Wall clock time and date at job start Mon Mar 30 2020 02:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48498 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47204 * 300.00472 * 3 2 1 6 6 H 1.48508 * 109.46889 * 60.00276 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 H 1.09008 * 111.00345 * 277.42446 * 12 11 10 14 14 O 1.42900 * 111.03913 * 153.59305 * 12 11 10 15 15 C 1.42895 * 114.00206 * 156.33029 * 14 12 11 16 16 C 1.52996 * 109.47194 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47299 * 179.97438 * 16 15 14 18 18 C 1.53004 * 109.47425 * 180.02562 * 17 16 15 19 19 C 1.52993 * 109.47477 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.47186 * 180.02562 * 19 18 17 21 21 Cl 1.80304 * 109.46994 * 179.97438 * 20 19 18 22 22 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 23 23 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 25 25 H 1.08995 * 110.00297 * 298.42768 * 10 9 7 26 26 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 27 27 H 1.08997 * 110.72163 * 96.18354 * 11 10 9 28 28 H 1.09001 * 109.47419 * 299.99825 * 15 14 12 29 29 H 1.09004 * 109.46922 * 59.99952 * 15 14 12 30 30 H 1.08998 * 109.47690 * 300.00436 * 16 15 14 31 31 H 1.09004 * 109.47172 * 59.99963 * 16 15 14 32 32 H 1.08992 * 109.47520 * 300.00229 * 17 16 15 33 33 H 1.09004 * 109.46723 * 60.00499 * 17 16 15 34 34 H 1.09001 * 109.46960 * 300.00565 * 18 17 16 35 35 H 1.08998 * 109.46943 * 59.99691 * 18 17 16 36 36 H 1.09003 * 109.46674 * 299.99764 * 19 18 17 37 37 H 1.09004 * 109.47223 * 59.99527 * 19 18 17 38 38 H 1.09003 * 109.46919 * 299.99366 * 20 19 18 39 39 H 1.08998 * 109.46944 * 59.99636 * 20 19 18 40 40 H 1.09002 * 110.36696 * 85.26297 * 22 9 7 41 41 H 1.08995 * 110.36608 * 323.05133 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 6 0.8538 -4.6579 -0.6131 13 1 0.8588 -4.5974 -1.7015 14 8 1.0297 -6.0073 -0.1771 15 6 1.8521 -6.7946 -1.0406 16 6 1.9708 -8.2127 -0.4785 17 6 2.8509 -9.0559 -1.4034 18 6 2.9691 -10.4741 -0.8417 19 6 3.8496 -11.3172 -1.7662 20 6 3.9673 -12.7356 -1.2048 21 17 5.0044 -13.7292 -2.2948 22 6 1.9335 -3.7312 -0.0005 23 1 -0.4850 0.8400 -0.0004 24 1 -0.5607 -2.0564 -0.8839 25 1 -0.5599 -2.0893 0.9002 26 1 -1.2974 -4.2573 -0.6785 27 1 -0.6304 -4.4236 0.9788 28 1 1.4039 -6.8333 -2.0335 29 1 2.8434 -6.3462 -1.1066 30 1 2.4191 -8.1737 0.5142 31 1 0.9796 -8.6614 -0.4122 32 1 2.4022 -9.0949 -2.3960 33 1 3.8421 -8.6073 -1.4701 34 1 3.4176 -10.4355 0.1510 35 1 1.9778 -10.9224 -0.7752 36 1 3.4014 -11.3558 -2.7591 37 1 4.8409 -10.8687 -1.8323 38 1 4.4153 -12.6973 -0.2119 39 1 2.9759 -13.1837 -1.1391 40 1 2.1668 -4.0420 1.0178 41 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224595428.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:58 Heat of formation + Delta-G solvation = -79.940480 kcal Electronic energy + Delta-G solvation = -18634.957151 eV Core-core repulsion = 15574.584053 eV Total energy + Delta-G solvation = -3060.373098 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.139 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.91973 -37.99810 -37.30070 -36.39226 -34.32543 -33.24845 -31.11766 -29.25849 -28.42516 -26.35726 -24.60900 -22.29250 -22.13414 -21.94991 -21.56918 -18.96982 -17.89845 -17.12277 -16.72212 -16.39855 -16.03624 -15.66681 -15.21022 -15.04314 -14.82162 -14.48701 -14.10080 -13.97167 -13.67433 -13.32140 -13.10731 -12.91133 -12.77059 -12.66926 -12.31433 -12.22527 -11.99435 -11.91892 -11.87101 -11.81379 -11.69872 -11.44024 -11.38249 -11.22114 -11.19048 -10.75126 -10.43425 -8.94998 -7.87847 -5.24875 1.42107 1.45583 1.47043 1.57577 2.44379 2.66089 3.31034 3.67715 3.79894 3.82649 3.92156 4.02387 4.11596 4.12107 4.15893 4.26164 4.41339 4.48278 4.53906 4.61318 4.70209 4.72526 4.77541 4.87305 4.94759 4.96777 5.01581 5.05292 5.11135 5.13609 5.30363 5.41433 5.44224 5.50021 5.60398 5.70565 6.13804 6.36626 7.05992 7.71797 8.37091 9.23127 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.044467 B = 0.002164 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.523595 B =12933.425283 C =13422.734607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.983 3.017 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.083 0.917 9 N -0.627 5.627 10 C 0.185 3.815 11 C -0.125 4.125 12 C 0.091 3.909 13 H 0.075 0.925 14 O -0.389 6.389 15 C 0.052 3.948 16 C -0.111 4.111 17 C -0.112 4.112 18 C -0.113 4.113 19 C -0.127 4.127 20 C -0.027 4.027 21 Cl -0.216 7.216 22 C 0.114 3.886 23 H 0.249 0.751 24 H 0.020 0.980 25 H 0.011 0.989 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.022 0.978 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.537 -25.151 -3.495 25.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.261 4.261 3 Si 0.811 3.189 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.101 0.899 9 N -0.355 5.355 10 C 0.060 3.940 11 C -0.163 4.163 12 C 0.032 3.968 13 H 0.093 0.907 14 O -0.307 6.307 15 C -0.025 4.025 16 C -0.148 4.148 17 C -0.150 4.150 18 C -0.151 4.151 19 C -0.165 4.165 20 C -0.090 4.090 21 Cl -0.190 7.190 22 C -0.012 4.012 23 H 0.058 0.942 24 H 0.038 0.962 25 H 0.029 0.971 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.040 0.960 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.505 -25.115 -3.406 25.936 hybrid contribution 0.394 1.338 -0.135 1.401 sum 5.899 -23.778 -3.541 24.753 Atomic orbital electron populations 1.70181 1.06344 1.25429 1.58095 1.25729 0.96742 1.01203 1.02398 0.84939 0.78128 0.79008 0.76796 1.18921 1.21639 1.21841 1.19510 0.91047 0.83513 1.43292 0.89882 1.44742 1.02570 1.00923 1.87234 1.20969 0.83728 0.90987 0.98299 1.22806 0.96835 0.94904 1.01778 1.23053 0.95176 0.80988 0.97551 0.90695 1.87844 1.70543 1.21336 1.51019 1.22774 0.93940 0.92247 0.93512 1.21485 1.01290 0.92118 0.99936 1.21453 0.99779 0.94799 0.98941 1.21496 1.00407 0.94073 0.99108 1.21870 1.01463 0.92951 1.00194 1.24566 0.97103 0.92422 0.94872 1.98727 1.73767 1.75278 1.71208 1.22073 0.95813 0.85455 0.97834 0.94214 0.96219 0.97065 0.89274 0.90963 0.92606 0.93568 0.91580 0.90992 0.91187 0.91627 0.91094 0.90772 0.90840 0.91052 0.87837 0.87678 0.96049 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.02 10.33 21.65 0.22 -57.79 16 2 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 3 Si 0.98 46.18 29.55 68.60 2.03 48.21 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 7 C -0.24 -14.08 10.28 84.03 0.86 -13.22 16 8 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 9 N -0.63 -33.56 3.40 -691.30 -2.35 -35.91 16 10 C 0.19 9.45 5.38 86.68 0.47 9.92 16 11 C -0.13 -4.86 6.69 31.78 0.21 -4.64 16 12 C 0.09 3.31 3.49 31.99 0.11 3.43 16 13 H 0.08 2.59 7.90 -2.38 -0.02 2.57 16 14 O -0.39 -12.37 10.16 -148.98 -1.51 -13.89 16 15 C 0.05 1.22 5.82 71.98 0.42 1.64 16 16 C -0.11 -1.97 5.58 30.59 0.17 -1.80 16 17 C -0.11 -1.44 5.21 30.60 0.16 -1.28 16 18 C -0.11 -1.06 5.21 30.59 0.16 -0.90 16 19 C -0.13 -1.15 5.34 30.59 0.16 -0.99 16 20 C -0.03 -0.23 6.66 71.98 0.48 0.25 16 21 Cl -0.22 -3.05 29.15 -2.72 -0.08 -3.13 16 22 C 0.11 4.94 6.96 86.86 0.60 5.55 16 23 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 24 H 0.02 1.10 7.39 -2.38 -0.02 1.08 16 25 H 0.01 0.63 7.51 -2.39 -0.02 0.62 16 26 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 27 H 0.07 2.72 8.14 -2.39 -0.02 2.71 16 28 H 0.06 1.21 8.11 -2.39 -0.02 1.19 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.10 0.62 8.14 -2.39 -0.02 0.61 16 40 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -66.92 345.22 3.54 -63.38 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 0.96 Total: 4.65 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 4.28 Total: -5.51 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -2.13 Total: -93.71 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -1.51 Total: -13.89 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Atomic # 17 Polarization: -3.05 SS G_CDS: -0.08 Total: -3.13 kcal Total: -66.92 3.54 -63.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224595428.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.560 kcal (2) G-P(sol) polarization free energy of solvation -66.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds