Wall clock time and date at job start Mon Mar 30 2020 02:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99807 * 2 1 4 4 H 1.48501 * 109.46877 * 240.00227 * 3 2 1 5 5 H 1.48500 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47186 * 120.00483 * 3 2 1 7 7 C 1.38814 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00076 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00065 * 359.97438 * 7 2 1 10 10 C 1.47430 * 125.64622 * 0.03306 * 9 7 2 11 11 C 1.54910 * 104.83044 * 155.83244 * 10 9 7 12 12 C 1.55163 * 101.58156 * 37.00937 * 11 10 9 13 13 H 1.09000 * 110.71984 * 83.03894 * 12 11 10 14 14 O 1.42899 * 110.71713 * 206.13395 * 12 11 10 15 15 C 1.42895 * 114.00173 * 209.99633 * 14 12 11 16 16 C 1.52993 * 109.47604 * 179.97438 * 15 14 12 17 17 C 1.53006 * 109.47478 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47000 * 180.02562 * 17 16 15 19 19 C 1.53006 * 109.46626 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.46623 * 179.97438 * 19 18 17 21 21 Cl 1.80309 * 109.46977 * 179.97438 * 20 19 18 22 22 C 1.47025 * 125.64878 * 179.97438 * 9 7 2 23 23 H 0.96995 * 120.00169 * 359.97438 * 1 2 3 24 24 H 1.09002 * 110.36872 * 36.99280 * 10 9 7 25 25 H 1.09001 * 110.36491 * 274.67085 * 10 9 7 26 26 H 1.08997 * 111.00575 * 278.93588 * 11 10 9 27 27 H 1.09001 * 111.00510 * 155.08082 * 11 10 9 28 28 H 1.09004 * 109.46851 * 60.00172 * 15 14 12 29 29 H 1.09004 * 109.47492 * 300.00353 * 15 14 12 30 30 H 1.09004 * 109.46862 * 60.00195 * 16 15 14 31 31 H 1.09000 * 109.47250 * 300.00218 * 16 15 14 32 32 H 1.08993 * 109.46765 * 59.99818 * 17 16 15 33 33 H 1.09000 * 109.46866 * 300.00218 * 17 16 15 34 34 H 1.08993 * 109.47839 * 60.00073 * 18 17 16 35 35 H 1.09000 * 109.47160 * 299.99635 * 18 17 16 36 36 H 1.09000 * 109.47050 * 299.99699 * 19 18 17 37 37 H 1.09001 * 109.46801 * 59.99811 * 19 18 17 38 38 H 1.09000 * 109.47486 * 299.99829 * 20 19 18 39 39 H 1.09001 * 109.47362 * 60.00551 * 20 19 18 40 40 H 1.08997 * 109.87575 * 61.68550 * 22 9 7 41 41 H 1.08992 * 109.88069 * 300.51812 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0104 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1414 -2.5332 -0.0007 11 6 -0.4015 -3.9318 -0.6137 12 6 0.7786 -4.7524 -0.0292 13 1 0.5448 -5.1015 0.9766 14 8 1.1005 -5.8528 -0.8822 15 6 1.6318 -6.9863 -0.1931 16 6 1.9378 -8.0975 -1.1992 17 6 2.5060 -9.3115 -0.4613 18 6 2.8126 -10.4225 -1.4676 19 6 3.3802 -11.6366 -0.7295 20 6 3.6863 -12.7478 -1.7357 21 17 4.3559 -14.1783 -0.8661 22 6 1.9320 -3.7275 -0.0016 23 1 -0.4850 0.8400 0.0004 24 1 -0.5992 -1.7583 -0.6157 25 1 -0.5272 -2.4876 1.0177 26 1 -0.3518 -3.8968 -1.7020 27 1 -1.3588 -4.3326 -0.2806 28 1 0.9021 -7.3450 0.5329 29 1 2.5482 -6.7009 0.3235 30 1 2.6673 -7.7392 -1.9255 31 1 1.0212 -8.3829 -1.7154 32 1 1.7762 -9.6696 0.2648 33 1 3.4226 -9.0264 0.0552 34 1 3.5426 -10.0641 -2.1933 35 1 1.8963 -10.7076 -1.9844 36 1 4.2965 -11.3517 -0.2124 37 1 2.6499 -11.9948 -0.0040 38 1 2.7698 -13.0325 -2.2525 39 1 4.4165 -12.3898 -2.4615 40 1 2.5284 -3.8650 0.9003 41 1 2.5583 -3.8501 -0.8851 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224595426.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:55 Heat of formation + Delta-G solvation = -61.689028 kcal Electronic energy + Delta-G solvation = -18633.783951 eV Core-core repulsion = 15574.202296 eV Total energy + Delta-G solvation = -3059.581655 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.139 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.45472 -37.10573 -36.28491 -35.53438 -32.87703 -31.94501 -29.25432 -28.20685 -26.88501 -24.48799 -23.75550 -21.57894 -21.34776 -20.12858 -20.04392 -16.94660 -16.58134 -16.40906 -15.49961 -15.00317 -14.68970 -14.52781 -14.13317 -14.07846 -13.76655 -13.28254 -12.71820 -12.47852 -12.36558 -12.14667 -11.70518 -11.63538 -11.42819 -11.33463 -11.08010 -10.99131 -10.93711 -10.75159 -10.74097 -10.70319 -10.62845 -10.21937 -10.12776 -9.75543 -9.51897 -9.05162 -8.63944 -6.82555 -5.63962 -3.05936 1.86234 3.41819 3.45448 3.47146 3.83892 4.29816 4.33649 4.51231 4.65406 4.71510 4.93803 4.94712 5.04736 5.27375 5.34861 5.36496 5.43832 5.48269 5.51887 5.55579 5.60200 5.68587 5.75145 5.78203 5.86940 5.91114 6.12169 6.14652 6.37256 6.56183 6.61344 6.68744 6.75490 7.50541 7.63406 7.68942 7.86711 8.37017 9.22964 9.83724 10.48486 11.40050 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.050682 B = 0.002132 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.336765 B =13132.227597 C =13509.176381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.917 3.083 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.152 3.848 11 C -0.139 4.139 12 C 0.076 3.924 13 H 0.062 0.938 14 O -0.380 6.380 15 C 0.061 3.939 16 C -0.118 4.118 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.131 4.131 20 C -0.031 4.031 21 Cl -0.193 7.193 22 C 0.119 3.881 23 H 0.253 0.747 24 H 0.111 0.889 25 H 0.013 0.987 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.019 0.981 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.971 -23.883 -2.213 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.178 4.178 12 C 0.018 3.982 13 H 0.080 0.920 14 O -0.299 6.299 15 C -0.016 4.016 16 C -0.155 4.155 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.169 4.169 20 C -0.094 4.094 21 Cl -0.167 7.167 22 C -0.008 4.008 23 H 0.064 0.936 24 H 0.128 0.872 25 H 0.031 0.969 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.037 0.963 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 3.953 -23.759 -2.347 24.199 hybrid contribution 0.584 0.722 0.425 1.021 sum 4.537 -23.036 -1.922 23.557 Atomic orbital electron populations 1.69772 1.04893 1.24919 1.57667 1.24807 0.95772 0.97748 1.02473 0.86118 0.78370 0.82913 0.77891 1.21134 1.21536 1.21226 1.19047 0.90509 0.82389 1.43061 0.90512 1.44393 1.01981 0.99607 1.86983 1.21963 0.84785 0.92269 0.98259 1.23168 0.95328 0.98003 1.01310 1.23233 0.96356 0.85836 0.92745 0.92006 1.87907 1.83417 1.23738 1.34795 1.22466 0.97439 0.86954 0.94762 1.21508 1.01837 0.93720 0.98484 1.21483 1.01350 0.94456 0.98078 1.21560 1.01316 0.94292 0.98467 1.21937 1.02660 0.94161 0.98134 1.24434 1.01517 0.86796 0.96657 1.98726 1.88347 1.48651 1.80945 1.21674 0.94373 0.86561 0.98182 0.93644 0.87176 0.96879 0.91178 0.92091 0.93866 0.93611 0.91106 0.91254 0.91672 0.91576 0.91417 0.91489 0.90604 0.90654 0.88928 0.88907 0.96287 0.94897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.26 10.09 55.49 0.56 -26.70 16 2 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 3 Si 0.92 22.32 29.55 -169.99 -5.02 17.30 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.22 -6.35 10.27 -15.06 -0.15 -6.51 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -16.11 3.39 -170.07 -0.58 -16.69 16 10 C 0.15 3.81 5.89 -2.53 -0.01 3.79 16 11 C -0.14 -2.83 6.81 -24.58 -0.17 -3.00 16 12 C 0.08 1.45 3.45 -24.89 -0.09 1.37 16 13 H 0.06 1.09 7.82 -51.93 -0.41 0.68 16 14 O -0.38 -6.59 10.07 -35.23 -0.35 -6.95 16 15 C 0.06 0.79 5.77 37.15 0.21 1.01 16 16 C -0.12 -1.21 5.58 -26.73 -0.15 -1.36 16 17 C -0.12 -0.88 5.21 -26.73 -0.14 -1.02 16 18 C -0.12 -0.72 5.21 -26.73 -0.14 -0.86 16 19 C -0.13 -0.73 5.34 -26.73 -0.14 -0.87 16 20 C -0.03 -0.16 6.66 37.16 0.25 0.08 16 21 Cl -0.19 -1.47 29.15 -51.86 -1.51 -2.98 16 22 C 0.12 2.65 7.02 -3.06 -0.02 2.63 16 23 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.11 3.07 5.87 -51.93 -0.30 2.76 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.04 0.52 8.11 -51.93 -0.42 0.10 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.03 0.75 8.06 -51.93 -0.42 0.34 16 LS Contribution 344.41 15.07 5.19 5.19 Total: -1.00 -30.85 344.41 -9.80 -40.66 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -7.44 Total: -4.62 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -0.65 Total: -5.19 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: -0.02 Total: -43.39 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.35 Total: -6.95 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -1.51 Total: -2.98 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.85 -9.80 -40.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224595426.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.033 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds