Wall clock time and date at job start Mon Mar 30 2020 01:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86802 * 119.99915 * 2 1 4 4 H 1.48503 * 109.47178 * 275.30888 * 3 2 1 5 5 H 1.48506 * 109.47146 * 35.30727 * 3 2 1 6 6 H 1.48498 * 109.47376 * 155.30520 * 3 2 1 7 7 C 1.39933 * 120.00491 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99435 * 346.47646 * 7 2 1 9 9 C 1.41408 * 120.00125 * 166.47888 * 7 2 1 10 10 C 1.40772 * 120.21148 * 331.40440 * 9 7 2 11 11 C 1.37634 * 119.88960 * 179.97438 * 10 9 7 12 12 C 1.38537 * 120.31805 * 0.02562 * 11 10 9 13 13 C 1.39243 * 120.42993 * 359.97438 * 12 11 10 14 14 N 1.39940 * 119.94738 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00156 * 146.78806 * 14 13 12 16 16 O 1.21288 * 119.99631 * 354.82893 * 15 14 13 17 17 C 1.50694 * 120.00029 * 175.10815 * 15 14 13 18 18 H 1.09005 * 110.64533 * 298.29359 * 17 15 14 19 19 C 1.54930 * 110.72658 * 61.45298 * 17 15 14 20 20 N 1.48531 * 103.23031 * 155.76785 * 19 17 15 21 21 C 1.47897 * 105.82227 * 320.79397 * 20 19 17 22 22 C 1.53995 * 107.05668 * 25.32805 * 21 20 19 23 23 H 1.09003 * 110.31004 * 239.85862 * 22 21 20 24 24 N 1.46903 * 110.31257 * 117.69194 * 22 21 20 25 25 C 1.38278 * 120.10319 * 0.29868 * 13 12 11 26 26 H 0.96998 * 120.00275 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.05793 * 359.97438 * 10 9 7 28 28 H 1.07995 * 119.84658 * 180.02562 * 11 10 9 29 29 H 1.08008 * 119.78236 * 179.97438 * 12 11 10 30 30 H 0.97002 * 119.99982 * 326.78319 * 14 13 12 31 31 H 1.08995 * 110.66849 * 274.20562 * 19 17 15 32 32 H 1.09004 * 110.66786 * 37.16534 * 19 17 15 33 33 H 1.00895 * 111.00329 * 200.27680 * 20 19 17 34 34 H 1.09007 * 109.91923 * 144.67628 * 21 20 19 35 35 H 1.08994 * 109.92027 * 265.97366 * 21 20 19 36 36 H 1.00897 * 110.99741 * 64.27789 * 24 22 21 37 37 H 1.00894 * 111.00108 * 188.23734 * 24 22 21 38 38 H 1.08005 * 120.16168 * 179.72380 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3775 2.1112 -1.3941 5 1 1.5002 2.6178 0.8092 6 1 3.5913 1.4105 0.5849 7 6 2.0080 -1.2118 0.0005 8 1 1.4904 -2.1341 0.2197 9 6 3.3927 -1.2288 -0.2858 10 6 3.9555 -0.2450 -1.1206 11 6 5.3042 -0.2675 -1.3945 12 6 6.1114 -1.2546 -0.8528 13 6 5.5686 -2.2342 -0.0253 14 7 6.3934 -3.2262 0.5169 15 6 6.1294 -3.7281 1.7395 16 8 5.2349 -3.2558 2.4087 17 6 6.9497 -4.8719 2.2777 18 1 6.8441 -5.7523 1.6437 19 6 8.4391 -4.4652 2.4074 20 7 8.9538 -5.3881 3.4511 21 6 7.8761 -5.4997 4.4578 22 6 6.5507 -5.1925 3.7365 23 1 6.0622 -4.3316 4.1930 24 7 5.6647 -6.3636 3.7771 25 6 4.2150 -2.2316 0.2569 26 1 -0.4850 0.8400 -0.0004 27 1 3.3302 0.5263 -1.5456 28 1 5.7353 0.4878 -2.0347 29 1 7.1686 -1.2643 -1.0737 30 1 7.1551 -3.5526 0.0127 31 1 8.9636 -4.6198 1.4645 32 1 8.5279 -3.4277 2.7298 33 1 9.8004 -5.0286 3.8661 34 1 7.8516 -6.5105 4.8651 35 1 8.0392 -4.7779 5.2581 36 1 5.3977 -6.5822 4.7252 37 1 4.8521 -6.2226 3.1959 38 1 3.7922 -2.9936 0.8950 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218987568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:44 Heat of formation + Delta-G solvation = -7.077570 kcal Electronic energy + Delta-G solvation = -20981.812030 eV Core-core repulsion = 17823.491012 eV Total energy + Delta-G solvation = -3158.321018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.38103 -38.43496 -37.15211 -34.61441 -33.41233 -33.16077 -30.62169 -30.28957 -28.23867 -27.23753 -25.25058 -23.18169 -21.81321 -20.92365 -20.54259 -19.49615 -17.94425 -17.48363 -16.34344 -16.05711 -15.59383 -15.45293 -15.06651 -14.78305 -14.56393 -14.05907 -13.70972 -13.35618 -13.08846 -12.76366 -12.60499 -12.44421 -12.10009 -11.74277 -11.66887 -11.55471 -11.20506 -11.06965 -10.74179 -10.70653 -10.04222 -9.81075 -9.61527 -9.16702 -9.10087 -8.93085 -8.67779 -7.69941 -7.16644 -6.92891 -4.49635 2.31259 2.60522 3.03010 3.12207 3.23689 3.34163 3.38107 3.99857 4.02299 4.31030 4.38825 4.48182 4.52165 4.94175 5.08853 5.16638 5.39212 5.42989 5.50674 5.55559 5.74053 5.79788 5.94761 6.15536 6.35329 6.42066 6.58187 6.72074 6.78161 6.96802 7.05985 7.15445 7.26254 7.32010 7.48106 7.57784 7.86750 7.96081 8.02678 8.34576 8.53565 8.64235 8.80398 10.09548 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026701 B = 0.004591 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.386056 B = 6097.655585 C = 6718.895939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.082 3.918 3 Si 0.916 3.084 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.241 1.241 7 C -0.438 4.438 8 H 0.090 0.910 9 C 0.102 3.898 10 C -0.248 4.248 11 C -0.063 4.063 12 C -0.266 4.266 13 C 0.163 3.837 14 N -0.666 5.666 15 C 0.510 3.490 16 O -0.514 6.514 17 C -0.109 4.109 18 H 0.119 0.881 19 C 0.048 3.952 20 N -0.664 5.664 21 C 0.045 3.955 22 C 0.092 3.908 23 H 0.065 0.935 24 N -0.838 5.838 25 C -0.198 4.198 26 H 0.285 0.715 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.401 0.599 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.339 0.661 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.341 0.659 37 H 0.348 0.652 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.527 -6.990 4.773 16.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.137 4.137 3 Si 0.744 3.256 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.164 1.164 7 C -0.466 4.466 8 H 0.108 0.892 9 C 0.099 3.901 10 C -0.268 4.268 11 C -0.082 4.082 12 C -0.287 4.287 13 C 0.071 3.929 14 N -0.310 5.310 15 C 0.296 3.704 16 O -0.388 6.388 17 C -0.131 4.131 18 H 0.137 0.863 19 C -0.082 4.082 20 N -0.293 5.293 21 C -0.085 4.085 22 C -0.020 4.020 23 H 0.083 0.917 24 N -0.368 5.368 25 C -0.220 4.220 26 H 0.096 0.904 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.235 0.765 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.155 0.845 34 H 0.107 0.893 35 H 0.060 0.940 36 H 0.154 0.846 37 H 0.161 0.839 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.083 -7.634 4.646 16.679 hybrid contribution -0.081 2.169 0.509 2.229 sum 14.002 -5.465 5.156 15.891 Atomic orbital electron populations 1.69657 1.08031 1.30235 1.35612 1.26171 0.94824 1.01773 0.90883 0.86262 0.81331 0.79472 0.78574 1.19815 1.22184 1.16439 1.19505 0.91552 0.95705 1.39877 0.89199 1.17605 0.93184 0.90541 0.88812 1.20961 0.95072 1.04173 1.06558 1.20347 0.93598 0.96457 0.97829 1.20038 0.97953 1.00145 1.10556 1.17510 0.89820 0.89238 0.96374 1.43483 1.30587 1.39270 1.17620 1.20460 0.84797 0.83887 0.81304 1.90769 1.31470 1.59318 1.57271 1.22316 0.94722 0.97792 0.98319 0.86266 1.22963 0.92890 0.94949 0.97358 1.63043 1.05629 1.48259 1.12341 1.22759 0.90134 1.02052 0.93547 1.22052 0.93650 0.92838 0.93505 0.91705 1.58864 1.23203 1.38759 1.15977 1.20919 0.90567 1.04242 1.06240 0.90433 0.88372 0.88446 0.88632 0.76473 0.89107 0.93325 0.84541 0.89257 0.93970 0.84628 0.83913 0.86928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.14 13.93 55.55 0.77 -21.36 16 2 C 0.08 2.21 5.46 -17.35 -0.09 2.12 16 3 Si 0.92 21.48 24.37 -169.99 -4.14 17.33 16 4 H -0.27 -6.09 6.76 56.52 0.38 -5.71 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.24 -5.85 6.50 56.52 0.37 -5.48 16 7 C -0.44 -12.29 9.61 -37.74 -0.36 -12.65 16 8 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 9 C 0.10 2.69 5.18 -106.85 -0.55 2.13 16 10 C -0.25 -6.06 6.93 -38.84 -0.27 -6.33 16 11 C -0.06 -1.36 10.02 -39.69 -0.40 -1.76 16 12 C -0.27 -5.37 9.97 -39.10 -0.39 -5.76 16 13 C 0.16 3.43 6.27 -83.77 -0.53 2.91 16 14 N -0.67 -10.87 5.30 -9.91 -0.05 -10.92 16 15 C 0.51 8.43 6.89 -10.99 -0.08 8.35 16 16 O -0.51 -10.79 13.17 5.55 0.07 -10.72 16 17 C -0.11 -1.35 3.12 -89.92 -0.28 -1.63 16 18 H 0.12 1.44 8.06 -51.93 -0.42 1.02 16 19 C 0.05 0.49 6.87 -1.90 -0.01 0.47 16 20 N -0.66 -6.37 7.51 -110.09 -0.83 -7.20 16 21 C 0.04 0.45 7.32 -2.76 -0.02 0.43 16 22 C 0.09 1.12 3.49 -66.35 -0.23 0.88 16 23 H 0.07 0.94 6.92 -51.93 -0.36 0.58 16 24 N -0.84 -9.33 9.13 -3.51 -0.03 -9.36 16 25 C -0.20 -4.89 8.39 -38.69 -0.32 -5.21 16 26 H 0.29 7.04 8.30 -40.82 -0.34 6.70 16 27 H 0.10 2.38 4.22 -52.48 -0.22 2.16 16 28 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 30 H 0.40 4.95 8.75 -40.82 -0.36 4.60 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.52 8.04 -51.93 -0.42 0.10 16 33 H 0.34 2.57 8.92 -39.29 -0.35 2.22 16 34 H 0.09 0.88 7.93 -51.92 -0.41 0.47 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.34 3.16 9.08 -39.29 -0.36 2.81 16 37 H 0.35 4.15 9.02 -39.30 -0.35 3.79 16 38 H 0.11 2.88 6.41 -52.48 -0.34 2.54 16 LS Contribution 309.39 15.07 4.66 4.66 Total: -1.00 -30.99 309.39 -7.97 -38.96 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -4.89 Total: 14.63 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -3.54 Total: -16.04 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.14 Total: -48.84 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.07 Total: -10.72 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.14 Total: 17.33 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.99 -7.97 -38.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218987568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.885 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds