Wall clock time and date at job start Mon Mar 30 2020 01:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 O 1.42904 * 114.34213 * 139.68581 * 12 11 10 14 14 C 1.42901 * 113.99749 * 116.07334 * 13 12 11 15 15 C 1.52999 * 109.46930 * 179.97438 * 14 13 12 16 16 C 1.53004 * 109.47311 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.47311 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47120 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.46629 * 179.97438 * 18 17 16 20 20 Cl 1.80299 * 109.46581 * 179.97438 * 19 18 17 21 21 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 26 26 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 27 27 H 1.09002 * 114.16514 * 272.37172 * 12 11 10 28 28 H 1.08997 * 109.47278 * 299.99818 * 14 13 12 29 29 H 1.08998 * 109.47119 * 59.99986 * 14 13 12 30 30 H 1.09005 * 109.47313 * 300.00090 * 15 14 13 31 31 H 1.08999 * 109.47593 * 59.99749 * 15 14 13 32 32 H 1.08997 * 109.47298 * 300.00132 * 16 15 14 33 33 H 1.08998 * 109.46717 * 60.00066 * 16 15 14 34 34 H 1.09011 * 109.46882 * 300.00213 * 17 16 15 35 35 H 1.08998 * 109.47143 * 59.99383 * 17 16 15 36 36 H 1.08997 * 109.46631 * 299.99779 * 18 17 16 37 37 H 1.08998 * 109.47066 * 59.99969 * 18 17 16 38 38 H 1.08997 * 109.47471 * 299.99311 * 19 18 17 39 39 H 1.08998 * 109.47384 * 60.00210 * 19 18 17 40 40 H 1.09000 * 113.47556 * 253.46531 * 21 10 9 41 41 H 1.08997 * 113.47949 * 23.93922 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 8 1.7500 -6.4412 -1.7009 14 6 2.5929 -7.4773 -2.2091 15 6 1.7756 -8.4018 -3.1137 16 6 2.6780 -9.5108 -3.6584 17 6 1.8606 -10.4356 -4.5625 18 6 2.7630 -11.5449 -5.1067 19 6 1.9453 -12.4701 -6.0103 20 17 3.0088 -13.7769 -6.6521 21 6 1.5184 -4.8986 0.2386 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 1.6756 -3.8466 -2.0765 26 1 3.4598 -3.7930 -1.7440 27 1 3.3715 -5.8925 -0.4639 28 1 3.4075 -7.0347 -2.7823 29 1 3.0032 -8.0519 -1.3787 30 1 0.9611 -8.8444 -2.5402 31 1 1.3648 -7.8275 -3.9441 32 1 3.4922 -9.0679 -4.2321 33 1 3.0891 -10.0852 -2.8282 34 1 1.0467 -10.8785 -3.9884 35 1 1.4491 -9.8614 -5.3926 36 1 3.5770 -11.1023 -5.6806 37 1 3.1740 -12.1190 -4.2763 38 1 1.1315 -12.9127 -5.4360 39 1 1.5339 -11.8963 -6.8407 40 1 1.6915 -5.3047 1.2352 41 1 0.4631 -4.8832 -0.0336 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224593304.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:29 Heat of formation + Delta-G solvation = -70.740974 kcal Electronic energy + Delta-G solvation = -18221.388701 eV Core-core repulsion = 15161.414524 eV Total energy + Delta-G solvation = -3059.974177 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.139 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.05734 -38.37157 -37.36697 -36.39448 -35.02710 -33.38277 -31.08710 -28.88255 -27.09768 -26.73520 -24.69503 -23.41762 -22.21717 -21.95321 -20.83267 -18.66345 -17.92277 -17.20633 -16.93333 -16.47603 -16.29547 -15.64831 -15.53829 -15.14312 -14.72677 -14.64382 -14.31314 -14.08715 -13.70364 -13.45799 -13.29303 -12.99944 -12.88347 -12.61265 -12.48919 -12.27099 -12.18557 -11.97336 -11.83141 -11.76062 -11.61191 -11.39020 -11.26336 -11.22881 -11.16051 -10.64098 -10.36942 -9.76457 -8.25074 -6.36338 1.39270 1.41230 1.41578 1.53028 2.37488 2.60064 3.06919 3.38908 3.47040 3.74371 3.91363 3.96849 4.08790 4.09352 4.21259 4.36545 4.40915 4.49748 4.50756 4.55548 4.63824 4.67083 4.72979 4.76813 4.85608 4.88922 4.91560 4.97322 5.03108 5.08298 5.12333 5.28988 5.43297 5.49061 5.53593 5.72516 6.03323 6.32928 6.38381 6.77631 7.33347 8.86442 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.053838 B = 0.001906 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.956928 B =14685.688952 C =14812.062766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.271 1.271 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.530 4.530 8 H 0.061 0.939 9 C 0.176 3.824 10 N -0.480 5.480 11 C -0.012 4.012 12 C 0.084 3.916 13 O -0.394 6.394 14 C 0.052 3.948 15 C -0.115 4.115 16 C -0.110 4.110 17 C -0.115 4.115 18 C -0.126 4.126 19 C -0.028 4.028 20 Cl -0.215 7.215 21 C -0.009 4.009 22 H 0.266 0.734 23 H 0.002 0.998 24 H -0.023 1.023 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.123 0.877 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.537 -25.515 -10.655 28.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.799 3.201 4 H -0.196 1.196 5 H -0.189 1.189 6 H -0.205 1.205 7 C -0.568 4.568 8 H 0.079 0.921 9 C 0.049 3.951 10 N -0.204 5.204 11 C -0.141 4.141 12 C 0.026 3.974 13 O -0.312 6.312 14 C -0.024 4.024 15 C -0.153 4.153 16 C -0.148 4.148 17 C -0.153 4.153 18 C -0.164 4.164 19 C -0.091 4.091 20 Cl -0.189 7.189 21 C -0.138 4.138 22 H 0.075 0.925 23 H 0.020 0.980 24 H -0.005 1.005 25 H 0.069 0.931 26 H 0.104 0.896 27 H 0.140 0.860 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.792 -25.247 -10.314 27.881 hybrid contribution -0.582 0.935 -0.408 1.174 sum 5.210 -24.312 -10.722 27.077 Atomic orbital electron populations 1.70089 1.07799 1.28105 1.51475 1.26002 0.95857 1.03479 0.94523 0.85292 0.78436 0.77729 0.78603 1.19592 1.18871 1.20472 1.21429 0.93676 0.91097 1.50566 0.92057 1.19921 0.90600 0.90460 0.94109 1.68839 1.32887 1.01882 1.16760 1.24286 1.01882 0.95524 0.92451 1.23667 0.96493 0.87188 0.90074 1.87928 1.37909 1.40602 1.64808 1.22821 0.93572 0.88568 0.97485 1.21517 0.98932 0.96159 0.98697 1.21438 0.98038 0.95685 0.99607 1.21513 0.98302 0.95981 0.99498 1.21864 0.98766 0.96377 0.99356 1.24567 0.94278 0.89620 1.00597 1.98727 1.72560 1.58237 1.89381 1.24118 0.97659 0.91564 1.00453 0.92519 0.97973 1.00490 0.93142 0.89639 0.85970 0.92704 0.91867 0.91400 0.91970 0.91312 0.90930 0.91007 0.91297 0.90909 0.90710 0.87786 0.87951 0.88340 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.98 45.11 29.54 68.60 2.03 47.14 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.53 -31.39 9.39 25.60 0.24 -31.15 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 9 C 0.18 9.86 4.57 85.55 0.39 10.25 16 10 N -0.48 -21.85 6.32 -932.85 -5.89 -27.74 16 11 C -0.01 -0.47 7.56 83.58 0.63 0.16 16 12 C 0.08 2.61 4.65 30.94 0.14 2.76 16 13 O -0.39 -11.52 10.40 -148.98 -1.55 -13.06 16 14 C 0.05 1.04 5.78 71.98 0.42 1.45 16 15 C -0.12 -1.87 5.58 30.60 0.17 -1.70 16 16 C -0.11 -1.20 5.21 30.60 0.16 -1.04 16 17 C -0.12 -0.99 5.21 30.59 0.16 -0.83 16 18 C -0.13 -1.01 5.34 30.60 0.16 -0.85 16 19 C -0.03 -0.22 6.66 71.98 0.48 0.26 16 20 Cl -0.22 -2.90 29.15 -2.72 -0.08 -2.98 16 21 C -0.01 -0.33 7.52 83.58 0.63 0.30 16 22 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 23 H 0.00 0.13 8.08 -2.38 -0.02 0.11 16 24 H -0.02 -1.36 7.30 -2.39 -0.02 -1.38 16 25 H 0.05 2.17 7.42 -2.39 -0.02 2.15 16 26 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 27 H 0.12 3.11 7.88 -2.39 -0.02 3.09 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.05 2.18 7.91 -2.39 -0.02 2.16 16 Total: -1.00 -68.12 351.64 -0.20 -68.32 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 0.96 Total: 5.50 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: 4.05 Total: -19.96 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -5.61 Total: -84.96 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -1.55 Total: -13.06 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 17 Polarization: -2.90 SS G_CDS: -0.08 Total: -2.98 kcal Total: -68.12 -0.20 -68.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224593304.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.420 kcal (2) G-P(sol) polarization free energy of solvation -68.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds