Wall clock time and date at job start Mon Mar 30 2020 01:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86802 * 119.99915 * 2 1 4 4 H 1.48503 * 109.47178 * 275.30888 * 3 2 1 5 5 H 1.48506 * 109.47146 * 35.30727 * 3 2 1 6 6 H 1.48498 * 109.47376 * 155.30520 * 3 2 1 7 7 C 1.39933 * 120.00491 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99435 * 346.47646 * 7 2 1 9 9 C 1.41408 * 120.00125 * 166.47888 * 7 2 1 10 10 C 1.40772 * 120.21148 * 331.40440 * 9 7 2 11 11 C 1.37634 * 119.88960 * 179.97438 * 10 9 7 12 12 C 1.38537 * 120.31805 * 0.02562 * 11 10 9 13 13 C 1.39243 * 120.42993 * 359.97438 * 12 11 10 14 14 N 1.39940 * 119.94738 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00156 * 146.78806 * 14 13 12 16 16 O 1.21288 * 119.99631 * 354.82893 * 15 14 13 17 17 C 1.50694 * 120.00029 * 175.10815 * 15 14 13 18 18 H 1.09005 * 110.64533 * 298.29359 * 17 15 14 19 19 C 1.54930 * 110.72658 * 61.45298 * 17 15 14 20 20 N 1.48531 * 103.23031 * 155.76785 * 19 17 15 21 21 C 1.47897 * 105.82227 * 320.79397 * 20 19 17 22 22 C 1.53995 * 107.05668 * 25.32805 * 21 20 19 23 23 H 1.09003 * 110.31004 * 239.85862 * 22 21 20 24 24 N 1.46903 * 110.31257 * 117.69194 * 22 21 20 25 25 C 1.38278 * 120.10319 * 0.29868 * 13 12 11 26 26 H 0.96998 * 120.00275 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.05793 * 359.97438 * 10 9 7 28 28 H 1.07995 * 119.84658 * 180.02562 * 11 10 9 29 29 H 1.08008 * 119.78236 * 179.97438 * 12 11 10 30 30 H 0.97002 * 119.99982 * 326.78319 * 14 13 12 31 31 H 1.08995 * 110.66849 * 274.20562 * 19 17 15 32 32 H 1.09004 * 110.66786 * 37.16534 * 19 17 15 33 33 H 1.00895 * 111.00329 * 200.27680 * 20 19 17 34 34 H 1.09007 * 109.91923 * 144.67628 * 21 20 19 35 35 H 1.08994 * 109.92027 * 265.97366 * 21 20 19 36 36 H 1.00897 * 110.99741 * 64.27789 * 24 22 21 37 37 H 1.00894 * 111.00108 * 188.23734 * 24 22 21 38 38 H 1.08005 * 120.16168 * 179.72380 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3775 2.1112 -1.3941 5 1 1.5002 2.6178 0.8092 6 1 3.5913 1.4105 0.5849 7 6 2.0080 -1.2118 0.0005 8 1 1.4904 -2.1341 0.2197 9 6 3.3927 -1.2288 -0.2858 10 6 3.9555 -0.2450 -1.1206 11 6 5.3042 -0.2675 -1.3945 12 6 6.1114 -1.2546 -0.8528 13 6 5.5686 -2.2342 -0.0253 14 7 6.3934 -3.2262 0.5169 15 6 6.1294 -3.7281 1.7395 16 8 5.2349 -3.2558 2.4087 17 6 6.9497 -4.8719 2.2777 18 1 6.8441 -5.7523 1.6437 19 6 8.4391 -4.4652 2.4074 20 7 8.9538 -5.3881 3.4511 21 6 7.8761 -5.4997 4.4578 22 6 6.5507 -5.1925 3.7365 23 1 6.0622 -4.3316 4.1930 24 7 5.6647 -6.3636 3.7771 25 6 4.2150 -2.2316 0.2569 26 1 -0.4850 0.8400 -0.0004 27 1 3.3302 0.5263 -1.5456 28 1 5.7353 0.4878 -2.0347 29 1 7.1686 -1.2643 -1.0737 30 1 7.1551 -3.5526 0.0127 31 1 8.9636 -4.6198 1.4645 32 1 8.5279 -3.4277 2.7298 33 1 9.8004 -5.0286 3.8661 34 1 7.8516 -6.5105 4.8651 35 1 8.0392 -4.7779 5.2581 36 1 5.3977 -6.5822 4.7252 37 1 4.8521 -6.2226 3.1959 38 1 3.7922 -2.9936 0.8950 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218987568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:44 Heat of formation + Delta-G solvation = -33.771126 kcal Electronic energy + Delta-G solvation = -20982.969550 eV Core-core repulsion = 17823.491012 eV Total energy + Delta-G solvation = -3159.478538 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.71065 -39.79089 -38.60227 -36.27322 -35.09424 -34.21766 -32.24707 -31.74905 -29.75601 -28.09295 -27.17959 -24.50202 -23.01305 -22.74132 -21.79891 -20.73105 -19.64302 -18.80636 -17.83429 -17.40422 -16.93175 -16.69789 -16.46876 -16.21724 -16.07881 -15.36938 -14.89841 -14.76456 -14.61562 -14.36686 -13.99670 -13.81195 -13.44265 -13.38676 -12.96140 -12.71117 -12.58759 -12.56762 -12.45481 -12.08716 -11.81919 -11.64836 -11.37354 -10.88548 -10.76379 -9.81767 -9.57701 -9.51351 -8.92147 -8.88065 -6.56971 0.61556 0.77645 1.21738 1.39366 1.45848 1.60726 2.05635 2.10653 2.58932 3.17472 3.33001 3.46637 3.49344 3.61927 3.94681 4.14638 4.25128 4.30640 4.49742 4.52931 4.57134 4.61925 4.78298 4.83352 4.88266 4.92923 4.97387 4.99853 5.31804 5.56854 5.61799 5.68511 5.76147 5.89330 6.06480 6.19807 6.33915 6.36296 6.43044 6.51677 6.70741 6.77180 7.19763 8.17268 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026701 B = 0.004591 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.386056 B = 6097.655585 C = 6718.895939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.042 3.958 3 Si 0.975 3.025 4 H -0.249 1.249 5 H -0.282 1.282 6 H -0.253 1.253 7 C -0.484 4.484 8 H 0.045 0.955 9 C 0.081 3.919 10 C -0.261 4.261 11 C -0.064 4.064 12 C -0.238 4.238 13 C 0.168 3.832 14 N -0.653 5.653 15 C 0.510 3.490 16 O -0.563 6.563 17 C -0.099 4.099 18 H 0.129 0.871 19 C 0.054 3.946 20 N -0.663 5.663 21 C 0.051 3.949 22 C 0.087 3.913 23 H 0.035 0.965 24 N -0.834 5.834 25 C -0.225 4.225 26 H 0.294 0.706 27 H 0.099 0.901 28 H 0.142 0.858 29 H 0.147 0.853 30 H 0.425 0.575 31 H 0.117 0.883 32 H 0.045 0.955 33 H 0.354 0.646 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.351 0.649 37 H 0.341 0.659 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.145 -6.436 3.827 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.171 4.171 3 Si 0.799 3.201 4 H -0.174 1.174 5 H -0.209 1.209 6 H -0.177 1.177 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.078 3.922 10 C -0.280 4.280 11 C -0.082 4.082 12 C -0.259 4.259 13 C 0.075 3.925 14 N -0.298 5.298 15 C 0.298 3.702 16 O -0.441 6.441 17 C -0.121 4.121 18 H 0.147 0.853 19 C -0.076 4.076 20 N -0.294 5.294 21 C -0.079 4.079 22 C -0.025 4.025 23 H 0.053 0.947 24 N -0.365 5.365 25 C -0.246 4.246 26 H 0.104 0.896 27 H 0.117 0.883 28 H 0.160 0.840 29 H 0.164 0.836 30 H 0.264 0.736 31 H 0.135 0.865 32 H 0.064 0.936 33 H 0.171 0.829 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.164 0.836 37 H 0.153 0.847 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 18.755 -7.119 3.689 20.397 hybrid contribution -1.298 1.820 0.815 2.380 sum 17.457 -5.299 4.504 18.791 Atomic orbital electron populations 1.69693 1.09177 1.31470 1.37933 1.26905 0.95540 1.04415 0.90264 0.85376 0.79288 0.75759 0.79714 1.17370 1.20921 1.17681 1.19468 0.93148 0.94928 1.43884 0.93702 1.17733 0.92568 0.92102 0.89757 1.21110 0.96846 1.03671 1.06410 1.20875 0.92281 0.97492 0.97575 1.20647 1.00253 0.97686 1.07330 1.17619 0.88934 0.90272 0.95722 1.43377 1.30555 1.38205 1.17706 1.21248 0.84146 0.84052 0.80785 1.90770 1.33674 1.60977 1.58639 1.22293 0.95752 0.95912 0.98166 0.85339 1.23006 0.90931 0.94821 0.98806 1.63049 1.05918 1.48218 1.12172 1.22694 0.88956 1.02585 0.93669 1.22073 0.94763 0.92098 0.93607 0.94667 1.58928 1.22857 1.38054 1.16634 1.20877 0.92628 1.04066 1.07056 0.89554 0.88346 0.84050 0.83552 0.73596 0.86454 0.93630 0.82868 0.88795 0.93044 0.83560 0.84739 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.46 13.93 21.82 0.30 -49.15 16 2 C 0.04 2.39 5.46 85.25 0.47 2.86 16 3 Si 0.98 44.83 24.37 68.60 1.67 46.51 16 4 H -0.25 -10.40 6.76 99.48 0.67 -9.73 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.25 -11.95 6.50 99.48 0.65 -11.31 16 7 C -0.48 -29.34 9.61 23.46 0.23 -29.12 16 8 H 0.04 2.97 8.06 -2.91 -0.02 2.94 16 9 C 0.08 4.43 5.18 -21.31 -0.11 4.32 16 10 C -0.26 -12.43 6.93 22.75 0.16 -12.27 16 11 C -0.06 -2.46 10.02 22.20 0.22 -2.24 16 12 C -0.24 -8.45 9.97 22.58 0.23 -8.22 16 13 C 0.17 6.75 6.27 38.10 0.24 6.99 16 14 N -0.65 -19.61 5.30 -303.66 -1.61 -21.22 16 15 C 0.51 16.42 6.89 87.65 0.60 17.03 16 16 O -0.56 -24.45 13.17 -3.05 -0.04 -24.49 16 17 C -0.10 -2.26 3.12 -10.34 -0.03 -2.29 16 18 H 0.13 2.77 8.06 -2.38 -0.02 2.75 16 19 C 0.05 0.90 6.87 86.65 0.60 1.49 16 20 N -0.66 -10.45 7.51 -502.23 -3.77 -14.22 16 21 C 0.05 0.91 7.32 86.45 0.63 1.54 16 22 C 0.09 2.05 3.49 45.80 0.16 2.21 16 23 H 0.04 1.05 6.92 -2.39 -0.02 1.03 16 24 N -0.83 -18.32 9.13 -165.02 -1.51 -19.83 16 25 C -0.22 -11.41 8.39 22.85 0.19 -11.22 16 26 H 0.29 15.17 8.30 -92.71 -0.77 14.40 16 27 H 0.10 4.63 4.22 -2.91 -0.01 4.62 16 28 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 29 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 30 H 0.43 8.60 8.75 -92.71 -0.81 7.78 16 31 H 0.12 1.36 8.14 -2.39 -0.02 1.35 16 32 H 0.05 0.81 8.04 -2.39 -0.02 0.79 16 33 H 0.35 4.04 8.92 -89.70 -0.80 3.24 16 34 H 0.09 1.63 7.93 -2.38 -0.02 1.61 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.35 6.42 9.08 -89.70 -0.81 5.61 16 37 H 0.34 8.36 9.02 -89.70 -0.81 7.55 16 38 H 0.09 4.75 6.41 -2.91 -0.02 4.74 16 Total: -1.00 -73.06 309.39 -3.57 -76.63 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: -2.19 Total: 34.70 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 3.58 Total: -28.92 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -6.58 Total: -104.42 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.04 Total: -24.49 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.67 Total: 46.51 kcal Total: -73.06 -3.57 -76.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218987568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.854 kcal (2) G-P(sol) polarization free energy of solvation -73.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds