 339.08737 * 9 7 2 11 11 C 1.37646 * 119.88236 * 179.72183 * 10 9 7 12 12 C 1.38529 * 120.32176 * 0.51264 * 11 10 9 13 13 C 1.39245 * 120.42853 * 359.48763 * 12 11 10 14 14 N 1.39938 * 119.94410 * 180.22814 * 13 12 11 15 15 C 1.34784 * 119.99345 * 142.64666 * 14 13 12 16 16 O 1.21280 * 120.00173 * 4.11874 * 15 14 13 17 17 C 1.50701 * 119.99681 * 184.12762 * 15 14 13 18 18 N 1.46905 * 110.28776 * 32.86668 * 17 15 14 19 19 C 1.54255 * 110.32495 * 154.99652 * 17 15 14 20 20 C 1.54372 * 105.06223 * 118.89493 * 19 17 15 21 21 N 1.48567 * 104.59451 * 23.85218 * 20 19 17 22 22 C 1.48559 * 104.22032 * 320.51669 * 21 20 19 23 23 C 1.38281 * 120.10713 * 0.25292 * 13 12 11 24 24 H 0.96998 * 120.00821 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.06119 * 359.97438 * 10 9 7 26 26 H 1.08008 * 119.83864 * 180.25391 * 11 10 9 27 27 H 1.07998 * 119.78455 * 179.75931 * 12 11 10 28 28 H 0.96997 * 120.00387 * 322.64475 * 14 13 12 29 29 H 1.00894 * 111.00131 * 300.70050 * 18 17 15 30 30 H 1.00905 * 111.00005 * 64.65781 * 18 17 15 31 31 H 1.09005 * 110.32318 * 237.79059 * 19 17 15 32 32 H 1.08997 * 110.32524 * 359.89251 * 19 17 15 33 33 H 1.09004 * 110.41465 * 142.63057 * 20 19 17 34 34 H 1.08997 * 110.41464 * 264.95721 * 20 19 17 35 35 H 1.00904 * 110.99880 * 200.95786 * 21 20 19 36 36 H 1.08997 * 110.41307 * 280.70311 * 22 21 20 37 37 H 1.09000 * 110.40932 * 158.25817 * 22 21 20 38 38 H 1.07991 * 120.16448 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.5955 1.9853 -1.3947 5 1 1.3906 2.6810 0.5915 6 1 3.4828 1.4732 0.8032 7 6 2.0080 -1.2118 0.0005 8 1 2.9635 -1.2838 -0.4974 9 6 1.4638 -2.3421 0.6532 10 6 0.4829 -2.1806 1.6499 11 6 -0.0463 -3.2858 2.2768 12 6 0.3893 -4.5568 1.9393 13 6 1.3589 -4.7319 0.9554 14 7 1.7881 -6.0207 0.6191 15 6 2.0693 -6.3239 -0.6637 16 8 2.0227 -5.4614 -1.5150 17 6 2.4415 -7.7349 -1.0402 18 7 1.7326 -8.6946 -0.1832 19 6 2.1133 -7.9977 -2.5244 20 6 3.4689 -8.3351 -3.1813 21 7 4.3151 -8.8255 -2.0630 22 6 3.9678 -7.9356 -0.9252 23 6 1.8988 -3.6343 0.3105 24 1 -0.4851 0.8400 -0.0004 25 1 0.1432 -1.1915 1.9193 26 1 -0.8019 -3.1613 3.0385 27 1 -0.0291 -5.4177 2.4395 28 1 1.8832 -6.6957 1.3091 29 1 1.9582 -8.5467 0.7890 30 1 0.7360 -8.6471 -0.3344 31 1 1.4276 -8.8400 -2.6171 32 1 1.6813 -7.1068 -2.9801 33 1 3.3436 -9.1143 -3.9332 34 1 3.9070 -7.4430 -3.6289 35 1 5.2951 -8.7533 -2.2925 36 1 4.4849 -6.9806 -1.0179 37 1 4.2181 -8.4141 0.0217 38 1 2.6506 -3.7690 -0.4530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218987353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:34 Heat of formation + Delta-G solvation = -29.687397 kcal Electronic energy + Delta-G solvation = -21098.054177 eV Core-core repulsion = 17938.752723 eV Total energy + Delta-G solvation = -3159.301454 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.86381 -39.64977 -38.40758 -36.37999 -35.23598 -34.18616 -31.84924 -30.51874 -30.00198 -28.51448 -27.29511 -24.43841 -22.94459 -22.80703 -22.17187 -20.47459 -19.66055 -18.80443 -17.54431 -17.29910 -16.89345 -16.61453 -16.56773 -16.09952 -16.00031 -15.21444 -15.10512 -14.72084 -14.51449 -14.11011 -13.64848 -13.53505 -13.35910 -13.17410 -12.87006 -12.65552 -12.50895 -12.37227 -12.28332 -12.11515 -12.07789 -11.67329 -11.43303 -11.14763 -10.75166 -9.78218 -9.62596 -9.50216 -8.86376 -8.82837 -6.37779 0.78178 0.96048 1.32377 1.40675 1.49925 1.61486 2.00068 2.16302 2.57981 3.20279 3.26682 3.45033 3.62286 3.65700 3.80138 4.20633 4.40424 4.41216 4.49292 4.59405 4.68593 4.82828 4.87016 4.93423 5.01030 5.04943 5.06091 5.16990 5.24116 5.52604 5.64839 5.79286 5.93119 5.99882 6.03164 6.26627 6.29435 6.36954 6.51705 6.59717 6.85033 6.95405 7.17693 8.17289 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024994 B = 0.004526 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.988615 B = 6184.748223 C = 6902.386514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.051 3.949 3 Si 0.975 3.025 4 H -0.261 1.261 5 H -0.257 1.257 6 H -0.259 1.259 7 C -0.511 4.511 8 H 0.066 0.934 9 C 0.093 3.907 10 C -0.213 4.213 11 C -0.083 4.083 12 C -0.261 4.261 13 C 0.159 3.841 14 N -0.654 5.654 15 C 0.472 3.528 16 O -0.561 6.561 17 C 0.118 3.882 18 N -0.805 5.805 19 C -0.111 4.111 20 C 0.040 3.960 21 N -0.648 5.648 22 C 0.057 3.943 23 C -0.244 4.244 24 H 0.294 0.706 25 H 0.093 0.907 26 H 0.124 0.876 27 H 0.132 0.868 28 H 0.417 0.583 29 H 0.352 0.648 30 H 0.354 0.646 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.035 0.965 35 H 0.349 0.651 36 H 0.031 0.969 37 H 0.111 0.889 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.172 -13.852 0.803 14.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.168 4.168 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.181 1.181 6 H -0.183 1.183 7 C -0.539 4.539 8 H 0.084 0.916 9 C 0.090 3.910 10 C -0.233 4.233 11 C -0.102 4.102 12 C -0.281 4.281 13 C 0.066 3.934 14 N -0.301 5.301 15 C 0.258 3.742 16 O -0.436 6.436 17 C 0.020 3.980 18 N -0.338 5.338 19 C -0.150 4.150 20 C -0.089 4.089 21 N -0.278 5.278 22 C -0.073 4.073 23 C -0.266 4.266 24 H 0.105 0.895 25 H 0.111 0.889 26 H 0.142 0.858 27 H 0.150 0.850 28 H 0.255 0.745 29 H 0.167 0.833 30 H 0.168 0.832 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.053 0.947 35 H 0.165 0.835 36 H 0.050 0.950 37 H 0.129 0.871 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.920 -14.329 -0.044 14.855 hybrid contribution 0.180 2.598 0.228 2.614 sum 4.099 -11.731 0.184 12.428 Atomic orbital electron populations 1.69932 1.09499 1.31490 1.31541 1.26755 0.95088 1.04553 0.90409 0.85362 0.79571 0.75811 0.79869 1.18561 1.18091 1.18301 1.19686 1.05587 0.95632 1.33005 0.91584 1.17781 0.90725 0.92038 0.90433 1.21082 1.03847 0.97701 1.00673 1.20797 0.98399 0.92292 0.98684 1.20417 1.04054 0.97416 1.06249 1.17542 0.95470 0.83394 0.97002 1.43359 1.65979 1.11492 1.09232 1.22698 0.76381 0.93137 0.82017 1.90748 1.51317 1.51229 1.50355 1.21685 0.96692 0.83157 0.96457 1.58929 1.13465 1.51204 1.10235 1.22379 0.99223 1.02349 0.91016 1.22908 0.92363 0.99142 0.94534 1.63751 1.10286 1.49701 1.04017 1.22833 0.90821 0.95418 0.98235 1.20861 1.07858 0.92084 1.05791 0.89475 0.88853 0.85824 0.85010 0.74453 0.83262 0.83180 0.88177 0.92012 0.87784 0.94680 0.83474 0.95024 0.87126 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.98 11.69 21.82 0.26 -42.73 16 2 C 0.05 2.68 4.80 85.25 0.41 3.09 16 3 Si 0.97 39.12 29.66 68.60 2.03 41.15 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.51 -29.66 8.96 23.46 0.21 -29.45 16 8 H 0.07 3.83 8.01 -2.91 -0.02 3.81 16 9 C 0.09 5.37 5.58 -21.31 -0.12 5.25 16 10 C -0.21 -11.41 8.79 22.75 0.20 -11.21 16 11 C -0.08 -3.75 10.02 22.20 0.22 -3.53 16 12 C -0.26 -10.78 9.97 22.58 0.23 -10.56 16 13 C 0.16 7.09 6.25 38.10 0.24 7.33 16 14 N -0.65 -21.84 5.21 -303.65 -1.58 -23.42 16 15 C 0.47 16.59 6.46 87.66 0.57 17.15 16 16 O -0.56 -26.27 13.20 -3.03 -0.04 -26.31 16 17 C 0.12 2.92 1.19 3.67 0.00 2.93 16 18 N -0.80 -14.71 8.67 -150.97 -1.31 -16.02 16 19 C -0.11 -2.77 6.27 31.49 0.20 -2.58 16 20 C 0.04 0.86 7.47 86.45 0.65 1.50 16 21 N -0.65 -13.01 7.62 -500.85 -3.82 -16.83 16 22 C 0.06 1.29 6.72 86.45 0.58 1.87 16 23 C -0.24 -13.28 8.42 22.85 0.19 -13.08 16 24 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 25 H 0.09 5.12 6.45 -2.91 -0.02 5.10 16 26 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 27 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 28 H 0.42 9.87 7.26 -92.71 -0.67 9.19 16 29 H 0.35 5.06 7.52 -89.70 -0.67 4.39 16 30 H 0.35 6.14 9.03 -89.69 -0.81 5.33 16 31 H 0.10 2.16 7.95 -2.38 -0.02 2.14 16 32 H 0.06 1.91 6.77 -2.39 -0.02 1.89 16 33 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.35 5.70 8.92 -89.69 -0.80 4.90 16 36 H 0.03 0.83 7.85 -2.39 -0.02 0.81 16 37 H 0.11 2.06 8.05 -2.39 -0.02 2.04 16 38 H 0.08 4.74 6.40 -2.92 -0.02 4.72 16 Total: -1.00 -71.45 313.18 -2.71 -74.16 By element: Atomic # 1 Polarization: 43.11 SS G_CDS: -1.83 Total: 41.28 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 3.57 Total: -31.29 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -6.45 Total: -99.00 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.04 Total: -26.31 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -71.45 -2.71 -74.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218987353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.477 kcal (2) G-P(sol) polarization free energy of solvation -71.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds