Wall clock time and date at job start Mon Mar 30 2020 02:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48498 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47204 * 300.00472 * 3 2 1 6 6 H 1.48508 * 109.46889 * 60.00276 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 H 1.09008 * 111.00345 * 277.42446 * 12 11 10 14 14 O 1.42900 * 111.03913 * 153.59305 * 12 11 10 15 15 C 1.42895 * 114.00206 * 156.33029 * 14 12 11 16 16 C 1.52996 * 109.47194 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47299 * 179.97438 * 16 15 14 18 18 C 1.53004 * 109.47425 * 180.02562 * 17 16 15 19 19 C 1.52993 * 109.47477 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.47186 * 180.02562 * 19 18 17 21 21 Cl 1.80304 * 109.46994 * 179.97438 * 20 19 18 22 22 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 23 23 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 25 25 H 1.08995 * 110.00297 * 298.42768 * 10 9 7 26 26 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 27 27 H 1.08997 * 110.72163 * 96.18354 * 11 10 9 28 28 H 1.09001 * 109.47419 * 299.99825 * 15 14 12 29 29 H 1.09004 * 109.46922 * 59.99952 * 15 14 12 30 30 H 1.08998 * 109.47690 * 300.00436 * 16 15 14 31 31 H 1.09004 * 109.47172 * 59.99963 * 16 15 14 32 32 H 1.08992 * 109.47520 * 300.00229 * 17 16 15 33 33 H 1.09004 * 109.46723 * 60.00499 * 17 16 15 34 34 H 1.09001 * 109.46960 * 300.00565 * 18 17 16 35 35 H 1.08998 * 109.46943 * 59.99691 * 18 17 16 36 36 H 1.09003 * 109.46674 * 299.99764 * 19 18 17 37 37 H 1.09004 * 109.47223 * 59.99527 * 19 18 17 38 38 H 1.09003 * 109.46919 * 299.99366 * 20 19 18 39 39 H 1.08998 * 109.46944 * 59.99636 * 20 19 18 40 40 H 1.09002 * 110.36696 * 85.26297 * 22 9 7 41 41 H 1.08995 * 110.36608 * 323.05133 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 6 0.8538 -4.6579 -0.6131 13 1 0.8588 -4.5974 -1.7015 14 8 1.0297 -6.0073 -0.1771 15 6 1.8521 -6.7946 -1.0406 16 6 1.9708 -8.2127 -0.4785 17 6 2.8509 -9.0559 -1.4034 18 6 2.9691 -10.4741 -0.8417 19 6 3.8496 -11.3172 -1.7662 20 6 3.9673 -12.7356 -1.2048 21 17 5.0044 -13.7292 -2.2948 22 6 1.9335 -3.7312 -0.0005 23 1 -0.4850 0.8400 -0.0004 24 1 -0.5607 -2.0564 -0.8839 25 1 -0.5599 -2.0893 0.9002 26 1 -1.2974 -4.2573 -0.6785 27 1 -0.6304 -4.4236 0.9788 28 1 1.4039 -6.8333 -2.0335 29 1 2.8434 -6.3462 -1.1066 30 1 2.4191 -8.1737 0.5142 31 1 0.9796 -8.6614 -0.4122 32 1 2.4022 -9.0949 -2.3960 33 1 3.8421 -8.6073 -1.4701 34 1 3.4176 -10.4355 0.1510 35 1 1.9778 -10.9224 -0.7752 36 1 3.4014 -11.3558 -2.7591 37 1 4.8409 -10.8687 -1.8323 38 1 4.4153 -12.6973 -0.2119 39 1 2.9759 -13.1837 -1.1391 40 1 2.1668 -4.0420 1.0178 41 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224595428.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:59 Heat of formation + Delta-G solvation = -63.255618 kcal Electronic energy + Delta-G solvation = -18634.233641 eV Core-core repulsion = 15574.584053 eV Total energy + Delta-G solvation = -3059.649588 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.139 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.44077 -37.10382 -36.28507 -35.53472 -32.87188 -31.95308 -29.26700 -28.20398 -26.89335 -24.49431 -23.74019 -21.57303 -21.33788 -20.22077 -19.99526 -16.95186 -16.56139 -16.41528 -15.50785 -14.99499 -14.63987 -14.50528 -14.11797 -14.10465 -13.77598 -13.19316 -12.83477 -12.47877 -12.30281 -12.11549 -11.95234 -11.70185 -11.40632 -11.39402 -11.06516 -10.93836 -10.91366 -10.77348 -10.74994 -10.67216 -10.56299 -10.16347 -10.05938 -9.76056 -9.70516 -9.04548 -8.60340 -6.83154 -5.71127 -3.04919 1.86422 3.40055 3.45214 3.48006 3.82340 4.29352 4.33757 4.51363 4.65474 4.71657 4.93905 4.94539 5.05024 5.27942 5.35978 5.38034 5.44207 5.48193 5.50563 5.59077 5.62279 5.69412 5.74992 5.79218 5.86854 5.87296 6.12194 6.13856 6.30887 6.48820 6.55341 6.70010 6.74839 7.55847 7.61780 7.66391 7.83197 8.25318 9.21437 9.81774 10.48091 11.40936 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.044467 B = 0.002164 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.523595 B =12933.425283 C =13422.734607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.605 5.605 10 C 0.178 3.822 11 C -0.137 4.137 12 C 0.073 3.927 13 H 0.065 0.935 14 O -0.381 6.381 15 C 0.062 3.938 16 C -0.118 4.118 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.131 4.131 20 C -0.031 4.031 21 Cl -0.193 7.193 22 C 0.118 3.882 23 H 0.252 0.748 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.027 0.973 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.873 -23.821 -3.167 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.176 4.176 12 C 0.014 3.986 13 H 0.083 0.917 14 O -0.300 6.300 15 C -0.015 4.015 16 C -0.155 4.155 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.169 4.169 20 C -0.094 4.094 21 Cl -0.167 7.167 22 C -0.009 4.009 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.044 0.956 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.821 -23.745 -3.078 24.424 hybrid contribution 0.586 0.967 -0.264 1.161 sum 5.406 -22.778 -3.342 23.648 Atomic orbital electron populations 1.69966 1.04888 1.24958 1.57210 1.24825 0.95769 0.97713 1.02317 0.86018 0.78689 0.83662 0.77239 1.20499 1.21749 1.21718 1.19114 0.90472 0.82280 1.43624 0.90345 1.44429 1.01744 0.99733 1.87346 1.21208 0.84365 0.87736 1.01373 1.22970 0.95259 0.98755 1.00586 1.23401 0.97409 0.80275 0.97489 0.91707 1.87853 1.69761 1.22531 1.49870 1.22448 0.94532 0.91377 0.93190 1.21505 1.00586 0.93652 0.99766 1.21485 1.00391 0.94308 0.99217 1.21557 0.99885 0.95119 0.99051 1.21937 1.01821 0.92819 1.00332 1.24432 0.96830 0.93046 0.95095 1.98726 1.72975 1.74614 1.70338 1.21926 0.94563 0.86671 0.97722 0.93763 0.93372 0.93548 0.91874 0.91503 0.93827 0.93526 0.91133 0.91293 0.91656 0.91541 0.91443 0.91499 0.90646 0.90590 0.88911 0.88943 0.95554 0.94603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.44 10.33 55.49 0.57 -26.86 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.23 -6.46 10.28 -15.06 -0.15 -6.62 16 8 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 9 N -0.60 -16.02 3.40 -169.86 -0.58 -16.60 16 10 C 0.18 4.44 5.38 -2.92 -0.02 4.43 16 11 C -0.14 -2.74 6.69 -24.90 -0.17 -2.90 16 12 C 0.07 1.38 3.49 -24.58 -0.09 1.29 16 13 H 0.06 1.19 7.90 -51.92 -0.41 0.78 16 14 O -0.38 -6.48 10.16 -35.23 -0.36 -6.84 16 15 C 0.06 0.80 5.82 37.16 0.22 1.02 16 16 C -0.12 -1.18 5.58 -26.73 -0.15 -1.33 16 17 C -0.12 -0.89 5.21 -26.73 -0.14 -1.02 16 18 C -0.12 -0.71 5.21 -26.73 -0.14 -0.85 16 19 C -0.13 -0.73 5.34 -26.73 -0.14 -0.87 16 20 C -0.03 -0.16 6.66 37.16 0.25 0.09 16 21 Cl -0.19 -1.47 29.15 -51.86 -1.51 -2.98 16 22 C 0.12 2.59 6.96 -2.53 -0.02 2.57 16 23 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.05 1.30 7.39 -51.93 -0.38 0.92 16 25 H 0.05 1.27 7.51 -51.93 -0.39 0.88 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.04 0.53 8.11 -51.93 -0.42 0.11 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 345.22 15.07 5.20 5.20 Total: -1.00 -30.97 345.22 -9.83 -40.80 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -7.49 Total: -5.42 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -0.64 Total: -4.58 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.00 Total: -43.46 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.36 Total: -6.84 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -1.51 Total: -2.98 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.97 -9.83 -40.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224595428.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.452 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds