Wall clock time and date at job start Mon Mar 30 2020 02:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99807 * 2 1 4 4 H 1.48501 * 109.46877 * 240.00227 * 3 2 1 5 5 H 1.48500 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47186 * 120.00483 * 3 2 1 7 7 C 1.38814 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00076 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00065 * 359.97438 * 7 2 1 10 10 C 1.47430 * 125.64622 * 0.03306 * 9 7 2 11 11 C 1.54910 * 104.83044 * 155.83244 * 10 9 7 12 12 C 1.55163 * 101.58156 * 37.00937 * 11 10 9 13 13 H 1.09000 * 110.71984 * 83.03894 * 12 11 10 14 14 O 1.42899 * 110.71713 * 206.13395 * 12 11 10 15 15 C 1.42895 * 114.00173 * 209.99633 * 14 12 11 16 16 C 1.52993 * 109.47604 * 179.97438 * 15 14 12 17 17 C 1.53006 * 109.47478 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47000 * 180.02562 * 17 16 15 19 19 C 1.53006 * 109.46626 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.46623 * 179.97438 * 19 18 17 21 21 Cl 1.80309 * 109.46977 * 179.97438 * 20 19 18 22 22 C 1.47025 * 125.64878 * 179.97438 * 9 7 2 23 23 H 0.96995 * 120.00169 * 359.97438 * 1 2 3 24 24 H 1.09002 * 110.36872 * 36.99280 * 10 9 7 25 25 H 1.09001 * 110.36491 * 274.67085 * 10 9 7 26 26 H 1.08997 * 111.00575 * 278.93588 * 11 10 9 27 27 H 1.09001 * 111.00510 * 155.08082 * 11 10 9 28 28 H 1.09004 * 109.46851 * 60.00172 * 15 14 12 29 29 H 1.09004 * 109.47492 * 300.00353 * 15 14 12 30 30 H 1.09004 * 109.46862 * 60.00195 * 16 15 14 31 31 H 1.09000 * 109.47250 * 300.00218 * 16 15 14 32 32 H 1.08993 * 109.46765 * 59.99818 * 17 16 15 33 33 H 1.09000 * 109.46866 * 300.00218 * 17 16 15 34 34 H 1.08993 * 109.47839 * 60.00073 * 18 17 16 35 35 H 1.09000 * 109.47160 * 299.99635 * 18 17 16 36 36 H 1.09000 * 109.47050 * 299.99699 * 19 18 17 37 37 H 1.09001 * 109.46801 * 59.99811 * 19 18 17 38 38 H 1.09000 * 109.47486 * 299.99829 * 20 19 18 39 39 H 1.09001 * 109.47362 * 60.00551 * 20 19 18 40 40 H 1.08997 * 109.87575 * 61.68550 * 22 9 7 41 41 H 1.08992 * 109.88069 * 300.51812 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0104 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1414 -2.5332 -0.0007 11 6 -0.4015 -3.9318 -0.6137 12 6 0.7786 -4.7524 -0.0292 13 1 0.5448 -5.1015 0.9766 14 8 1.1005 -5.8528 -0.8822 15 6 1.6318 -6.9863 -0.1931 16 6 1.9378 -8.0975 -1.1992 17 6 2.5060 -9.3115 -0.4613 18 6 2.8126 -10.4225 -1.4676 19 6 3.3802 -11.6366 -0.7295 20 6 3.6863 -12.7478 -1.7357 21 17 4.3559 -14.1783 -0.8661 22 6 1.9320 -3.7275 -0.0016 23 1 -0.4850 0.8400 0.0004 24 1 -0.5992 -1.7583 -0.6157 25 1 -0.5272 -2.4876 1.0177 26 1 -0.3518 -3.8968 -1.7020 27 1 -1.3588 -4.3326 -0.2806 28 1 0.9021 -7.3450 0.5329 29 1 2.5482 -6.7009 0.3235 30 1 2.6673 -7.7392 -1.9255 31 1 1.0212 -8.3829 -1.7154 32 1 1.7762 -9.6696 0.2648 33 1 3.4226 -9.0264 0.0552 34 1 3.5426 -10.0641 -2.1933 35 1 1.8963 -10.7076 -1.9844 36 1 4.2965 -11.3517 -0.2124 37 1 2.6499 -11.9948 -0.0040 38 1 2.7698 -13.0325 -2.2525 39 1 4.4165 -12.3898 -2.4615 40 1 2.5284 -3.8650 0.9003 41 1 2.5583 -3.8501 -0.8851 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224595426.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:55 Heat of formation + Delta-G solvation = -78.207912 kcal Electronic energy + Delta-G solvation = -18634.500264 eV Core-core repulsion = 15574.202296 eV Total energy + Delta-G solvation = -3060.297968 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.139 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.93500 -38.00133 -37.30498 -36.39801 -34.32417 -33.24657 -31.10578 -29.26012 -28.41844 -26.35516 -24.61753 -22.34784 -22.06819 -21.97218 -21.53765 -18.98072 -17.91366 -17.11504 -16.75810 -16.40445 -16.02905 -15.70104 -15.31034 -14.91380 -14.79828 -14.54325 -14.27428 -13.64832 -13.56264 -13.35220 -13.14250 -12.94259 -12.72428 -12.58383 -12.42625 -12.27455 -12.06273 -11.91344 -11.86522 -11.83057 -11.69604 -11.39797 -11.34394 -11.22492 -11.18114 -10.76421 -10.44022 -8.93109 -7.79425 -5.25152 1.41573 1.46181 1.50094 1.56584 2.46425 2.68045 3.30563 3.68706 3.76231 3.83967 3.91894 4.03240 4.10740 4.11731 4.16584 4.26711 4.40921 4.48090 4.53652 4.63234 4.69716 4.74766 4.77139 4.87556 4.95214 4.96623 5.02558 5.05456 5.09045 5.12949 5.29755 5.42826 5.43590 5.49352 5.59106 5.76282 6.26691 6.38165 7.07747 7.74000 8.37883 9.22442 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.050682 B = 0.002132 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.336765 B =13132.227597 C =13509.176381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.985 3.015 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.626 5.626 10 C 0.154 3.846 11 C -0.127 4.127 12 C 0.093 3.907 13 H 0.083 0.917 14 O -0.392 6.392 15 C 0.051 3.949 16 C -0.112 4.112 17 C -0.111 4.111 18 C -0.114 4.114 19 C -0.126 4.126 20 C -0.027 4.027 21 Cl -0.216 7.216 22 C 0.114 3.886 23 H 0.249 0.751 24 H 0.078 0.922 25 H -0.003 1.003 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.025 0.975 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.376 -25.141 -2.263 25.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.813 3.187 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.097 0.903 9 N -0.353 5.353 10 C 0.029 3.971 11 C -0.165 4.165 12 C 0.035 3.965 13 H 0.100 0.900 14 O -0.311 6.311 15 C -0.025 4.025 16 C -0.150 4.150 17 C -0.149 4.149 18 C -0.151 4.151 19 C -0.164 4.164 20 C -0.090 4.090 21 Cl -0.189 7.189 22 C -0.011 4.011 23 H 0.059 0.941 24 H 0.096 0.904 25 H 0.015 0.985 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.043 0.957 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.374 -25.054 -2.399 25.546 hybrid contribution 0.473 1.081 0.429 1.255 sum 4.847 -23.974 -1.970 24.538 Atomic orbital electron populations 1.70023 1.06203 1.25331 1.58243 1.25705 0.96775 1.01124 1.02401 0.85054 0.77102 0.78347 0.78209 1.20299 1.21631 1.20304 1.19426 0.91024 0.83707 1.43194 0.90276 1.44711 1.02891 1.00708 1.87017 1.21758 0.84049 0.94350 0.96973 1.22986 0.97529 0.95429 1.00581 1.22946 0.94003 0.85752 0.93836 0.89951 1.87891 1.83637 1.24250 1.35297 1.22797 0.97736 0.86185 0.95808 1.21493 1.01863 0.93667 0.97929 1.21447 1.01346 0.93768 0.98308 1.21501 1.01742 0.93804 0.98102 1.21868 1.02401 0.94035 0.98120 1.24566 1.02292 0.85709 0.96417 1.98727 1.88692 1.50018 1.81506 1.21835 0.95633 0.85806 0.97872 0.94105 0.90415 0.98535 0.91880 0.88992 0.92284 0.93529 0.91844 0.91072 0.91023 0.91587 0.91203 0.90817 0.91024 0.90755 0.87686 0.87898 0.95656 0.95780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.17 10.09 21.65 0.22 -56.95 16 2 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 3 Si 0.99 46.16 29.55 68.60 2.03 48.18 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.24 -14.20 10.27 84.03 0.86 -13.33 16 8 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.63 -33.86 3.39 -691.98 -2.35 -36.21 16 10 C 0.15 7.81 5.89 86.85 0.51 8.32 16 11 C -0.13 -5.01 6.81 31.99 0.22 -4.79 16 12 C 0.09 3.39 3.45 31.78 0.11 3.50 16 13 H 0.08 2.68 7.82 -2.39 -0.02 2.66 16 14 O -0.39 -12.84 10.07 -148.98 -1.50 -14.34 16 15 C 0.05 1.21 5.77 71.98 0.42 1.63 16 16 C -0.11 -2.05 5.58 30.59 0.17 -1.88 16 17 C -0.11 -1.43 5.21 30.60 0.16 -1.27 16 18 C -0.11 -1.10 5.21 30.60 0.16 -0.94 16 19 C -0.13 -1.15 5.34 30.60 0.16 -0.99 16 20 C -0.03 -0.23 6.66 71.98 0.48 0.25 16 21 Cl -0.22 -3.05 29.15 -2.72 -0.08 -3.13 16 22 C 0.11 5.06 7.02 86.73 0.61 5.67 16 23 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 24 H 0.08 4.47 5.87 -2.39 -0.01 4.45 16 25 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 26 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 28 H 0.06 1.23 8.11 -2.38 -0.02 1.22 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.02 1.10 8.06 -2.39 -0.02 1.08 16 Total: -1.00 -66.58 344.41 3.61 -62.97 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 0.96 Total: 6.74 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 4.32 Total: -7.28 kcal Atomic # 7 Polarization: -91.03 SS G_CDS: -2.13 Total: -93.16 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -1.50 Total: -14.34 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Atomic # 17 Polarization: -3.05 SS G_CDS: -0.08 Total: -3.13 kcal Total: -66.58 3.61 -62.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224595426.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.233 kcal (2) G-P(sol) polarization free energy of solvation -66.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds