Wall clock time and date at job start Mon Mar 30 2020 01:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48499 * 109.47452 * 240.00203 * 3 2 1 5 5 H 1.48502 * 109.47257 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47370 * 120.00119 * 3 2 1 7 7 C 1.39933 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00419 * 196.78529 * 7 2 1 9 9 C 1.41406 * 120.00058 * 16.78680 * 7 2 1 10 10 C 1.40770 * 120.21158 * 205.18185 * 9 7 2 11 11 C 1.37647 * 119.88712 * 179.97438 * 10 9 7 12 12 C 1.38533 * 120.31864 * 359.74385 * 11 10 9 13 13 C 1.39242 * 120.42989 * 0.51419 * 12 11 10 14 14 N 1.39931 * 119.94895 * 179.76409 * 13 12 11 15 15 C 1.34782 * 119.99879 * 325.54236 * 14 13 12 16 16 O 1.21284 * 120.00173 * 354.89679 * 15 14 13 17 17 C 1.50707 * 120.00089 * 174.89368 * 15 14 13 18 18 H 1.08997 * 110.36386 * 39.10089 * 17 15 14 19 19 C 1.54614 * 110.42011 * 276.68713 * 17 15 14 20 20 C 1.54265 * 104.94344 * 217.41251 * 19 17 15 21 21 H 1.09005 * 110.32146 * 118.87103 * 20 19 17 22 22 N 1.46897 * 110.32293 * 240.97507 * 20 19 17 23 23 C 1.54375 * 105.15047 * 359.92455 * 20 19 17 24 24 N 1.48556 * 110.40988 * 161.45679 * 17 15 14 25 25 C 1.38281 * 120.10275 * 359.48582 * 13 12 11 26 26 H 0.97001 * 119.99325 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.06161 * 359.95664 * 10 9 7 28 28 H 1.08003 * 119.83846 * 180.02562 * 11 10 9 29 29 H 1.07999 * 119.78143 * 180.27980 * 12 11 10 30 30 H 0.97000 * 120.00828 * 145.54559 * 14 13 12 31 31 H 1.08998 * 110.40054 * 98.54346 * 19 17 15 32 32 H 1.09003 * 110.35380 * 336.25578 * 19 17 15 33 33 H 1.00898 * 111.00190 * 178.57401 * 22 20 19 34 34 H 1.00906 * 110.99997 * 302.52936 * 22 20 19 35 35 H 1.09000 * 110.41572 * 142.68918 * 23 20 19 36 36 H 1.09009 * 110.40919 * 265.12466 * 23 20 19 37 37 H 1.00901 * 110.99854 * 277.81878 * 24 17 15 38 38 H 1.08002 * 120.15909 * 180.27516 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2774 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0534 -1.2320 0.2695 9 6 1.3461 -2.4102 -0.3548 10 6 1.8182 -3.6477 0.1221 11 6 1.1685 -4.8101 -0.2265 12 6 0.0483 -4.7680 -1.0405 13 6 -0.4269 -3.5518 -1.5239 14 7 -1.5563 -3.5215 -2.3495 15 6 -1.7817 -4.5252 -3.2203 16 8 -0.9601 -5.4072 -3.3549 17 6 -3.0546 -4.5517 -4.0267 18 1 -3.3204 -3.5449 -4.3490 19 6 -4.2033 -5.1759 -3.2012 20 6 -5.0205 -6.0006 -4.2170 21 1 -5.0201 -7.0540 -3.9370 22 7 -6.3974 -5.4948 -4.2946 23 6 -4.3002 -5.8047 -5.5683 24 7 -2.9053 -5.4493 -5.2010 25 6 0.2122 -2.3733 -1.1848 26 1 -0.4849 0.8401 0.0004 27 1 2.6888 -3.6852 0.7600 28 1 1.5311 -5.7591 0.1401 29 1 -0.4574 -5.6850 -1.3049 30 1 -2.1771 -2.7781 -2.2952 31 1 -4.8233 -4.3946 -2.7617 32 1 -3.8016 -5.8246 -2.4227 33 1 -6.9351 -6.0124 -4.9736 34 1 -6.8421 -5.5159 -3.3891 35 1 -4.3176 -6.7289 -6.1459 36 1 -4.7631 -4.9945 -6.1318 37 1 -2.4406 -4.9758 -5.9612 38 1 -0.1583 -1.4290 -1.5557 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218987414.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:40 Heat of formation + Delta-G solvation = -31.351954 kcal Electronic energy + Delta-G solvation = -20703.761983 eV Core-core repulsion = 17544.388348 eV Total energy + Delta-G solvation = -3159.373635 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.42791 -39.62905 -38.52987 -35.95995 -35.07929 -34.30740 -31.55004 -31.20718 -29.78500 -28.26258 -27.16812 -24.49613 -23.11089 -22.22795 -21.39721 -20.92401 -19.24162 -18.53407 -17.94758 -17.33886 -16.84699 -16.51649 -16.44689 -16.18240 -15.82600 -14.95720 -14.88850 -14.67629 -14.34574 -14.19161 -13.68639 -13.49981 -13.43295 -13.09840 -12.86981 -12.79401 -12.58809 -12.34202 -12.21334 -12.11708 -11.83350 -11.57548 -11.15140 -10.93209 -10.59761 -9.68965 -9.62220 -9.33216 -8.85241 -8.54176 -6.35380 0.82426 1.04659 1.40825 1.50173 1.53768 1.75909 2.13220 2.23024 2.76015 3.18787 3.49450 3.52704 3.71296 3.72844 3.88895 4.07262 4.26257 4.46051 4.52273 4.71624 4.72840 4.80916 4.85315 4.91017 4.93190 5.11581 5.15963 5.22087 5.35437 5.51582 5.79938 5.86323 6.03136 6.08706 6.19385 6.20901 6.35036 6.58349 6.60181 6.75788 6.94112 6.98597 7.32356 8.34868 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025712 B = 0.004031 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.720114 B = 6944.196611 C = 7554.333569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.039 3.961 3 Si 0.981 3.019 4 H -0.264 1.264 5 H -0.265 1.265 6 H -0.261 1.261 7 C -0.500 4.500 8 H 0.076 0.924 9 C 0.093 3.907 10 C -0.249 4.249 11 C -0.085 4.085 12 C -0.241 4.241 13 C 0.153 3.847 14 N -0.661 5.661 15 C 0.510 3.490 16 O -0.547 6.547 17 C 0.063 3.937 18 H 0.095 0.905 19 C -0.104 4.104 20 C 0.091 3.909 21 H 0.048 0.952 22 N -0.843 5.843 23 C 0.048 3.952 24 N -0.660 5.660 25 C -0.203 4.203 26 H 0.289 0.711 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.100 0.900 30 H 0.415 0.585 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.354 0.646 34 H 0.352 0.648 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.348 0.652 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.428 -4.026 -8.349 16.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.176 4.176 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.189 1.189 6 H -0.185 1.185 7 C -0.530 4.530 8 H 0.094 0.906 9 C 0.090 3.910 10 C -0.269 4.269 11 C -0.103 4.103 12 C -0.262 4.262 13 C 0.059 3.941 14 N -0.307 5.307 15 C 0.298 3.702 16 O -0.423 6.423 17 C -0.050 4.050 18 H 0.113 0.887 19 C -0.143 4.143 20 C -0.021 4.021 21 H 0.066 0.934 22 N -0.376 5.376 23 C -0.082 4.082 24 N -0.291 5.291 25 C -0.225 4.225 26 H 0.100 0.900 27 H 0.119 0.881 28 H 0.136 0.864 29 H 0.118 0.882 30 H 0.251 0.749 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.168 0.832 34 H 0.166 0.834 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.165 0.835 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.590 -4.488 -8.345 15.758 hybrid contribution -0.240 0.803 0.212 0.864 sum -12.831 -3.685 -8.134 15.632 Atomic orbital electron populations 1.69841 1.08764 1.30594 1.35465 1.26686 0.95582 1.04196 0.91121 0.85268 0.78845 0.75786 0.79893 1.18813 1.18906 1.18544 1.19777 0.98047 0.92234 1.42901 0.90597 1.17758 0.91391 0.93065 0.88746 1.21213 1.04708 0.93054 1.07956 1.20727 0.95122 0.97418 0.97051 1.20448 1.02658 0.95742 1.07395 1.17671 0.89095 0.94240 0.93049 1.43514 1.24632 1.24977 1.37562 1.21192 0.88536 0.80879 0.79613 1.90679 1.47393 1.38061 1.66184 1.22352 0.91173 0.98416 0.93085 0.88746 1.22331 0.94489 1.00198 0.97273 1.21915 0.89457 0.96271 0.94454 0.93417 1.58779 1.02314 1.62061 1.14415 1.23001 0.86766 1.02043 0.96350 1.63287 1.16984 1.41347 1.07484 1.21021 1.00674 0.95643 1.05161 0.90012 0.88054 0.86368 0.88231 0.74872 0.88069 0.92390 0.83237 0.83393 0.88956 0.91625 0.83523 0.86776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.39 10.94 21.82 0.24 -41.16 16 2 C 0.04 1.96 5.16 85.25 0.44 2.40 16 3 Si 0.98 37.62 29.59 68.60 2.03 39.65 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 6 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 7 C -0.50 -27.12 9.05 23.46 0.21 -26.91 16 8 H 0.08 3.98 7.90 -2.91 -0.02 3.96 16 9 C 0.09 5.16 5.57 -21.31 -0.12 5.04 16 10 C -0.25 -12.88 9.79 22.75 0.22 -12.66 16 11 C -0.08 -4.08 10.02 22.20 0.22 -3.86 16 12 C -0.24 -11.92 8.66 22.58 0.20 -11.72 16 13 C 0.15 7.39 6.25 38.10 0.24 7.63 16 14 N -0.66 -25.40 5.33 -303.65 -1.62 -27.02 16 15 C 0.51 18.69 6.73 87.66 0.59 19.28 16 16 O -0.55 -24.97 14.34 -3.04 -0.04 -25.02 16 17 C 0.06 1.62 3.58 44.40 0.16 1.78 16 18 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 19 C -0.10 -2.28 6.31 31.57 0.20 -2.08 16 20 C 0.09 1.58 4.18 45.81 0.19 1.77 16 21 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 22 N -0.84 -10.56 9.14 -164.97 -1.51 -12.06 16 23 C 0.05 0.84 7.18 86.45 0.62 1.46 16 24 N -0.66 -16.19 6.88 -482.38 -3.32 -19.51 16 25 C -0.20 -10.73 8.60 22.85 0.20 -10.53 16 26 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 27 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 28 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 29 H 0.10 4.89 6.48 -2.91 -0.02 4.87 16 30 H 0.41 13.33 8.82 -92.71 -0.82 12.51 16 31 H 0.10 1.89 7.95 -2.39 -0.02 1.87 16 32 H 0.06 1.51 7.86 -2.39 -0.02 1.49 16 33 H 0.35 3.15 9.07 -89.70 -0.81 2.34 16 34 H 0.35 3.69 9.03 -89.69 -0.81 2.88 16 35 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.02 8.06 -2.38 -0.02 1.00 16 37 H 0.35 7.78 8.92 -89.69 -0.80 6.98 16 38 H 0.11 6.08 6.17 -2.91 -0.02 6.06 16 Total: -1.00 -67.38 317.71 -2.96 -70.35 By element: Atomic # 1 Polarization: 45.28 SS G_CDS: -2.11 Total: 43.17 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 3.37 Total: -28.40 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -6.21 Total: -99.76 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.04 Total: -25.02 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Total: -67.38 -2.96 -70.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218987414.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.998 kcal (2) G-P(sol) polarization free energy of solvation -67.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds