Wall clock time and date at job start Mon Mar 30 2020 01:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48499 * 109.47452 * 240.00203 * 3 2 1 5 5 H 1.48502 * 109.47257 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47370 * 120.00119 * 3 2 1 7 7 C 1.39933 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00419 * 196.78529 * 7 2 1 9 9 C 1.41406 * 120.00058 * 16.78680 * 7 2 1 10 10 C 1.40770 * 120.21158 * 205.18185 * 9 7 2 11 11 C 1.37647 * 119.88712 * 179.97438 * 10 9 7 12 12 C 1.38533 * 120.31864 * 359.74385 * 11 10 9 13 13 C 1.39242 * 120.42989 * 0.51419 * 12 11 10 14 14 N 1.39931 * 119.94895 * 179.76409 * 13 12 11 15 15 C 1.34782 * 119.99879 * 325.54236 * 14 13 12 16 16 O 1.21284 * 120.00173 * 354.89679 * 15 14 13 17 17 C 1.50707 * 120.00089 * 174.89368 * 15 14 13 18 18 H 1.08997 * 110.36386 * 39.10089 * 17 15 14 19 19 C 1.54614 * 110.42011 * 276.68713 * 17 15 14 20 20 C 1.54265 * 104.94344 * 217.41251 * 19 17 15 21 21 H 1.09005 * 110.32146 * 118.87103 * 20 19 17 22 22 N 1.46897 * 110.32293 * 240.97507 * 20 19 17 23 23 C 1.54375 * 105.15047 * 359.92455 * 20 19 17 24 24 N 1.48556 * 110.40988 * 161.45679 * 17 15 14 25 25 C 1.38281 * 120.10275 * 359.48582 * 13 12 11 26 26 H 0.97001 * 119.99325 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.06161 * 359.95664 * 10 9 7 28 28 H 1.08003 * 119.83846 * 180.02562 * 11 10 9 29 29 H 1.07999 * 119.78143 * 180.27980 * 12 11 10 30 30 H 0.97000 * 120.00828 * 145.54559 * 14 13 12 31 31 H 1.08998 * 110.40054 * 98.54346 * 19 17 15 32 32 H 1.09003 * 110.35380 * 336.25578 * 19 17 15 33 33 H 1.00898 * 111.00190 * 178.57401 * 22 20 19 34 34 H 1.00906 * 110.99997 * 302.52936 * 22 20 19 35 35 H 1.09000 * 110.41572 * 142.68918 * 23 20 19 36 36 H 1.09009 * 110.40919 * 265.12466 * 23 20 19 37 37 H 1.00901 * 110.99854 * 277.81878 * 24 17 15 38 38 H 1.08002 * 120.15909 * 180.27516 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2774 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0534 -1.2320 0.2695 9 6 1.3461 -2.4102 -0.3548 10 6 1.8182 -3.6477 0.1221 11 6 1.1685 -4.8101 -0.2265 12 6 0.0483 -4.7680 -1.0405 13 6 -0.4269 -3.5518 -1.5239 14 7 -1.5563 -3.5215 -2.3495 15 6 -1.7817 -4.5252 -3.2203 16 8 -0.9601 -5.4072 -3.3549 17 6 -3.0546 -4.5517 -4.0267 18 1 -3.3204 -3.5449 -4.3490 19 6 -4.2033 -5.1759 -3.2012 20 6 -5.0205 -6.0006 -4.2170 21 1 -5.0201 -7.0540 -3.9370 22 7 -6.3974 -5.4948 -4.2946 23 6 -4.3002 -5.8047 -5.5683 24 7 -2.9053 -5.4493 -5.2010 25 6 0.2122 -2.3733 -1.1848 26 1 -0.4849 0.8401 0.0004 27 1 2.6888 -3.6852 0.7600 28 1 1.5311 -5.7591 0.1401 29 1 -0.4574 -5.6850 -1.3049 30 1 -2.1771 -2.7781 -2.2952 31 1 -4.8233 -4.3946 -2.7617 32 1 -3.8016 -5.8246 -2.4227 33 1 -6.9351 -6.0124 -4.9736 34 1 -6.8421 -5.5159 -3.3891 35 1 -4.3176 -6.7289 -6.1459 36 1 -4.7631 -4.9945 -6.1318 37 1 -2.4406 -4.9758 -5.9612 38 1 -0.1583 -1.4290 -1.5557 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218987414.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:41 Heat of formation + Delta-G solvation = -7.354359 kcal Electronic energy + Delta-G solvation = -20702.721369 eV Core-core repulsion = 17544.388348 eV Total energy + Delta-G solvation = -3158.333021 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.00291 -38.30978 -36.90675 -34.19611 -33.50430 -33.23594 -30.10109 -29.49009 -28.30143 -27.29118 -25.22419 -23.22282 -21.23724 -20.68813 -20.45528 -19.39893 -17.41817 -17.18622 -16.85445 -15.80306 -15.62402 -15.41975 -14.81006 -14.71848 -14.24308 -13.67249 -13.50378 -13.04744 -12.98598 -12.59141 -12.51498 -12.33509 -11.85884 -11.61799 -11.36936 -11.27996 -11.18723 -11.10588 -10.68681 -10.62128 -10.01277 -9.70247 -9.38773 -9.17950 -9.05650 -8.93548 -8.58116 -7.35666 -6.98299 -6.67144 -4.35487 2.61460 2.88197 3.06577 3.10274 3.21781 3.33312 3.55150 3.94326 4.06833 4.35558 4.51543 4.61591 4.67085 4.90606 5.05271 5.22948 5.37476 5.55588 5.62573 5.70552 5.71029 5.85653 6.29180 6.39759 6.66801 6.73190 6.84435 6.94507 7.02866 7.07583 7.10309 7.16451 7.28226 7.65444 7.73613 7.96098 8.05178 8.21182 8.36383 8.59928 8.83100 8.90809 8.99134 10.20557 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025712 B = 0.004031 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.720114 B = 6944.196611 C = 7554.333569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.465 4.465 8 H 0.078 0.922 9 C 0.121 3.879 10 C -0.228 4.228 11 C -0.086 4.086 12 C -0.227 4.227 13 C 0.148 3.852 14 N -0.667 5.667 15 C 0.511 3.489 16 O -0.503 6.503 17 C 0.054 3.946 18 H 0.071 0.929 19 C -0.106 4.106 20 C 0.085 3.915 21 H 0.050 0.950 22 N -0.845 5.845 23 C 0.043 3.957 24 N -0.638 5.638 25 C -0.183 4.183 26 H 0.279 0.721 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.401 0.599 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.341 0.659 34 H 0.345 0.655 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.344 0.656 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.002 -4.824 -7.553 14.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.495 4.495 8 H 0.096 0.904 9 C 0.118 3.882 10 C -0.248 4.248 11 C -0.105 4.105 12 C -0.248 4.248 13 C 0.056 3.944 14 N -0.311 5.311 15 C 0.295 3.705 16 O -0.376 6.376 17 C -0.060 4.060 18 H 0.089 0.911 19 C -0.144 4.144 20 C -0.027 4.027 21 H 0.068 0.932 22 N -0.376 5.376 23 C -0.087 4.087 24 N -0.268 5.268 25 C -0.204 4.204 26 H 0.090 0.910 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.235 0.765 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.160 0.840 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.108 -5.279 -7.536 14.424 hybrid contribution -0.630 1.118 -0.024 1.283 sum -11.738 -4.162 -7.560 14.570 Atomic orbital electron populations 1.69809 1.07515 1.29038 1.36247 1.25862 0.94736 1.01155 0.92200 0.86385 0.80149 0.80299 0.79963 1.18897 1.20423 1.19044 1.19506 0.97771 0.91035 1.41148 0.90427 1.17350 0.90582 0.92126 0.88164 1.21038 1.03861 0.92914 1.07027 1.20420 0.95637 0.96591 0.97848 1.20293 1.02103 0.95566 1.06814 1.17597 0.88347 0.95012 0.93469 1.43520 1.25644 1.23955 1.38006 1.20256 0.87530 0.82373 0.80300 1.90708 1.45468 1.36586 1.64869 1.22404 0.93768 0.96684 0.93142 0.91128 1.22326 0.94794 0.99885 0.97444 1.22043 0.88548 0.96772 0.95331 0.93179 1.58830 1.03161 1.62111 1.13496 1.22950 0.88495 1.01152 0.96100 1.63333 1.14852 1.41236 1.07394 1.21067 0.99957 0.95349 1.04054 0.91028 0.88891 0.89069 0.88172 0.76537 0.89582 0.90360 0.84618 0.84235 0.90055 0.92837 0.84026 0.86023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.17 10.94 55.55 0.61 -19.56 16 2 C 0.08 1.92 5.16 -17.35 -0.09 1.83 16 3 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.46 -12.35 9.05 -37.74 -0.34 -12.69 16 8 H 0.08 1.99 7.90 -52.48 -0.41 1.57 16 9 C 0.12 3.25 5.57 -106.85 -0.59 2.65 16 10 C -0.23 -5.77 9.79 -38.84 -0.38 -6.15 16 11 C -0.09 -2.06 10.02 -39.69 -0.40 -2.46 16 12 C -0.23 -5.52 8.66 -39.10 -0.34 -5.86 16 13 C 0.15 3.51 6.25 -83.77 -0.52 2.99 16 14 N -0.67 -12.81 5.33 -9.91 -0.05 -12.86 16 15 C 0.51 9.41 6.73 -10.98 -0.07 9.34 16 16 O -0.50 -11.36 14.34 5.55 0.08 -11.28 16 17 C 0.05 0.73 3.58 -67.10 -0.24 0.49 16 18 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 19 C -0.11 -1.25 6.31 -25.22 -0.16 -1.41 16 20 C 0.08 0.83 4.18 -66.33 -0.28 0.56 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 N -0.84 -6.51 9.14 -3.49 -0.03 -6.54 16 23 C 0.04 0.43 7.18 -2.19 -0.02 0.42 16 24 N -0.64 -8.31 6.88 -103.82 -0.71 -9.02 16 25 C -0.18 -4.71 8.60 -38.68 -0.33 -5.04 16 26 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 27 H 0.09 2.20 8.06 -52.49 -0.42 1.77 16 28 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 29 H 0.10 2.42 6.48 -52.49 -0.34 2.08 16 30 H 0.40 6.54 8.82 -40.82 -0.36 6.18 16 31 H 0.09 0.91 7.95 -51.93 -0.41 0.49 16 32 H 0.08 1.04 7.86 -51.93 -0.41 0.64 16 33 H 0.34 2.04 9.07 -39.29 -0.36 1.68 16 34 H 0.34 2.28 9.03 -39.29 -0.35 1.92 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.50 8.06 -51.92 -0.42 0.09 16 37 H 0.34 4.07 8.92 -39.29 -0.35 3.72 16 38 H 0.12 3.16 6.17 -52.49 -0.32 2.84 16 LS Contribution 317.71 15.07 4.79 4.79 Total: -1.00 -30.92 317.71 -9.11 -40.03 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -4.99 Total: 16.24 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -3.76 Total: -15.33 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: -0.19 Total: -47.99 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.92 -9.11 -40.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218987414.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.672 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds