Wall clock time and date at job start Mon Mar 30 2020 01:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 O 1.42904 * 114.34213 * 139.68581 * 12 11 10 14 14 C 1.42901 * 113.99749 * 116.07334 * 13 12 11 15 15 C 1.52999 * 109.46930 * 179.97438 * 14 13 12 16 16 C 1.53004 * 109.47311 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.47311 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47120 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.46629 * 179.97438 * 18 17 16 20 20 Cl 1.80299 * 109.46581 * 179.97438 * 19 18 17 21 21 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 26 26 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 27 27 H 1.09002 * 114.16514 * 272.37172 * 12 11 10 28 28 H 1.08997 * 109.47278 * 299.99818 * 14 13 12 29 29 H 1.08998 * 109.47119 * 59.99986 * 14 13 12 30 30 H 1.09005 * 109.47313 * 300.00090 * 15 14 13 31 31 H 1.08999 * 109.47593 * 59.99749 * 15 14 13 32 32 H 1.08997 * 109.47298 * 300.00132 * 16 15 14 33 33 H 1.08998 * 109.46717 * 60.00066 * 16 15 14 34 34 H 1.09011 * 109.46882 * 300.00213 * 17 16 15 35 35 H 1.08998 * 109.47143 * 59.99383 * 17 16 15 36 36 H 1.08997 * 109.46631 * 299.99779 * 18 17 16 37 37 H 1.08998 * 109.47066 * 59.99969 * 18 17 16 38 38 H 1.08997 * 109.47471 * 299.99311 * 19 18 17 39 39 H 1.08998 * 109.47384 * 60.00210 * 19 18 17 40 40 H 1.09000 * 113.47556 * 253.46531 * 21 10 9 41 41 H 1.08997 * 113.47949 * 23.93922 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 8 1.7500 -6.4412 -1.7009 14 6 2.5929 -7.4773 -2.2091 15 6 1.7756 -8.4018 -3.1137 16 6 2.6780 -9.5108 -3.6584 17 6 1.8606 -10.4356 -4.5625 18 6 2.7630 -11.5449 -5.1067 19 6 1.9453 -12.4701 -6.0103 20 17 3.0088 -13.7769 -6.6521 21 6 1.5184 -4.8986 0.2386 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 1.6756 -3.8466 -2.0765 26 1 3.4598 -3.7930 -1.7440 27 1 3.3715 -5.8925 -0.4639 28 1 3.4075 -7.0347 -2.7823 29 1 3.0032 -8.0519 -1.3787 30 1 0.9611 -8.8444 -2.5402 31 1 1.3648 -7.8275 -3.9441 32 1 3.4922 -9.0679 -4.2321 33 1 3.0891 -10.0852 -2.8282 34 1 1.0467 -10.8785 -3.9884 35 1 1.4491 -9.8614 -5.3926 36 1 3.5770 -11.1023 -5.6806 37 1 3.1740 -12.1190 -4.2763 38 1 1.1315 -12.9127 -5.4360 39 1 1.5339 -11.8963 -6.8407 40 1 1.6915 -5.3047 1.2352 41 1 0.4631 -4.8832 -0.0336 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224593304.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:30 Heat of formation + Delta-G solvation = -50.773030 kcal Electronic energy + Delta-G solvation = -18220.522826 eV Core-core repulsion = 15161.414524 eV Total energy + Delta-G solvation = -3059.108302 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.139 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.53684 -37.44702 -36.67551 -35.75223 -32.99713 -32.57560 -29.29371 -28.08114 -25.38834 -25.03794 -23.95200 -21.68326 -21.60215 -21.27906 -19.33850 -16.89553 -16.59852 -16.19071 -15.70333 -15.38610 -14.89999 -14.49528 -14.44348 -14.15417 -13.88947 -13.55585 -13.04059 -12.68258 -12.37395 -12.14522 -12.04224 -11.99552 -11.61161 -11.44726 -11.31201 -11.08949 -10.99857 -10.90677 -10.78732 -10.72105 -10.66948 -10.49547 -10.18016 -9.73490 -9.22048 -9.10694 -8.42727 -7.91661 -6.02886 -4.04218 1.82746 3.32670 3.38061 3.42474 3.67574 4.22969 4.29230 4.43697 4.58977 4.64276 4.83278 4.87749 4.89044 4.98244 5.03579 5.19402 5.24432 5.31956 5.32558 5.36855 5.42734 5.49931 5.60289 5.67031 5.78982 5.92414 6.01956 6.06855 6.09821 6.19804 6.33091 6.42131 6.60757 7.20379 7.47313 7.65519 7.86229 8.10669 8.45596 9.03011 9.59637 11.08245 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.053838 B = 0.001906 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.956928 B =14685.688952 C =14812.062766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.053 3.947 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.161 3.839 10 N -0.465 5.465 11 C -0.005 4.005 12 C 0.052 3.948 13 O -0.377 6.377 14 C 0.061 3.939 15 C -0.119 4.119 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.131 4.131 19 C -0.032 4.032 20 Cl -0.192 7.192 21 C -0.003 4.003 22 H 0.261 0.739 23 H 0.030 0.970 24 H 0.005 0.995 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.170 -24.829 -10.455 27.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.148 4.148 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.213 1.213 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.035 3.965 10 N -0.189 5.189 11 C -0.134 4.134 12 C -0.006 4.006 13 O -0.295 6.295 14 C -0.016 4.016 15 C -0.157 4.157 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.169 4.169 19 C -0.094 4.094 20 Cl -0.166 7.166 21 C -0.133 4.133 22 H 0.071 0.929 23 H 0.048 0.952 24 H 0.023 0.977 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.418 -24.531 -10.109 26.898 hybrid contribution -0.111 0.789 -0.454 0.917 sum 4.307 -23.743 -10.563 26.341 Atomic orbital electron populations 1.69963 1.06073 1.26810 1.51086 1.25018 0.94910 0.99413 0.95435 0.86456 0.79680 0.82897 0.78127 1.20600 1.19847 1.21281 1.21105 0.93601 0.89758 1.49936 0.91849 1.20265 0.90579 0.88854 0.96808 1.68948 1.33761 1.01611 1.14573 1.24236 1.02211 0.92783 0.94181 1.23996 0.96296 0.88497 0.91808 1.87940 1.36659 1.39906 1.64990 1.22493 0.93431 0.89176 0.96485 1.21525 0.98752 0.95995 0.99428 1.21480 0.98364 0.96298 0.99192 1.21563 0.98339 0.96147 0.99634 1.21933 0.98937 0.96572 0.99432 1.24430 0.94597 0.90245 1.00172 1.98726 1.71744 1.57070 1.89073 1.24048 0.98053 0.92991 0.98170 0.92904 0.95241 0.97687 0.91113 0.90678 0.88965 0.93474 0.93615 0.91157 0.91067 0.91566 0.91643 0.91454 0.91401 0.90609 0.90648 0.88915 0.88898 0.90410 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.51 -14.71 9.39 -34.44 -0.32 -15.04 16 8 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.16 4.34 4.57 -4.98 -0.02 4.31 16 10 N -0.46 -10.47 6.32 -246.08 -1.55 -12.03 16 11 C 0.00 -0.09 7.56 -7.54 -0.06 -0.15 16 12 C 0.05 0.85 4.65 -26.20 -0.12 0.73 16 13 O -0.38 -5.79 10.40 -35.23 -0.37 -6.15 16 14 C 0.06 0.68 5.78 37.16 0.21 0.90 16 15 C -0.12 -1.08 5.58 -26.73 -0.15 -1.23 16 16 C -0.12 -0.76 5.21 -26.73 -0.14 -0.90 16 17 C -0.12 -0.63 5.21 -26.73 -0.14 -0.77 16 18 C -0.13 -0.65 5.34 -26.73 -0.14 -0.79 16 19 C -0.03 -0.15 6.66 37.16 0.25 0.10 16 20 Cl -0.19 -1.39 29.15 -51.86 -1.51 -2.90 16 21 C 0.00 -0.06 7.52 -7.53 -0.06 -0.12 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.03 0.84 8.08 -51.92 -0.42 0.42 16 24 H 0.01 0.15 7.30 -51.93 -0.38 -0.23 16 25 H 0.07 1.47 7.42 -51.93 -0.39 1.08 16 26 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.09 1.33 7.88 -51.93 -0.41 0.92 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.07 1.34 7.91 -51.93 -0.41 0.92 16 LS Contribution 351.64 15.07 5.30 5.30 Total: -1.00 -31.30 351.64 -10.67 -41.97 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -7.47 Total: -5.24 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -0.79 Total: -11.50 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.82 Total: -38.47 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.37 Total: -6.15 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.51 Total: -2.90 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.30 -10.67 -41.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224593304.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.804 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds